Prupe.1G365700_v2.0.a1

Gibberellin-regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0004300
Physical Location & Seq
Forward (+)
33552077 .. 33553167
1091 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G365700.1

Sequence Viewer

Length: 330 bp
ATGGCCAAGAAGATGATGTTGAAGGTTGTAATTCTCGTTTCTCTTCTCATTCTCCGACTCGCTGATTCTCAAGAAACGGTGACCACACCTCCTGTTGAAAGCCCTCATCCTCCTCCTGTTGAAAGCCCTCATCCTCCTCCAAAAATAGAGTGTGATGGAGAATGTAATCGAAGGTGCGAATTATCGTCAAGGCCGAATTTATGCAAGAGGGCATGCGGGACGTGCTGCGAGAGATGCAATTGCGTTCCACCAGGCACTTCTGGTCACTATGAAACCTGCCCTTGTTACGCCAATATGACCACCCACAGGGGCCTACACAAATGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

110

Amino Acids

12.0

Weight (kDa)

8.28

Isoelectric Point (pI)

85.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 284
AciI CCGC 1 cut(s) 216
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 196
AfiI CCNNNNNNNGG 1 cut(s) 306
AgsI TTSAA 3 cut(s) 22, 98, 122
AjiI CACGTC 1 cut(s) 222
AjnI CCWGG 1 cut(s) 250
AoxI GGCC 3 cut(s) 3, 191, 310
ApeKI GCWGC 1 cut(s) 225
ApoI RAATTY 1 cut(s) 196
AspS9I GGNCC 1 cut(s) 310
AsuHPI GGTGA 1 cut(s) 91
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 212
BccI CCATC 1 cut(s) 149
BciT130I CCWGG 1 cut(s) 252
BfuAI ACCTGC 1 cut(s) 284
BisI GCNGC 1 cut(s) 226
BlsI GCNGC 1 cut(s) 227
Bme1390I CCNGG 1 cut(s) 252
BmgBI CACGTC 1 cut(s) 222
BmgT120I GGNCC 1 cut(s) 310
BmiI GGNNCC 1 cut(s) 311
BmrFI CCNGG 1 cut(s) 252
BmsI GCATC 1 cut(s) 224
BpuEI CTTGAG 1 cut(s) 54
BsaXI ACNNNNNCTCC 2 cut(s) 73, 103
Bsc4I CCNNNNNNNGG 1 cut(s) 306
BseBI CCWGG 1 cut(s) 252
BseGI GGATG 2 cut(s) 106, 130
BseLI CCNNNNNNNGG 1 cut(s) 306
BseRI GAGGAG 2 cut(s) 102, 126
BseXI GCAGC 1 cut(s) 212
BshFI GGCC 3 cut(s) 5, 193, 312
BslFI GGGAC 1 cut(s) 232
BslI CCNNNNNNNGG 1 cut(s) 306
BsmFI GGGAC 1 cut(s) 232
BsnI GGCC 3 cut(s) 5, 193, 312
BspACI CCGC 1 cut(s) 216
BspANI GGCC 3 cut(s) 5, 193, 312
BspLI GGNNCC 1 cut(s) 311
BspMI ACCTGC 1 cut(s) 284
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 1 cut(s) 79
Bst6I CTCTTC 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 214
BstEII GGTNACC 1 cut(s) 79
BstF5I GGATG 2 cut(s) 106, 130
BstMWI GCNNNNNNNGC 2 cut(s) 222, 234
BstNI CCWGG 1 cut(s) 252
BstNSI RCATGY 1 cut(s) 216
BstPI GGTNACC 1 cut(s) 79
BstSCI CCNGG 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 212
BsuRI GGCC 3 cut(s) 5, 193, 312
BtrI CACGTC 1 cut(s) 222
BtsCI GGATG 2 cut(s) 106, 130
BveI ACCTGC 1 cut(s) 284
Cac8I GCNNGC 1 cut(s) 214
Cfr13I GGNCC 1 cut(s) 310
CviAII CATG 1 cut(s) 213
CviJI RGCY 5 cut(s) 5, 102, 126, 193, 312
CviKI_1 RGCY 5 cut(s) 5, 102, 126, 193, 312
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
Eco91I GGTNACC 1 cut(s) 79
EcoO109I RGGNCCY 1 cut(s) 310
EcoO65I GGTNACC 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 250
FaeI CATG 1 cut(s) 216
FaiI YATR 4 cut(s) 202, 214, 270, 296
FaqI GGGAC 1 cut(s) 232
FatI CATG 1 cut(s) 212
FauI CCCGC 1 cut(s) 209
Fnu4HI GCNGC 1 cut(s) 226
FokI GGATG 2 cut(s) 93, 117
Fsp4HI GCNGC 1 cut(s) 226
GluI GCNGC 1 cut(s) 226
HaeIII GGCC 3 cut(s) 5, 193, 312
Hin1II CATG 1 cut(s) 216
HinfI GANTC 2 cut(s) 57, 65
HphI GGTGA 1 cut(s) 91
Hpy188I TCNGA 1 cut(s) 56
Hpy188III TCNNGA 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 16, 165
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4IV ACGT 1 cut(s) 221
HpyCH4V TGCA 2 cut(s) 204, 237
HpyF10VI GCNNNNNNNGC 2 cut(s) 222, 234
HpySE526I ACGT 1 cut(s) 221
Hsp92II CATG 1 cut(s) 216
LpnPI CCDG 7 cut(s) 105, 129, 237, 246, 264, 289, 292
Lsp1109I GCAGC 1 cut(s) 212
LweI GCATC 1 cut(s) 224
MaeII ACGT 1 cut(s) 221
MaeIII GTNAC 3 cut(s) 79, 263, 284
MboII GAAGA 2 cut(s) 22, 35
MfeI CAATTG 1 cut(s) 238
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 30, 179, 196, 238
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 51
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 8 cut(s) 99, 114, 120, 123, 138, 144, 147, 201
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 328
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 252
MunI CAATTG 1 cut(s) 238
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 222, 234
NlaIII CATG 1 cut(s) 216
NlaIV GGNNCC 1 cut(s) 311
NmuCI GTSAC 2 cut(s) 79, 263
NspI RCATGY 1 cut(s) 216
PaeI GCATGC 1 cut(s) 216
PcsI WCGNNNNNNNCGW 1 cut(s) 191
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 227
PleI GAGTC 1 cut(s) 51
PpsI GAGTC 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 250
PspEI GGTNACC 1 cut(s) 79
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 1 cut(s) 311
PspPI GGNCC 1 cut(s) 310
SaqAI TTAA 1 cut(s) 328
SatI GCNGC 1 cut(s) 226
Sau96I GGNCC 1 cut(s) 310
SchI GAGTC 1 cut(s) 51
ScrFI CCNGG 1 cut(s) 252
SetI ASST 5 cut(s) 27, 91, 176, 224, 278
SfaNI GCATC 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
SphI GCATGC 1 cut(s) 216
Sse9I AATT 4 cut(s) 30, 179, 196, 238
SsiI CCGC 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 250
TaaI ACNGT 1 cut(s) 79
TaiI ACGT 1 cut(s) 224
TaqI TCGA 1 cut(s) 169
TasI AATT 4 cut(s) 30, 179, 196, 238
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 1 cut(s) 328
Tru9I TTAA 1 cut(s) 328
TseFI GTSAC 2 cut(s) 79, 263
TseI GCWGC 1 cut(s) 225
Tsp45I GTSAC 2 cut(s) 79, 263
TspDTI ATGAA 1 cut(s) 285
XapI RAATTY 1 cut(s) 196
XceI RCATGY 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.