Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001660

Physical Location & Seq

Genomic Coordinates Forward (+)

8511486 .. 8513291

Gene Structure 1806 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G19730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAGAACAACAACTGTTTCTTGGTGAAGCAGTTCGGTAGAGGAAACTCTAAGGTTCAATTCAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTGGTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAGCTGTTGTGCTCGCCACCACCAAGACCAAGAAGCAGAACAAGCCTAAGCTCTCTGTCAACAAGTCTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGACTCAGCGCCATCAGCAAAGGTCTCAGGGTTGCCAAGTCCGGTGCCAAGCAAAGAAACAGACAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28e

Protein Analysis

143

Amino Acids

15.9

Weight (kDa)

10.58

Isoelectric Point (pI)

19.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L28e	PF01778	8 - 126	5.3e-37	Ribosomal L28e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19730 AT2G19730 AT2G19730 AT4G29410 AT4G29410
fragaria_vesca	FvH4_1g06820 FvH4_6g32910
malus_domestica	MD02G1072800.v1.1 MD07G1062600.v1.1 MD09G1196500.v1.1 MD15G1202600.v1.1
prunus_persica	Prupe.3G052900_v2.0.a1 Prupe.7G214600_v2.0.a1 Prupe.7G214600_v2.0.a1
pyrus_communis	pycom09g11360 pycom15g18000 pycom17g18620
rosa_chinensis	RchiOBHm_Chr1g0323731 RchiOBHm_Chr2g0092591 RchiOBHm_Chr2g0142381 RchiOBHm_Chr2g0160241 RchiOBHm_Chr5g0080201
rosa_laevigata	RLG00000016326 RLG00000019956
rosa_multiflora	Rmu_sc0001211.1_g000033 Rmu_sc0004296.1_g000002 Rmu_sc0020806.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102670 Rroxscaffold_2G00103250 Rroxscaffold_2G00148940
rosa_rugosa	Rorug02G0027800 Rorug02G0028000 Rorug02G0372400
rosa_samantha	Rh2AG073700 Rh2AG424200 Rh2BG074600 Rh2BG433800 Rh2BG561300 Rh2CG075700 Rh2DG072800 Rh2DG443700 Rh2DG569800 Rh5DG397100
rosa_wichuraiana	Rw0G015000 Rw2G005920 Rw2G045310 Rw5G024190 Rw7G017720 Rw7G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	404
AccB7I	CCANNNNNTGG	1 cut(s)	316
AciI	CCGC	1 cut(s)	183
AclI	AACGTT	1 cut(s)	126
AcsI	RAATTY	1 cut(s)	278
AfiI	CCNNNNNNNGG	2 cut(s)	274, 316
AgsI	TTSAA	2 cut(s)	95, 343
AjnI	CCWGG	4 cut(s)	13, 177, 284, 309
AluBI	AGCT	4 cut(s)	200, 247, 350, 428
AluI	AGCT	4 cut(s)	200, 247, 350, 428
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	2 cut(s)	101, 389
AoxI	GGCC	2 cut(s)	180, 332
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	1 cut(s)	278
Asp700I	GAANNNNTTC	2 cut(s)	68, 278
AspLEI	GCGC	1 cut(s)	371
AspS9I	GGNCC	1 cut(s)	193
AsuHPI	GGTGA	2 cut(s)	73, 112
AvaII	GGWCC	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	2 cut(s)	182, 380
BciT130I	CCWGG	4 cut(s)	15, 179, 286, 311
BcoDI	GTCTC	2 cut(s)	101, 389
BfaI	CTAG	1 cut(s)	360
BfmI	CTRYAG	1 cut(s)	328
BfoI	RGCGCY	1 cut(s)	372
BisI	GCNGC	2 cut(s)	183, 351
BlsI	GCNGC	2 cut(s)	184, 352
Bme1390I	CCNGG	4 cut(s)	15, 179, 286, 311
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	193
BmiI	GGNNCC	1 cut(s)	406
BmrFI	CCNGG	4 cut(s)	15, 179, 286, 311
Bpu10I	CCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	254
BsaI	GGTCTC	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	284
BsaWI	WCCGGW	1 cut(s)	401
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 316
BseBI	CCWGG	4 cut(s)	15, 179, 286, 311
BseDI	CCNNGG	1 cut(s)	284
BseGI	GGATG	2 cut(s)	174, 294
BseLI	CCNNNNNNNGG	2 cut(s)	274, 316
BseMII	CTCAG	2 cut(s)	379, 400
BseXI	GCAGC	1 cut(s)	337
BsgI	GTGCAG	1 cut(s)	336
BshFI	GGCC	2 cut(s)	182, 334
BshNI	GGYRCC	1 cut(s)	404
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	2 cut(s)	335, 402
BslI	CCNNNNNNNGG	2 cut(s)	274, 316
BsmAI	GTCTC	2 cut(s)	101, 389
BsnI	GGCC	2 cut(s)	182, 334
Bso31I	GGTCTC	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	2 cut(s)	24, 33
BspACI	CCGC	1 cut(s)	183
BspANI	GGCC	2 cut(s)	182, 334
BspCNI	CTCAG	2 cut(s)	378, 399
BspLI	GGNNCC	1 cut(s)	406
BspT107I	GGYRCC	1 cut(s)	404
BspTNI	GGTCTC	1 cut(s)	389
BssECI	CCNNGG	1 cut(s)	284
BssMI	GATC	2 cut(s)	24, 33
Bst2UI	CCWGG	4 cut(s)	15, 179, 286, 311
Bst4CI	ACNGT	3 cut(s)	10, 53, 169
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	4 cut(s)	87, 243, 365, 386
BstENI	CCTNNNNNAGG	1 cut(s)	272
BstF5I	GGATG	2 cut(s)	174, 294
BstH2I	RGCGCY	1 cut(s)	372
BstHHI	GCGC	1 cut(s)	371
BstKTI	GATC	2 cut(s)	27, 36
BstMAI	GTCTC	2 cut(s)	101, 389
BstMBI	GATC	2 cut(s)	24, 33
BstMWI	GCNNNNNNNGC	3 cut(s)	238, 356, 375
BstNI	CCWGG	4 cut(s)	15, 179, 286, 311
BstSCI	CCNGG	4 cut(s)	13, 177, 284, 309
BstSFI	CTRYAG	1 cut(s)	328
BstV1I	GCAGC	1 cut(s)	337
BsuRI	GGCC	2 cut(s)	182, 334
BtsCI	GGATG	2 cut(s)	174, 294
Cac8I	GCNNGC	1 cut(s)	210
CfoI	GCGC	1 cut(s)	371
Cfr13I	GGNCC	1 cut(s)	193
CsiI	ACCWGGT	1 cut(s)	309
CviJI	RGCY	8 cut(s)	182, 200, 241, 247, 299, 334, 350, 428
CviKI_1	RGCY	8 cut(s)	182, 200, 241, 247, 299, 334, 350, 428
DdeI	CTNAG	4 cut(s)	87, 243, 365, 386
DpnI	GATC	2 cut(s)	26, 35
DpnII	GATC	2 cut(s)	24, 33
Eco31I	GGTCTC	1 cut(s)	389
Eco47I	GGWCC	1 cut(s)	193
EcoNI	CCTNNNNNAGG	1 cut(s)	272
EcoRI	GAATTC	1 cut(s)	278
EcoRII	CCWGG	4 cut(s)	13, 177, 284, 309
FalI	AAGNNNNNCTT	2 cut(s)	339, 371
Fnu4HI	GCNGC	2 cut(s)	183, 351
FokI	GGATG	2 cut(s)	161, 301
Fsp4HI	GCNGC	2 cut(s)	183, 351
FspBI	CTAG	1 cut(s)	360
GlaI	GCGC	1 cut(s)	370
GluI	GCNGC	2 cut(s)	183, 351
HaeII	RGCGCY	1 cut(s)	372
HaeIII	GGCC	2 cut(s)	182, 334
HapII	CCGG	2 cut(s)	335, 402
HhaI	GCGC	1 cut(s)	371
Hin6I	GCGC	1 cut(s)	369
HinP1I	GCGC	1 cut(s)	369
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	1 cut(s)	363
HpaII	CCGG	2 cut(s)	335, 402
HphI	GGTGA	2 cut(s)	73, 112
Hpy166II	GTNNAC	3 cut(s)	130, 256, 319
Hpy188III	TCNNGA	2 cut(s)	37, 271
Hpy8I	GTNNAC	3 cut(s)	130, 256, 319
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	3 cut(s)	10, 53, 169
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	2 cut(s)	155, 353
HpyF10VI	GCNNNNNNNGC	3 cut(s)	238, 356, 375
HpyF3I	CTNAG	4 cut(s)	87, 243, 365, 386
HpySE526I	ACGT	1 cut(s)	126
HspAI	GCGC	1 cut(s)	369
Kzo9I	GATC	2 cut(s)	24, 33
Lsp1109I	GCAGC	1 cut(s)	337
MabI	ACCWGGT	1 cut(s)	309
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	2 cut(s)	26, 35
MboI	GATC	2 cut(s)	24, 33
MboII	GAAGA	2 cut(s)	52, 355
MfeI	CAATTG	1 cut(s)	20
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	3 cut(s)	20, 95, 278
MlyI	GAGTC	1 cut(s)	357
MnlI	CCTC	3 cut(s)	71, 128, 278
MroXI	GAANNNNTTC	2 cut(s)	68, 278
MseI	TTAA	1 cut(s)	430
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	2 cut(s)	335, 402
MspR9I	CCNGG	4 cut(s)	15, 179, 286, 311
MunI	CAATTG	1 cut(s)	20
MvaI	CCWGG	4 cut(s)	15, 179, 286, 311
MwoI	GCNNNNNNNGC	3 cut(s)	238, 356, 375
NdeII	GATC	2 cut(s)	24, 33
NlaIV	GGNNCC	1 cut(s)	406
NmuCI	GTSAC	1 cut(s)	169
PdmI	GAANNNNTTC	2 cut(s)	68, 278
PflMI	CCANNNNNTGG	1 cut(s)	316
PfoI	TCCNGGA	1 cut(s)	13
PkrI	GCNGC	2 cut(s)	184, 352
PleI	GAGTC	1 cut(s)	357
PpsI	GAGTC	1 cut(s)	357
Psp1406I	AACGTT	1 cut(s)	126
Psp6I	CCWGG	4 cut(s)	13, 177, 284, 309
PspGI	CCWGG	4 cut(s)	13, 177, 284, 309
PspN4I	GGNNCC	1 cut(s)	406
PspPI	GGNCC	1 cut(s)	193
SaqAI	TTAA	1 cut(s)	430
SatI	GCNGC	2 cut(s)	183, 351
Sau3AI	GATC	2 cut(s)	24, 33
Sau96I	GGNCC	1 cut(s)	193
SchI	GAGTC	1 cut(s)	357
ScrFI	CCNGG	4 cut(s)	15, 179, 286, 311
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	9 cut(s)	93, 120, 129, 202, 249, 315, 352, 385, 430
SexAI	ACCWGGT	1 cut(s)	309
SfcI	CTRYAG	1 cut(s)	328
SinI	GGWCC	1 cut(s)	193
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	3 cut(s)	20, 95, 278
SsiI	CCGC	1 cut(s)	183
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	4 cut(s)	13, 177, 284, 309
TaaI	ACNGT	3 cut(s)	10, 53, 169
TaiI	ACGT	1 cut(s)	129
TasI	AATT	3 cut(s)	20, 95, 278
TauI	GCSGC	1 cut(s)	185
Tru1I	TTAA	1 cut(s)	430
Tru9I	TTAA	1 cut(s)	430
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	169
Van91I	CCANNNNNTGG	1 cut(s)	316
VpaK11BI	GGWCC	1 cut(s)	193
XagI	CCTNNNNNAGG	1 cut(s)	272
XapI	RAATTY	1 cut(s)	278
XmnI	GAANNNNTTC	2 cut(s)	68, 278
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.