MD02G1132300.v1.1

Gibberellin-regulated protein 11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0004300
Physical Location & Seq
Forward (+)
10704766 .. 10706117
1352 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1132300.v1.1.491

Sequence Viewer

Length: 321 bp
ATGGCTTTGTTATCAAGAACGTTCATGGCTTCCATGCTTGTTTCTTTTATGCTTGTTCAATATTTCACTGAAGCAGCTGATCACCAGTTTGAAATGATGGGCGTCAATGAATCACTGAGCCCCCAGCCCCCAACAATAGATTGTAGAGTGGCATGTGAAGGAAGGTGCAAGCTATCAAAGAGGCCTCATCTTTGCAAAAGGGCATGTGGGAGTTGTTGTCACAAGTGCAGTTGTGTTCCTCCAGGCACTTCTGGCAACTATGAGTCTTGTCCTTGCTATTTTAACCTCAAAACCCCAAGGCAAACCCGCAAGTGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

107

Amino Acids

11.85

Weight (kDa)

8.78

Isoelectric Point (pI)

61.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 47 - 106 3.1e-19 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 307
AclI AACGTT 1 cut(s) 20
AcuI CTGAAG 1 cut(s) 90
AcyI GRCGYC 1 cut(s) 102
AgsI TTSAA 2 cut(s) 59, 92
AjnI CCWGG 1 cut(s) 241
AluBI AGCT 2 cut(s) 77, 172
AluI AGCT 2 cut(s) 77, 172
AoxI GGCC 1 cut(s) 182
ApeKI GCWGC 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 74
BaeGI GKGCMC 1 cut(s) 317
BanII GRGCYC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 86
BccI CCATC 1 cut(s) 91
BciT130I CCWGG 1 cut(s) 243
BclI TGATCA 1 cut(s) 79
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 243
BpmI CTGGAG 1 cut(s) 225
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 296
BsaXI ACNNNNNCTCC 2 cut(s) 202, 232
Bse1I ACTGG 1 cut(s) 85
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 296
BseMII CTCAG 1 cut(s) 107
BseNI ACTGG 1 cut(s) 85
BseSI GKGCMC 1 cut(s) 317
BseXI GCAGC 1 cut(s) 86
BseYI CCCAGC 1 cut(s) 123
BsgI GTGCAG 1 cut(s) 247
BshFI GGCC 1 cut(s) 184
BsnI GGCC 1 cut(s) 184
Bsp1286I GDGCHC 2 cut(s) 122, 317
Bsp143I GATC 1 cut(s) 79
BspACI CCGC 1 cut(s) 307
BspANI GGCC 1 cut(s) 184
BspCNI CTCAG 1 cut(s) 108
BsrI ACTGG 1 cut(s) 85
BssECI CCNNGG 1 cut(s) 296
BssMI GATC 1 cut(s) 79
BssNI GRCGYC 1 cut(s) 102
BssT1I CCWWGG 1 cut(s) 296
Bst2UI CCWGG 1 cut(s) 243
BstACI GRCGYC 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 170
BstDEI CTNAG 1 cut(s) 116
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 1 cut(s) 252
BstNI CCWGG 1 cut(s) 243
BstNSI RCATGY 2 cut(s) 156, 207
BstSCI CCNGG 1 cut(s) 241
BstSLI GKGCMC 1 cut(s) 317
BstV1I GCAGC 1 cut(s) 86
BsuRI GGCC 1 cut(s) 184
BtsIMutI CAGTG 2 cut(s) 66, 113
Cac8I GCNNGC 1 cut(s) 170
CseI GACGC 1 cut(s) 91
CviAII CATG 4 cut(s) 25, 34, 153, 204
CviJI RGCY 7 cut(s) 5, 29, 77, 120, 127, 172, 184
CviKI_1 RGCY 7 cut(s) 5, 29, 77, 120, 127, 172, 184
DdeI CTNAG 1 cut(s) 116
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 296
Eco147I AGGCCT 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 296
EcoT38I GRGCYC 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 296
FaeI CATG 4 cut(s) 28, 37, 156, 207
FaiI YATR 6 cut(s) 26, 35, 50, 154, 205, 261
FatI CATG 4 cut(s) 24, 33, 152, 203
FauI CCCGC 1 cut(s) 314
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 1 cut(s) 75
FriOI GRGCYC 1 cut(s) 122
Fsp4HI GCNGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 75
GsaI CCCAGC 1 cut(s) 127
GsuI CTGGAG 1 cut(s) 225
HaeIII GGCC 1 cut(s) 184
HgaI GACGC 1 cut(s) 91
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 4 cut(s) 28, 37, 156, 207
HinfI GANTC 2 cut(s) 110, 263
HphI GGTGA 1 cut(s) 74
Hpy188III TCNNGA 1 cut(s) 15
HpyAV CCTTC 2 cut(s) 152, 156
HpyCH4IV ACGT 1 cut(s) 20
HpyCH4V TGCA 3 cut(s) 168, 195, 228
HpyF10VI GCNNNNNNNGC 1 cut(s) 252
HpyF3I CTNAG 1 cut(s) 116
HpySE526I ACGT 1 cut(s) 20
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 4 cut(s) 28, 37, 156, 207
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 1 cut(s) 79
LpnPI CCDG 5 cut(s) 98, 137, 228, 237, 255
Lsp1109I GCAGC 1 cut(s) 86
MaeII ACGT 1 cut(s) 20
MaeIII GTNAC 1 cut(s) 218
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MhlI GDGCHC 2 cut(s) 122, 317
MlyI GAGTC 1 cut(s) 272
MnlI CCTC 4 cut(s) 174, 195, 249, 296
MseI TTAA 2 cut(s) 282, 319
MspA1I CMGCKG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 243
MvaI CCWGG 1 cut(s) 243
MwoI GCNNNNNNNGC 1 cut(s) 252
NdeII GATC 1 cut(s) 79
NlaIII CATG 4 cut(s) 28, 37, 156, 207
NmuCI GTSAC 1 cut(s) 218
NspI RCATGY 2 cut(s) 156, 207
PceI AGGCCT 1 cut(s) 184
PfeI GAWTC 1 cut(s) 110
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
Psp1406I AACGTT 1 cut(s) 20
Psp6I CCWGG 1 cut(s) 241
PspFI CCCAGC 1 cut(s) 123
PspGI CCWGG 1 cut(s) 241
PvuII CAGCTG 1 cut(s) 77
SaqAI TTAA 2 cut(s) 282, 319
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 1 cut(s) 79
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 1 cut(s) 243
SduI GDGCHC 2 cut(s) 122, 317
SetI ASST 5 cut(s) 23, 79, 167, 174, 288
SseBI AGGCCT 1 cut(s) 184
SsiI CCGC 1 cut(s) 307
SspI AATATT 1 cut(s) 62
StuI AGGCCT 1 cut(s) 184
StyD4I CCNGG 1 cut(s) 241
StyI CCWWGG 1 cut(s) 296
TaiI ACGT 1 cut(s) 23
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 2 cut(s) 282, 319
Tru9I TTAA 2 cut(s) 282, 319
TscAI CASTG 2 cut(s) 73, 120
TseFI GTSAC 1 cut(s) 218
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 218
TspDTI ATGAA 2 cut(s) 13, 123
TspRI CASTG 2 cut(s) 73, 120
XceI RCATGY 2 cut(s) 156, 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.