MD15G1012600.v1.1

Gibberellin-regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0004300
Physical Location & Seq
Forward (+)
701359 .. 701556
198 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1012600.v1.1.491

Sequence Viewer

Length: 198 bp
ATGGTGATATTTCCAGACTGTGACAGAGCTTGTGTTGTGAGGTGCTCAAAATTGTCAAGGCCTAATCTGTGCCACAGGGCATGCGGGACGTGTTGTAGGAGATGCTTCTGTGTTCCATCTGGTACTTTCGGCAACTATGACGTATGCCCTTGTTACAGAGACATGACTACCCGTGGAGGCATACACAAATGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

66

Amino Acids

7.28

Weight (kDa)

8.82

Isoelectric Point (pI)

57.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 6 - 65 4e-22 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 84
AfaI GTAC 1 cut(s) 124
AflIII ACRYGT 1 cut(s) 89
AjiI CACGTC 1 cut(s) 90
AluBI AGCT 1 cut(s) 29
AluI AGCT 1 cut(s) 29
Alw21I GWGCWC 1 cut(s) 47
Alw26I GTCTC 1 cut(s) 153
AoxI GGCC 1 cut(s) 59
AsuHPI GGTGA 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 47
BccI CCATC 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 153
BmgBI CACGTC 1 cut(s) 90
BmsI GCATC 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 172
BseDI CCNNGG 1 cut(s) 172
BshFI GGCC 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 47
BslFI GGGAC 1 cut(s) 100
BsmAI GTCTC 1 cut(s) 153
BsmFI GGGAC 1 cut(s) 100
BsnI GGCC 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 47
BspACI CCGC 1 cut(s) 84
BspANI GGCC 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 172
Bst4CI ACNGT 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 82
BstDSI CCRYGG 1 cut(s) 172
BstMAI GTCTC 1 cut(s) 153
BstNSI RCATGY 1 cut(s) 84
BsuRI GGCC 1 cut(s) 61
BtgI CCRYGG 1 cut(s) 172
BtrI CACGTC 1 cut(s) 90
Cac8I GCNNGC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 123
CviAII CATG 2 cut(s) 81, 163
CviJI RGCY 2 cut(s) 29, 61
CviKI_1 RGCY 2 cut(s) 29, 61
CviQI GTAC 1 cut(s) 123
Eco147I AGGCCT 1 cut(s) 61
FaeI CATG 2 cut(s) 84, 166
FaiI YATR 5 cut(s) 82, 138, 145, 164, 182
FaqI GGGAC 1 cut(s) 100
FatI CATG 2 cut(s) 80, 162
FauI CCCGC 1 cut(s) 77
HaeIII GGCC 1 cut(s) 61
Hin1II CATG 2 cut(s) 84, 166
HphI GGTGA 1 cut(s) 16
Hpy188III TCNNGA 1 cut(s) 14
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4IV ACGT 2 cut(s) 89, 141
HpySE526I ACGT 2 cut(s) 89, 141
Hsp92II CATG 2 cut(s) 84, 166
LpnPI CCDG 3 cut(s) 27, 61, 105
LweI GCATC 1 cut(s) 92
MaeII ACGT 2 cut(s) 89, 141
MaeIII GTNAC 2 cut(s) 20, 152
MhlI GDGCHC 1 cut(s) 47
MluCI AATT 1 cut(s) 50
MnlI CCTC 2 cut(s) 33, 170
MseI TTAA 1 cut(s) 196
NlaIII CATG 2 cut(s) 84, 166
NmuCI GTSAC 1 cut(s) 20
NspI RCATGY 1 cut(s) 84
PaeI GCATGC 1 cut(s) 84
PceI AGGCCT 1 cut(s) 61
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
SaqAI TTAA 1 cut(s) 196
SduI GDGCHC 1 cut(s) 47
SetI ASST 4 cut(s) 31, 44, 92, 144
SfaNI GCATC 1 cut(s) 92
SphI GCATGC 1 cut(s) 84
Sse9I AATT 1 cut(s) 50
SseBI AGGCCT 1 cut(s) 61
SsiI CCGC 1 cut(s) 84
StuI AGGCCT 1 cut(s) 61
TaaI ACNGT 1 cut(s) 20
TaiI ACGT 2 cut(s) 92, 144
TasI AATT 1 cut(s) 50
Tru1I TTAA 1 cut(s) 196
Tru9I TTAA 1 cut(s) 196
TseFI GTSAC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 20
XceI RCATGY 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.