Rorug06G0317400

Gibberellin-regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004300
Physical Location & Seq
Reverse (-)
46908424 .. 46910730
2307 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0317400.1

Sequence Viewer

Length: 1383 bp
ATGGACGCTAGAAACCCTAAACCTCTGACCAAAACTACCGTCAAGGCTACCGCACGCCCAGCTCGAACTGCTACTCCTTCCATGGATGAAGTTACAGCCTCTTTTGCGGCCTCCTTGGCCCTTGCAACCAATGAGGTCGTGGATCTCTCACGATCTGCAAACTCTAAGGAACGACGGGGCAAGCAGTCCTATCTACTAGCCCGCCCACTGGCAGCCAAACCAGCCCCACTACAAGACCTCTGGCGTTTCTTTCGTCGGGTATGGGTGCTTGATAGGGATTTCAAGATTCAAGAGCGAGGGGAACACTGTTTTGTCCTTGCTTTTGACCTCAAACGGGATCGCAACAAGGTTTTACGTGGAGGACCGTGGCGCTTCAACCAAGCCCCGGTCGTGATAAAGGAGTATGATGGGATTGCACCGCCGCACTCGGTGGCCTTGAATGAGTTATTCTTCTGGGTACGCCTTACTGGTATACCACCACTCTTTGAGGATAAAGACACTATCCGCGATATTGCGGCTATAGCGGGCAAGGTCATGGAGTTAGATGATAAACTCTTTGACAATACTAGTAAGATCCGGGTTAGGGTTTCCCGGGAGCTCTCCAAGCCTTTTGATATGAAAAAGAAAGTCAAACTTGCACCGGGTGTGGAAGCAGAGATCAGTTTCTTCTTTGAAAACCTTGTGGGTAAGTGTAACTATTGTGATTTGATTTTCCATGAGCATGGTGTTTGTCCTGCAACAGATGGTAGGGCTCTTCCCCGTATGGAGCCAAACCCGGTACAACGAAAATTAGATATCACTGGTCCTTCTCTAAGTTTTATGCATAGCCATTTTGAGAAGGGCATGTTCAAGTTCCAGGGACTTCAAACCCCTATATTACCGACGGTGGCACGATCCATTTTTCACTCCAAAGAGCAGGGTGGCCGTAAACCTGTGGTGTTGCAGGGATCGGATAGTAGATTGGCCTCCAGCAGGGATGAGGAGAATCCCACCTTGGCTTTGGTTTCAGTGGAGTCAACTGAGTCAACTAAGCGAGATTGGCAGCCCTCTGACTATCGCTCCCCAACAAAGCTGAAAGTACTATTGCCTGAGTTGTTTACTTCCTTGGGATGCAATGAAGCTCCCTCCAAGAAATTGAAGATGCCGGAGTTCAGTTCTAAATTTACTGCGAATTCCCTGGGTTTGATTGAAGCTCCGGGTAGCATCCTTGTTCCAAAGTTTGAGACTAACAGTTCTGGGATCAAAAAGAAACAAGGCAGGCCCTTGGGATCCAAGAACAAAAAGCCACCGAAGCCGAAAAATGTTGCTGCTGCCCAGGAAGCTTGCTTGGCTTTTTTAACTAAACCTCCTAGCTCTAGTGTCAAGGGCAAGGAGAAAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

460

Amino Acids

51.3

Weight (kDa)

9.79

Isoelectric Point (pI)

42.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 63 - 135 8.2e-11 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 472
AccII CGCG 1 cut(s) 507
AciI CCGC 8 cut(s) 51, 107, 202, 419, 422, 505, 515, 524
AclWI GGATC 8 cut(s) 150, 345, 568, 888, 955, 1247, 1263, 1276
AcoI YGGCCR 1 cut(s) 922
AcsI RAATTY 2 cut(s) 1160, 1171
AdeI CACNNNGTG 2 cut(s) 430, 644
AfaI GTAC 3 cut(s) 459, 780, 1080
AfiI CCNNNNNNNGG 5 cut(s) 208, 334, 385, 583, 972
AgsI TTSAA 9 cut(s) 283, 290, 376, 439, 674, 850, 866, 1138, 1190
AhlI ACTAGT 1 cut(s) 566
AjnI CCWGG 3 cut(s) 855, 1176, 1314
AjuI GAANNNNNNNTTGG 2 cut(s) 977, 1009
AloI GAACNNNNNNTCC 2 cut(s) 58, 90
AluBI AGCT 7 cut(s) 62, 598, 1072, 1121, 1193, 1322, 1353
AluI AGCT 7 cut(s) 62, 598, 1072, 1121, 1193, 1322, 1353
Alw21I GWGCWC 1 cut(s) 600
Alw26I GTCTC 1 cut(s) 1217
AlwI GGATC 8 cut(s) 150, 345, 568, 888, 955, 1247, 1263, 1276
Ama87I CYCGRG 1 cut(s) 591
AoxI GGCC 6 cut(s) 108, 117, 432, 922, 963, 1259
ApeKI GCWGC 4 cut(s) 212, 1042, 1307, 1310
ApoI RAATTY 2 cut(s) 1160, 1171
ArsI GACNNNNNNTTYG 2 cut(s) 24, 56
AspLEI GCGC 1 cut(s) 372
AspS9I GGNCC 4 cut(s) 118, 362, 803, 1260
AsuC2I CCSGG 7 cut(s) 386, 578, 592, 593, 642, 776, 1197
AvaI CYCGRG 1 cut(s) 591
AvaII GGWCC 2 cut(s) 362, 803
BamHI GGATCC 1 cut(s) 1268
BanII GRGCYC 2 cut(s) 600, 754
Bbv12I GWGCWC 1 cut(s) 600
BbvI GCAGC 4 cut(s) 224, 1054, 1294, 1297
BccI CCATC 2 cut(s) 401, 737
BceAI ACGGC 1 cut(s) 909
BciT130I CCWGG 3 cut(s) 857, 1178, 1316
BcnI CCSGG 7 cut(s) 386, 578, 592, 593, 642, 776, 1197
BcoDI GTCTC 1 cut(s) 1217
BcuI ACTAGT 1 cut(s) 566
BfaI CTAG 5 cut(s) 9, 197, 567, 1350, 1356
BfmI CTRYAG 1 cut(s) 519
BfoI RGCGCY 1 cut(s) 373
BglI GCCNNNNNGGC 1 cut(s) 116
BisI GCNGC 7 cut(s) 108, 213, 422, 516, 1043, 1308, 1311
BlsI GCNGC 7 cut(s) 109, 214, 423, 517, 1044, 1309, 1312
BmcAI AGTACT 1 cut(s) 1080
Bme18I GGWCC 2 cut(s) 362, 803
BmeT110I CYCGRG 1 cut(s) 591
BmgT120I GGNCC 4 cut(s) 118, 362, 803, 1260
BmiI GGNNCC 2 cut(s) 768, 1270
BmsI GCATC 3 cut(s) 1100, 1131, 1212
BpmI CTGGAG 1 cut(s) 952
BpuMI CCSGG 7 cut(s) 386, 578, 592, 593, 642, 776, 1197
BsaAI YACGTR 1 cut(s) 356
BsaXI ACNNNNNCTCC 6 cut(s) 58, 88, 1043, 1073, 1330, 1360
Bsc4I CCNNNNNNNGG 5 cut(s) 208, 334, 385, 583, 972
Bse1I ACTGG 3 cut(s) 213, 472, 805
Bse3DI GCAATG 1 cut(s) 1120
BseBI CCWGG 3 cut(s) 857, 1178, 1316
BseGI GGATG 4 cut(s) 91, 982, 1115, 1203
BseLI CCNNNNNNNGG 5 cut(s) 208, 334, 385, 583, 972
BseMI GCAATG 1 cut(s) 1120
BseMII CTCAG 2 cut(s) 1011, 1080
BseNI ACTGG 3 cut(s) 213, 472, 805
BseRI GAGGAG 1 cut(s) 995
BseXI GCAGC 4 cut(s) 224, 1054, 1294, 1297
BseYI CCCAGC 1 cut(s) 58
Bsh1236I CGCG 1 cut(s) 507
Bsh1285I CGRYCG 1 cut(s) 390
BshFI GGCC 6 cut(s) 110, 119, 434, 924, 965, 1261
BsiEI CGRYCG 1 cut(s) 390
BsiHKAI GWGCWC 1 cut(s) 600
BsiHKCI CYCGRG 1 cut(s) 591
BsiSI CCGG 7 cut(s) 386, 577, 592, 641, 776, 1145, 1196
BslFI GGGAC 1 cut(s) 873
BslI CCNNNNNNNGG 5 cut(s) 208, 334, 385, 583, 972
BsmAI GTCTC 1 cut(s) 1217
BsmFI GGGAC 1 cut(s) 873
BsnI GGCC 6 cut(s) 110, 119, 434, 924, 965, 1261
BsoBI CYCGRG 1 cut(s) 591
Bsp1286I GDGCHC 2 cut(s) 600, 754
Bsp143I GATC 9 cut(s) 142, 152, 337, 573, 657, 893, 947, 1239, 1268
Bsp19I CCATGG 1 cut(s) 81
BspACI CCGC 8 cut(s) 51, 107, 202, 419, 422, 505, 515, 524
BspANI GGCC 6 cut(s) 110, 119, 434, 924, 965, 1261
BspCNI CTCAG 2 cut(s) 1012, 1081
BspFNI CGCG 1 cut(s) 507
BspLI GGNNCC 2 cut(s) 768, 1270
BspPI GGATC 8 cut(s) 150, 345, 568, 888, 955, 1247, 1263, 1276
BspQI GCTCTTC 1 cut(s) 759
BsrDI GCAATG 1 cut(s) 1120
BsrI ACTGG 3 cut(s) 213, 472, 805
BssMI GATC 9 cut(s) 142, 152, 337, 573, 657, 893, 947, 1239, 1268
BssNAI GTATAC 1 cut(s) 473
BssT1I CCWWGG 5 cut(s) 81, 114, 993, 1104, 1263
Bst1107I GTATAC 1 cut(s) 473
Bst2UI CCWGG 3 cut(s) 857, 1178, 1316
Bst4CI ACNGT 5 cut(s) 40, 308, 366, 886, 1232
Bst6I CTCTTC 1 cut(s) 759
BstBAI YACGTR 1 cut(s) 356
BstC8I GCNNGC 6 cut(s) 55, 182, 202, 526, 1259, 1324
BstDEI CTNAG 5 cut(s) 165, 812, 1020, 1029, 1089
BstDSI CCRYGG 2 cut(s) 81, 365
BstENI CCTNNNNNAGG 1 cut(s) 970
BstF5I GGATG 4 cut(s) 91, 982, 1115, 1203
BstFNI CGCG 1 cut(s) 507
BstH2I RGCGCY 1 cut(s) 373
BstHHI GCGC 1 cut(s) 372
BstKTI GATC 9 cut(s) 145, 155, 340, 576, 660, 896, 950, 1242, 1271
BstMAI GTCTC 1 cut(s) 1217
BstMBI GATC 9 cut(s) 142, 152, 337, 573, 657, 893, 947, 1239, 1268
BstMCI CGRYCG 1 cut(s) 390
BstNI CCWGG 3 cut(s) 857, 1178, 1316
BstNSI RCATGY 1 cut(s) 847
BstSFI CTRYAG 1 cut(s) 519
BstUI CGCG 1 cut(s) 507
BstV1I GCAGC 4 cut(s) 224, 1054, 1294, 1297
BstX2I RGATCY 3 cut(s) 142, 573, 1268
BstXI CCANNNNNNTGG 1 cut(s) 722
BstYI RGATCY 3 cut(s) 142, 573, 1268
BstZ17I GTATAC 1 cut(s) 473
BsuRI GGCC 6 cut(s) 110, 119, 434, 924, 965, 1261
BtgI CCRYGG 2 cut(s) 81, 365
BtsCI GGATG 4 cut(s) 91, 982, 1115, 1203
BtsIMutI CAGTG 4 cut(s) 206, 304, 798, 1014
Cac8I GCNNGC 6 cut(s) 55, 182, 202, 526, 1259, 1324
CfoI GCGC 1 cut(s) 372
Cfr13I GGNCC 4 cut(s) 118, 362, 803, 1260
Cfr9I CCCGGG 1 cut(s) 591
CseI GACGC 1 cut(s) 14
Csp6I GTAC 3 cut(s) 458, 779, 1079
CviAII CATG 5 cut(s) 82, 535, 716, 722, 844
CviQI GTAC 3 cut(s) 458, 779, 1079
DdeI CTNAG 5 cut(s) 165, 812, 1020, 1029, 1089
DpnI GATC 9 cut(s) 144, 154, 339, 575, 659, 895, 949, 1241, 1270
DpnII GATC 9 cut(s) 142, 152, 337, 573, 657, 893, 947, 1239, 1268
DraIII CACNNNGTG 2 cut(s) 430, 644
EaeI YGGCCR 1 cut(s) 922
Eam1104I CTCTTC 1 cut(s) 759
EarI CTCTTC 1 cut(s) 759
Ecl136II GAGCTC 1 cut(s) 598
Eco130I CCWWGG 5 cut(s) 81, 114, 993, 1104, 1263
Eco24I GRGCYC 2 cut(s) 600, 754
Eco32I GATATC 1 cut(s) 796
Eco47I GGWCC 2 cut(s) 362, 803
Eco53kI GAGCTC 1 cut(s) 598
Eco88I CYCGRG 1 cut(s) 591
EcoICRI GAGCTC 1 cut(s) 598
EcoNI CCTNNNNNAGG 1 cut(s) 970
EcoO109I RGGNCCY 1 cut(s) 1260
EcoRI GAATTC 1 cut(s) 1171
EcoRII CCWGG 3 cut(s) 855, 1176, 1314
EcoRV GATATC 1 cut(s) 796
EcoT14I CCWWGG 5 cut(s) 81, 114, 993, 1104, 1263
EcoT22I ATGCAT 1 cut(s) 825
EcoT38I GRGCYC 2 cut(s) 600, 754
ErhI CCWWGG 5 cut(s) 81, 114, 993, 1104, 1263
FaeI CATG 5 cut(s) 85, 538, 719, 725, 847
FalI AAGNNNNNCTT 2 cut(s) 618, 650
FaqI GGGAC 1 cut(s) 873
FatI CATG 5 cut(s) 81, 534, 715, 721, 843
FauI CCCGC 2 cut(s) 209, 517
FblI GTMKAC 1 cut(s) 472
Fnu4HI GCNGC 7 cut(s) 108, 213, 422, 516, 1043, 1308, 1311
FokI GGATG 4 cut(s) 98, 989, 1122, 1190
FriOI GRGCYC 2 cut(s) 600, 754
Fsp4HI GCNGC 7 cut(s) 108, 213, 422, 516, 1043, 1308, 1311
FspBI CTAG 5 cut(s) 9, 197, 567, 1350, 1356
GlaI GCGC 1 cut(s) 371
GluI GCNGC 7 cut(s) 108, 213, 422, 516, 1043, 1308, 1311
GsaI CCCAGC 1 cut(s) 62
GsuI CTGGAG 1 cut(s) 952
HaeII RGCGCY 1 cut(s) 373
HaeIII GGCC 6 cut(s) 110, 119, 434, 924, 965, 1261
HapII CCGG 7 cut(s) 386, 577, 592, 641, 776, 1145, 1196
HgaI GACGC 1 cut(s) 14
HhaI GCGC 1 cut(s) 372
Hin1II CATG 5 cut(s) 85, 538, 719, 725, 847
Hin6I GCGC 1 cut(s) 370
HinP1I GCGC 1 cut(s) 370
HincII GTYRAC 2 cut(s) 1017, 1026
HindII GTYRAC 2 cut(s) 1017, 1026
HindIII AAGCTT 1 cut(s) 1320
HinfI GANTC 4 cut(s) 286, 985, 1013, 1022
HpaII CCGG 7 cut(s) 386, 577, 592, 641, 776, 1145, 1196
Hpy166II GTNNAC 5 cut(s) 473, 929, 1017, 1026, 1098
Hpy188I TCNGA 3 cut(s) 27, 952, 1051
Hpy188III TCNNGA 4 cut(s) 150, 283, 290, 391
Hpy8I GTNNAC 5 cut(s) 473, 929, 1017, 1026, 1098
Hpy99I CGWCG 3 cut(s) 177, 258, 886
HpyAV CCTTC 3 cut(s) 87, 816, 832
HpyCH4III ACNGT 5 cut(s) 40, 308, 366, 886, 1232
HpyCH4IV ACGT 1 cut(s) 355
HpyCH4V TGCA 8 cut(s) 125, 158, 416, 638, 737, 823, 943, 1113
HpyF3I CTNAG 5 cut(s) 165, 812, 1020, 1029, 1089
HpySE526I ACGT 1 cut(s) 355
Hsp92II CATG 5 cut(s) 85, 538, 719, 725, 847
HspAI GCGC 1 cut(s) 370
Kzo9I GATC 9 cut(s) 142, 152, 337, 573, 657, 893, 947, 1239, 1268
LguI GCTCTTC 1 cut(s) 759
LmnI GCTCC 5 cut(s) 595, 766, 1064, 1126, 1198
Lsp1109I GCAGC 4 cut(s) 224, 1054, 1294, 1297
LweI GCATC 3 cut(s) 1100, 1131, 1212
MaeI CTAG 5 cut(s) 9, 197, 567, 1350, 1356
MaeII ACGT 1 cut(s) 355
MaeIII GTNAC 2 cut(s) 91, 692
MalI GATC 9 cut(s) 144, 154, 339, 575, 659, 895, 949, 1241, 1270
MboI GATC 9 cut(s) 142, 152, 337, 573, 657, 893, 947, 1239, 1268
MboII GAAGA 4 cut(s) 442, 658, 746, 1150
MflI RGATCY 3 cut(s) 142, 573, 1268
MhlI GDGCHC 2 cut(s) 600, 754
MluCI AATT 4 cut(s) 788, 1133, 1160, 1171
MlyI GAGTC 2 cut(s) 1022, 1031
Mph1103I ATGCAT 1 cut(s) 825
MseI TTAA 1 cut(s) 1337
MslI CAYNNNNRTG 1 cut(s) 720
MspI CCGG 7 cut(s) 386, 577, 592, 641, 776, 1145, 1196
MvaI CCWGG 3 cut(s) 857, 1178, 1316
MvnI CGCG 1 cut(s) 507
NciI CCSGG 7 cut(s) 386, 578, 592, 593, 642, 776, 1197
NcoI CCATGG 1 cut(s) 81
NdeII GATC 9 cut(s) 142, 152, 337, 573, 657, 893, 947, 1239, 1268
NlaIII CATG 5 cut(s) 85, 538, 719, 725, 847
NlaIV GGNNCC 2 cut(s) 768, 1270
NsiI ATGCAT 1 cut(s) 825
NspI RCATGY 1 cut(s) 847
PasI CCCWGGG 1 cut(s) 1177
PciSI GCTCTTC 1 cut(s) 759
PcsI WCGNNNNNNNCGW 1 cut(s) 61
PfeI GAWTC 2 cut(s) 286, 985
PkrI GCNGC 7 cut(s) 109, 214, 423, 517, 1044, 1309, 1312
PleI GAGTC 2 cut(s) 1021, 1030
PpsI GAGTC 2 cut(s) 1021, 1030
Ppu21I YACGTR 1 cut(s) 356
Psp124BI GAGCTC 1 cut(s) 600
Psp6I CCWGG 3 cut(s) 855, 1176, 1314
PspFI CCCAGC 1 cut(s) 58
PspGI CCWGG 3 cut(s) 855, 1176, 1314
PspN4I GGNNCC 2 cut(s) 768, 1270
PspPI GGNCC 4 cut(s) 118, 362, 803, 1260
PsuI RGATCY 3 cut(s) 142, 573, 1268
RsaI GTAC 3 cut(s) 459, 780, 1080
RsaNI GTAC 3 cut(s) 458, 779, 1079
RseI CAYNNNNRTG 1 cut(s) 720
SacI GAGCTC 1 cut(s) 600
SapI GCTCTTC 1 cut(s) 759
SaqAI TTAA 1 cut(s) 1337
SatI GCNGC 7 cut(s) 108, 213, 422, 516, 1043, 1308, 1311
Sau3AI GATC 9 cut(s) 142, 152, 337, 573, 657, 893, 947, 1239, 1268
Sau96I GGNCC 4 cut(s) 118, 362, 803, 1260
ScaI AGTACT 1 cut(s) 1080
SchI GAGTC 2 cut(s) 1022, 1031
SduI GDGCHC 2 cut(s) 600, 754
SfaNI GCATC 3 cut(s) 1100, 1131, 1212
SfcI CTRYAG 1 cut(s) 519
SfiI GGCCNNNNNGGCC 1 cut(s) 116
SinI GGWCC 2 cut(s) 362, 803
SmaI CCCGGG 1 cut(s) 593
SmiMI CAYNNNNRTG 1 cut(s) 720
SpeI ACTAGT 1 cut(s) 566
Sse9I AATT 4 cut(s) 788, 1133, 1160, 1171
SsiI CCGC 8 cut(s) 51, 107, 202, 419, 422, 505, 515, 524
SspMI CTAG 5 cut(s) 9, 197, 567, 1350, 1356
SstI GAGCTC 1 cut(s) 600
StyI CCWWGG 5 cut(s) 81, 114, 993, 1104, 1263
TaaI ACNGT 5 cut(s) 40, 308, 366, 886, 1232
TaiI ACGT 1 cut(s) 358
TaqI TCGA 1 cut(s) 64
TasI AATT 4 cut(s) 788, 1133, 1160, 1171
TatI WGTACW 1 cut(s) 1078
TauI GCSGC 3 cut(s) 110, 424, 518
TfiI GAWTC 2 cut(s) 286, 985
Tru1I TTAA 1 cut(s) 1337
Tru9I TTAA 1 cut(s) 1337
TscAI CASTG 4 cut(s) 213, 311, 805, 1014
TseI GCWGC 4 cut(s) 212, 1042, 1307, 1310
TspDTI ATGAA 3 cut(s) 102, 632, 1131
TspMI CCCGGG 1 cut(s) 591
TspRI CASTG 4 cut(s) 213, 311, 805, 1014
VpaK11BI GGWCC 2 cut(s) 362, 803
XagI CCTNNNNNAGG 1 cut(s) 970
XapI RAATTY 2 cut(s) 1160, 1171
XceI RCATGY 1 cut(s) 847
XcmI CCANNNNNNNNNTGG 2 cut(s) 136, 997
XmaI CCCGGG 1 cut(s) 591
XmiI GTMKAC 1 cut(s) 472
XspI CTAG 5 cut(s) 9, 197, 567, 1350, 1356
ZrmI AGTACT 1 cut(s) 1080
Zsp2I ATGCAT 1 cut(s) 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.