FvH4_2g38500

Gibberellin-regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0004300
Physical Location & Seq
Forward (+)
27843829 .. 27844888
1060 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g38500.t2

Sequence Viewer

Length: 300 bp
ATGATGTTCAGGGCTCTAATTCCTCAACTTCTCGTTTCTATTCTCATTTTCCAACTTGTTTGTACCGCTGTCCAGGTGAGTAATCCTCCGGTCGGATCCCCTCTTTCCCCAAAAATAGATTGCGATGGAGCGTGTGACGTAAGATGTGGTTTATCGTCGCGGCCAGATGAATGCAAGAGGGCATGTGGGACGTGCTGTGCTAGATGTGGTTGTGTTCCACCCGGCACTTCCGGTCACTATGAAGCATGTCCTTGCTACTGGAATATGACCACTCACGGTGGAAGGCGCAAATGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

100

Amino Acids

10.61

Weight (kDa)

8.46

Isoelectric Point (pI)

69.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 20 - 79 2e-21 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 160
AciI CCGC 2 cut(s) 66, 160
AclWI GGATC 2 cut(s) 90, 103
AcoI YGGCCR 1 cut(s) 161
AfaI GTAC 1 cut(s) 64
AfiI CCNNNNNNNGG 1 cut(s) 92
AjiI CACGTC 1 cut(s) 192
AjnI CCWGG 1 cut(s) 72
AlwI GGATC 2 cut(s) 90, 103
AoxI GGCC 1 cut(s) 161
AspLEI GCGC 1 cut(s) 288
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 88
BamHI GGATCC 1 cut(s) 95
BanII GRGCYC 1 cut(s) 16
BccI CCATC 1 cut(s) 119
BciT130I CCWGG 1 cut(s) 74
BcnI CCSGG 1 cut(s) 222
BfaI CTAG 1 cut(s) 201
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
Bme1390I CCNGG 2 cut(s) 74, 222
BmgBI CACGTC 1 cut(s) 192
BmiI GGNNCC 1 cut(s) 97
BmrFI CCNGG 2 cut(s) 74, 222
BplI GAGNNNNNCTC 2 cut(s) 70, 102
BpuMI CCSGG 1 cut(s) 222
BsaWI WCCGGW 2 cut(s) 88, 230
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 263
BseBI CCWGG 1 cut(s) 74
BseLI CCNNNNNNNGG 1 cut(s) 92
BseNI ACTGG 1 cut(s) 263
Bsh1236I CGCG 1 cut(s) 160
Bsh1285I CGRYCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 163
BsiEI CGRYCG 1 cut(s) 93
BsiSI CCGG 3 cut(s) 89, 222, 231
BslFI GGGAC 1 cut(s) 202
BslI CCNNNNNNNGG 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 202
BsmI GAATGC 1 cut(s) 176
BsnI GGCC 1 cut(s) 163
Bsp1286I GDGCHC 1 cut(s) 16
Bsp143I GATC 1 cut(s) 95
BspACI CCGC 2 cut(s) 66, 160
BspANI GGCC 1 cut(s) 163
BspFNI CGCG 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 97
BspPI GGATC 2 cut(s) 90, 103
BsrI ACTGG 1 cut(s) 263
BssMI GATC 1 cut(s) 95
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 278
BstFNI CGCG 1 cut(s) 160
BstHHI GCGC 1 cut(s) 288
BstKTI GATC 1 cut(s) 98
BstMBI GATC 1 cut(s) 95
BstMCI CGRYCG 1 cut(s) 93
BstNI CCWGG 1 cut(s) 74
BstNSI RCATGY 2 cut(s) 186, 249
BstSCI CCNGG 2 cut(s) 72, 220
BstUI CGCG 1 cut(s) 160
BstX2I RGATCY 1 cut(s) 95
BstYI RGATCY 1 cut(s) 95
BsuRI GGCC 1 cut(s) 163
BtgZI GCGATG 1 cut(s) 138
BtrI CACGTC 1 cut(s) 192
CfoI GCGC 1 cut(s) 288
Csp6I GTAC 1 cut(s) 63
CviAII CATG 2 cut(s) 183, 246
CviJI RGCY 2 cut(s) 14, 163
CviKI_1 RGCY 2 cut(s) 14, 163
CviQI GTAC 1 cut(s) 63
DpnI GATC 1 cut(s) 97
DpnII GATC 1 cut(s) 95
EaeI YGGCCR 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 72
EcoT38I GRGCYC 1 cut(s) 16
FaeI CATG 2 cut(s) 186, 249
FaiI YATR 4 cut(s) 184, 240, 247, 266
FaqI GGGAC 1 cut(s) 202
FatI CATG 2 cut(s) 182, 245
Fnu4HI GCNGC 1 cut(s) 161
FriOI GRGCYC 1 cut(s) 16
Fsp4HI GCNGC 1 cut(s) 161
FspBI CTAG 1 cut(s) 201
GlaI GCGC 1 cut(s) 287
GluI GCNGC 1 cut(s) 161
HaeIII GGCC 1 cut(s) 163
HapII CCGG 3 cut(s) 89, 222, 231
HhaI GCGC 1 cut(s) 288
Hin1II CATG 2 cut(s) 186, 249
Hin6I GCGC 1 cut(s) 286
HinP1I GCGC 1 cut(s) 286
HpaII CCGG 3 cut(s) 89, 222, 231
HphI GGTGA 1 cut(s) 88
Hpy188I TCNGA 1 cut(s) 95
Hpy99I CGWCG 1 cut(s) 160
HpyAV CCTTC 1 cut(s) 276
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4IV ACGT 2 cut(s) 138, 191
HpyCH4V TGCA 1 cut(s) 174
HpySE526I ACGT 2 cut(s) 138, 191
Hsp92II CATG 2 cut(s) 186, 249
HspAI GCGC 1 cut(s) 286
Kzo9I GATC 1 cut(s) 95
LmnI GCTCC 1 cut(s) 128
LpnPI CCDG 7 cut(s) 59, 86, 102, 177, 235, 244, 244
MaeI CTAG 1 cut(s) 201
MaeII ACGT 2 cut(s) 138, 191
MaeIII GTNAC 2 cut(s) 134, 233
MalI GATC 1 cut(s) 97
MboI GATC 1 cut(s) 95
MflI RGATCY 1 cut(s) 95
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 1 cut(s) 18
MmeI TCCRAC 2 cut(s) 73, 76
MnlI CCTC 4 cut(s) 33, 96, 111, 171
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 3 cut(s) 89, 222, 231
MspR9I CCNGG 2 cut(s) 74, 222
Mva1269I GAATGC 1 cut(s) 176
MvaI CCWGG 1 cut(s) 74
MvnI CGCG 1 cut(s) 160
NciI CCSGG 1 cut(s) 222
NdeII GATC 1 cut(s) 95
NlaIII CATG 2 cut(s) 186, 249
NlaIV GGNNCC 1 cut(s) 97
NmuCI GTSAC 2 cut(s) 134, 233
NspI RCATGY 2 cut(s) 186, 249
PctI GAATGC 1 cut(s) 176
PkrI GCNGC 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 97
PsuI RGATCY 1 cut(s) 95
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
SatI GCNGC 1 cut(s) 161
Sau3AI GATC 1 cut(s) 95
ScrFI CCNGG 2 cut(s) 74, 222
SduI GDGCHC 1 cut(s) 16
SetI ASST 3 cut(s) 78, 141, 194
Sse9I AATT 1 cut(s) 18
SsiI CCGC 2 cut(s) 66, 160
SspMI CTAG 1 cut(s) 201
StyD4I CCNGG 2 cut(s) 72, 220
TaaI ACNGT 1 cut(s) 278
TaiI ACGT 2 cut(s) 141, 194
TasI AATT 1 cut(s) 18
TauI GCSGC 1 cut(s) 163
TseFI GTSAC 2 cut(s) 134, 233
Tsp45I GTSAC 2 cut(s) 134, 233
TspDTI ATGAA 2 cut(s) 183, 255
XceI RCATGY 2 cut(s) 186, 249
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.