Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004300

Physical Location & Seq

Genomic Coordinates Forward (+)

27843123 .. 27843620

Gene Structure 498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g38490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGTTCAAGGCTCTAGTTGCTAAAATTATCATTTCTCTTGTCGTCCTCCAACTCACTACTTTTGAAGTTGATGCACAAAGGTTAATTTATGAACTGATTTACATGAACTGCATAGATTGTCATGGAGCGTGTAATGTAAGATGCGGATTATCATTGAGGCCAAACTTGTGCAAGAGGACATGTGGAATGTGTTGTACTAGATGCCATTGTGTTCCGTTCGACACTTTTGGCCATTATGATGAATGTCCTTGCTATCGCGATATGAAGACTCACCGCGGCCAACCCAAATACCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009741 GO:0009826 GO:0009987 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0030312 GO:0032502 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071840 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GASA

Protein Analysis

99

Amino Acids

11.29

Weight (kDa)

8.47

Isoelectric Point (pI)

51.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GASA	PF02704	39 - 98	2e-18	Gibberellin regulated protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18420 AT2G18420 AT4G09600 AT4G09610
fragaria_vesca	FvH4_1g11830 FvH4_2g38490 FvH4_2g38500 FvH4_2g38500
malus_domestica	MD00G1092400.v1.1 MD02G1132300.v1.1 MD02G1132400.v1.1 MD15G1012400.v1.1 MD15G1012600.v1.1 MD15G1246100.v1.1
prunus_persica	Prupe.1G365700_v2.0.a1 Prupe.7G168200_v2.0.a1
pyrus_communis	pycom02g10390 pycom15g21600
rosa_chinensis	RchiOBHm_Chr2g0099441 RchiOBHm_Chr6g0302811
rosa_laevigata	RLG00000016882
rosa_multiflora	Rmu_co8500929.1_g000001 Rmu_sc0002487.1_g000014
rosa_roxburghii	Rroxscaffold_7G00165300
rosa_rugosa	Rorug06G0317400
rosa_samantha	Rh2AG129500 Rh2BG132500 Rh2CG133300 Rh2DG133600 Rh6AG430600
rosa_wichuraiana	Rw2G009970 Rw6G037300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	258, 276
AciI	CCGC	3 cut(s)	144, 274, 276
AcoI	YGGCCR	2 cut(s)	229, 277
AfaI	GTAC	1 cut(s)	196
AflIII	ACRYGT	1 cut(s)	179
AgsI	TTSAA	2 cut(s)	7, 65
AoxI	GGCC	3 cut(s)	158, 229, 277
AsuHPI	GGTGA	1 cut(s)	263
BalI	TGGCCA	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	272
BfaI	CTAG	2 cut(s)	14, 198
BisI	GCNGC	1 cut(s)	277
BlsI	GCNGC	1 cut(s)	278
BmsI	GCATC	3 cut(s)	61, 131, 191
BpiI	GAAGAC	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	274
BseDI	CCNNGG	1 cut(s)	274
Bsh1236I	CGCG	2 cut(s)	258, 276
BshFI	GGCC	3 cut(s)	160, 231, 279
BsnI	GGCC	3 cut(s)	160, 231, 279
Bsp68I	TCGCGA	1 cut(s)	258
BspACI	CCGC	3 cut(s)	144, 274, 276
BspANI	GGCC	3 cut(s)	160, 231, 279
BspFNI	CGCG	2 cut(s)	258, 276
BssECI	CCNNGG	1 cut(s)	274
BstDSI	CCRYGG	1 cut(s)	274
BstFNI	CGCG	2 cut(s)	258, 276
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNSI	RCATGY	1 cut(s)	183
BstUI	CGCG	2 cut(s)	258, 276
BstV2I	GAAGAC	1 cut(s)	272
BsuRI	GGCC	3 cut(s)	160, 231, 279
BtgI	CCRYGG	1 cut(s)	274
BtuMI	TCGCGA	1 cut(s)	258
Cfr42I	CCGCGG	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	3 cut(s)	103, 122, 180
CviJI	RGCY	4 cut(s)	11, 160, 231, 279
CviKI_1	RGCY	4 cut(s)	11, 160, 231, 279
CviQI	GTAC	1 cut(s)	195
EaeI	YGGCCR	2 cut(s)	229, 277
FaeI	CATG	3 cut(s)	106, 125, 183
FaiI	YATR	7 cut(s)	90, 104, 113, 123, 181, 237, 263
FatI	CATG	3 cut(s)	102, 121, 179
Fnu4HI	GCNGC	1 cut(s)	277
Fsp4HI	GCNGC	1 cut(s)	277
FspBI	CTAG	2 cut(s)	14, 198
GluI	GCNGC	1 cut(s)	277
HaeIII	GGCC	3 cut(s)	160, 231, 279
Hin1II	CATG	3 cut(s)	106, 125, 183
HinfI	GANTC	1 cut(s)	268
HphI	GGTGA	1 cut(s)	263
Hpy188III	TCNNGA	1 cut(s)	257
HpyCH4V	TGCA	3 cut(s)	74, 111, 171
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
Hsp92II	CATG	3 cut(s)	106, 125, 183
KspI	CCGCGG	1 cut(s)	277
LmnI	GCTCC	1 cut(s)	125
LweI	GCATC	3 cut(s)	61, 131, 191
MaeI	CTAG	2 cut(s)	14, 198
MboII	GAAGA	1 cut(s)	277
MlsI	TGGCCA	1 cut(s)	231
MluCI	AATT	2 cut(s)	24, 84
MluNI	TGGCCA	1 cut(s)	231
MlyI	GAGTC	1 cut(s)	262
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	3 cut(s)	56, 150, 168
Mox20I	TGGCCA	1 cut(s)	231
MscI	TGGCCA	1 cut(s)	231
MseI	TTAA	2 cut(s)	83, 295
MslI	CAYNNNNRTG	1 cut(s)	237
Msp20I	TGGCCA	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	276
MvnI	CGCG	2 cut(s)	258, 276
MwoI	GCNNNNNNNGC	1 cut(s)	17
NlaIII	CATG	3 cut(s)	106, 125, 183
NruI	TCGCGA	1 cut(s)	258
NspI	RCATGY	1 cut(s)	183
PciI	ACATGT	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	278
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
PscI	ACATGT	1 cut(s)	179
RruI	TCGCGA	1 cut(s)	258
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
RseI	CAYNNNNRTG	1 cut(s)	237
SacII	CCGCGG	1 cut(s)	277
SaqAI	TTAA	2 cut(s)	83, 295
SatI	GCNGC	1 cut(s)	277
SchI	GAGTC	1 cut(s)	262
SetI	ASST	1 cut(s)	83
SfaNI	GCATC	3 cut(s)	61, 131, 191
Sfr303I	CCGCGG	1 cut(s)	277
SgrBI	CCGCGG	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	237
Sse9I	AATT	2 cut(s)	24, 84
SsiI	CCGC	3 cut(s)	144, 274, 276
SspMI	CTAG	2 cut(s)	14, 198
TaqI	TCGA	1 cut(s)	219
TasI	AATT	2 cut(s)	24, 84
TatI	WGTACW	1 cut(s)	194
TauI	GCSGC	1 cut(s)	279
Tru1I	TTAA	2 cut(s)	83, 295
Tru9I	TTAA	2 cut(s)	83, 295
TspDTI	ATGAA	4 cut(s)	105, 119, 255, 278
TspGWI	ACGGA	1 cut(s)	204
XceI	RCATGY	1 cut(s)	183
XspI	CTAG	2 cut(s)	14, 198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.