MD15G1012400.v1.1

Gibberellin-regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0004300
Physical Location & Seq
Forward (+)
697462 .. 697659
198 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1012400.v1.1.491

Sequence Viewer

Length: 198 bp
ATGGTGATATTTCCAGACTGTGACGGAGCTTGTGTTGTGAGGTGCTCAAAATCGTCAAGGCCTAATATGTGCCACAGGGCATGCGGGACATGTTGTTGGAGATGCTTCTGCGTTCCACCTGGTACTTTCGGCAACTATGATGTATGCCCTTGTTATAGAGACATGACTACCTGTGGAGGCATACACAAATGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

66

Amino Acids

7.16

Weight (kDa)

8.26

Isoelectric Point (pI)

57.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 6 - 65 3.6e-21 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 84
AfaI GTAC 1 cut(s) 124
AflIII ACRYGT 1 cut(s) 89
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 1 cut(s) 29
AluI AGCT 1 cut(s) 29
Alw21I GWGCWC 1 cut(s) 47
Alw26I GTCTC 1 cut(s) 153
AoxI GGCC 1 cut(s) 59
AsuHPI GGTGA 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 47
BciT130I CCWGG 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 153
Bme1390I CCNGG 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 120
BmsI GCATC 1 cut(s) 92
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
BseBI CCWGG 1 cut(s) 120
BshFI GGCC 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 47
BslFI GGGAC 1 cut(s) 100
BsmAI GTCTC 1 cut(s) 153
BsmFI GGGAC 1 cut(s) 100
BsnI GGCC 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 47
BspACI CCGC 1 cut(s) 84
BspANI GGCC 1 cut(s) 61
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 82
BstMAI GTCTC 1 cut(s) 153
BstNI CCWGG 1 cut(s) 120
BstNSI RCATGY 2 cut(s) 84, 93
BstSCI CCNGG 1 cut(s) 118
BsuRI GGCC 1 cut(s) 61
Cac8I GCNNGC 1 cut(s) 82
CsiI ACCWGGT 1 cut(s) 118
Csp6I GTAC 1 cut(s) 123
CviAII CATG 3 cut(s) 81, 90, 163
CviJI RGCY 2 cut(s) 29, 61
CviKI_1 RGCY 2 cut(s) 29, 61
CviQI GTAC 1 cut(s) 123
Eco147I AGGCCT 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 118
FaeI CATG 3 cut(s) 84, 93, 166
FaiI YATR 8 cut(s) 68, 82, 91, 138, 145, 156, 164, 182
FaqI GGGAC 1 cut(s) 100
FatI CATG 3 cut(s) 80, 89, 162
FauI CCCGC 1 cut(s) 77
HaeIII GGCC 1 cut(s) 61
Hin1II CATG 3 cut(s) 84, 93, 166
HphI GGTGA 1 cut(s) 16
Hpy188III TCNNGA 1 cut(s) 14
HpyCH4III ACNGT 1 cut(s) 20
Hsp92II CATG 3 cut(s) 84, 93, 166
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 5 cut(s) 27, 61, 105, 132, 184
LweI GCATC 1 cut(s) 92
MabI ACCWGGT 1 cut(s) 118
MaeIII GTNAC 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 2 cut(s) 33, 170
MseI TTAA 1 cut(s) 196
MspR9I CCNGG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 120
NlaIII CATG 3 cut(s) 84, 93, 166
NmuCI GTSAC 1 cut(s) 20
NspI RCATGY 2 cut(s) 84, 93
PaeI GCATGC 1 cut(s) 84
PceI AGGCCT 1 cut(s) 61
PciI ACATGT 1 cut(s) 89
PscI ACATGT 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
SaqAI TTAA 1 cut(s) 196
ScrFI CCNGG 1 cut(s) 120
SduI GDGCHC 1 cut(s) 47
SetI ASST 4 cut(s) 31, 44, 121, 173
SexAI ACCWGGT 1 cut(s) 118
SfaNI GCATC 1 cut(s) 92
SphI GCATGC 1 cut(s) 84
SseBI AGGCCT 1 cut(s) 61
SsiI CCGC 1 cut(s) 84
StuI AGGCCT 1 cut(s) 61
StyD4I CCNGG 1 cut(s) 118
TaaI ACNGT 1 cut(s) 20
Tru1I TTAA 1 cut(s) 196
Tru9I TTAA 1 cut(s) 196
TseFI GTSAC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 20
TspGWI ACGGA 1 cut(s) 39
XceI RCATGY 2 cut(s) 84, 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.