Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001660

Physical Location & Seq

Genomic Coordinates Reverse (-)

64439205 .. 64440590

Gene Structure 1386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG443700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCGACGGTTCCAGGGCAACTGATATGGGAGATAGTGAAGAAGAACAACTCTTTTCTGGTGAAGGAGTTCGGCAGAAGCCACGCCGGCGTTAGGTTCAGCAAGGAGCCCAACAACCTCTTGAACCTCCACTCCTACAAGCAATCTGGGTTGGCGAACAAGAAAACTGTGGCAATTCAGCCCGGTAAGGACCAATCTGTGCTGCTGGCGACGACTAAGACCAGGAAGCAGAACAAGCCTGCTGCTCTGCTCCACAAGTCTGTGTTGAAGAAGGACTTCCGCCGAATGGCCAATGCCGTCAATGATCAGGTGGCAAAGAACTTCTACCGGGCAGATCTGAAGCATGCAGCCCTTGCAAGGTTGAGTGCTGTTCACAGGAGCCTCAAGGTTGCCAAGTCTGGTGCGAAGAAGAGGAACAGGCAGGCTGTCAGAATCTATGGCAGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28e

Protein Analysis

149

Amino Acids

16.73

Weight (kDa)

11.32

Isoelectric Point (pI)

38.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L28e	PF01778	8 - 127	3.9e-36	Ribosomal L28e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19730 AT2G19730 AT2G19730 AT4G29410 AT4G29410
fragaria_vesca	FvH4_1g06820 FvH4_6g32910
malus_domestica	MD02G1072800.v1.1 MD07G1062600.v1.1 MD09G1196500.v1.1 MD15G1202600.v1.1
prunus_persica	Prupe.3G052900_v2.0.a1 Prupe.7G214600_v2.0.a1 Prupe.7G214600_v2.0.a1
pyrus_communis	pycom09g11360 pycom15g18000 pycom17g18620
rosa_chinensis	RchiOBHm_Chr1g0323731 RchiOBHm_Chr2g0092591 RchiOBHm_Chr2g0142381 RchiOBHm_Chr2g0160241 RchiOBHm_Chr5g0080201
rosa_laevigata	RLG00000016326 RLG00000019956
rosa_multiflora	Rmu_sc0001211.1_g000033 Rmu_sc0004296.1_g000002 Rmu_sc0020806.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102670 Rroxscaffold_2G00103250 Rroxscaffold_2G00148940
rosa_rugosa	Rorug02G0027800 Rorug02G0028000 Rorug02G0372400
rosa_samantha	Rh2AG073700 Rh2AG424200 Rh2BG074600 Rh2BG433800 Rh2BG561300 Rh2CG075700 Rh2DG072800 Rh2DG443700 Rh2DG569800 Rh5DG397100
rosa_wichuraiana	Rw0G015000 Rw2G005920 Rw2G045310 Rw5G024190 Rw7G017720 Rw7G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	280
AcoI	YGGCCR	1 cut(s)	288
AcuI	CTGAAG	1 cut(s)	359
AfiI	CCNNNNNNNGG	3 cut(s)	93, 286, 357
AgsI	TTSAA	2 cut(s)	124, 268
AjnI	CCWGG	2 cut(s)	13, 221
AloI	GAACNNNNNNTCC	2 cut(s)	116, 148
AoxI	GGCC	1 cut(s)	288
ApeKI	GCWGC	3 cut(s)	202, 242, 347
Asp700I	GAANNNNTTC	2 cut(s)	68, 275
AspS9I	GGNCC	1 cut(s)	190
AsuC2I	CCSGG	2 cut(s)	183, 329
AsuHPI	GGTGA	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	190
BalI	TGGCCA	1 cut(s)	290
BanII	GRGCYC	1 cut(s)	111
BbvI	GCAGC	3 cut(s)	189, 229, 359
BceAI	ACGGC	1 cut(s)	281
BciT130I	CCWGG	2 cut(s)	15, 223
BclI	TGATCA	1 cut(s)	304
BcnI	CCSGG	2 cut(s)	183, 329
BglI	GCCNNNNNGGC	1 cut(s)	87
BglII	AGATCT	1 cut(s)	334
BisI	GCNGC	3 cut(s)	203, 243, 348
BlsI	GCNGC	3 cut(s)	204, 244, 349
Bme1390I	CCNGG	4 cut(s)	15, 183, 223, 329
Bme18I	GGWCC	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	3 cut(s)	12, 108, 380
BmrFI	CCNGG	4 cut(s)	15, 183, 223, 329
BpuEI	CTTGAG	1 cut(s)	368
BpuMI	CCSGG	2 cut(s)	183, 329
BsaJI	CCNNGG	1 cut(s)	14
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 286, 357
Bse118I	RCCGGY	1 cut(s)	86
BseBI	CCWGG	2 cut(s)	15, 223
BseDI	CCNNGG	1 cut(s)	14
BseLI	CCNNNNNNNGG	3 cut(s)	93, 286, 357
BseXI	GCAGC	3 cut(s)	189, 229, 359
BshFI	GGCC	1 cut(s)	290
BsiSI	CCGG	3 cut(s)	87, 183, 328
BslI	CCNNNNNNNGG	3 cut(s)	93, 286, 357
BsnI	GGCC	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	304, 334
BspACI	CCGC	1 cut(s)	280
BspANI	GGCC	1 cut(s)	290
BspLI	GGNNCC	3 cut(s)	12, 108, 380
BsrFI	RCCGGY	1 cut(s)	86
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	14
BssMI	GATC	2 cut(s)	304, 334
Bst2UI	CCWGG	2 cut(s)	15, 223
Bst4CI	ACNGT	2 cut(s)	10, 169
Bst6I	CTCTTC	1 cut(s)	404
BstAPI	GCANNNNNTGC	1 cut(s)	353
BstC8I	GCNNGC	5 cut(s)	88, 207, 240, 345, 423
BstDEI	CTNAG	1 cut(s)	216
BstKTI	GATC	2 cut(s)	307, 337
BstMBI	GATC	2 cut(s)	304, 334
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 235, 353
BstNI	CCWGG	2 cut(s)	15, 223
BstNSI	RCATGY	1 cut(s)	347
BstSCI	CCNGG	4 cut(s)	13, 181, 221, 327
BstV1I	GCAGC	3 cut(s)	189, 229, 359
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BsuRI	GGCC	1 cut(s)	290
Cac8I	GCNNGC	5 cut(s)	88, 207, 240, 345, 423
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	190
CviAII	CATG	1 cut(s)	344
CviJI	RGCY	8 cut(s)	81, 109, 181, 238, 290, 350, 381, 425
CviKI_1	RGCY	8 cut(s)	81, 109, 181, 238, 290, 350, 381, 425
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	2 cut(s)	306, 336
DpnII	GATC	2 cut(s)	304, 334
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
EciI	GGCGGA	1 cut(s)	269
Eco24I	GRGCYC	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	359
EcoRII	CCWGG	2 cut(s)	13, 221
EcoT38I	GRGCYC	1 cut(s)	111
FaeI	CATG	1 cut(s)	347
FaiI	YATR	3 cut(s)	28, 345, 438
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FatI	CATG	1 cut(s)	343
FbaI	TGATCA	1 cut(s)	304
Fnu4HI	GCNGC	3 cut(s)	203, 243, 348
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	3 cut(s)	203, 243, 348
GluI	GCNGC	3 cut(s)	203, 243, 348
HaeIII	GGCC	1 cut(s)	290
HapII	CCGG	3 cut(s)	87, 183, 328
Hin1II	CATG	1 cut(s)	347
HinfI	GANTC	1 cut(s)	432
HpaII	CCGG	3 cut(s)	87, 183, 328
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	2 cut(s)	339, 431
Hpy188III	TCNNGA	1 cut(s)	121
Hpy8I	GTNNAC	1 cut(s)	373
Hpy99I	CGWCG	2 cut(s)	10, 214
HpyAV	CCTTC	2 cut(s)	58, 265
HpyCH4III	ACNGT	2 cut(s)	10, 169
HpyCH4V	TGCA	2 cut(s)	347, 356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 235, 353
HpyF3I	CTNAG	1 cut(s)	216
Hsp92II	CATG	1 cut(s)	347
KroI	GCCGGC	1 cut(s)	86
KroNI	GCCGGC	1 cut(s)	88
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	2 cut(s)	304, 334
LmnI	GCTCC	3 cut(s)	106, 255, 378
Lsp1109I	GCAGC	3 cut(s)	189, 229, 359
MalI	GATC	2 cut(s)	306, 336
MboI	GATC	2 cut(s)	304, 334
MboII	GAAGA	5 cut(s)	52, 55, 280, 418, 421
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	111
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	1 cut(s)	174
MluNI	TGGCCA	1 cut(s)	290
MnlI	CCTC	4 cut(s)	128, 137, 392, 405
Mox20I	TGGCCA	1 cut(s)	290
MreI	CGCCGGCG	1 cut(s)	86
MroNI	GCCGGC	1 cut(s)	86
MroXI	GAANNNNTTC	2 cut(s)	68, 275
MscI	TGGCCA	1 cut(s)	290
Msp20I	TGGCCA	1 cut(s)	290
MspI	CCGG	3 cut(s)	87, 183, 328
MspR9I	CCNGG	4 cut(s)	15, 183, 223, 329
MvaI	CCWGG	2 cut(s)	15, 223
MwoI	GCNNNNNNNGC	3 cut(s)	87, 235, 353
NaeI	GCCGGC	1 cut(s)	88
NciI	CCSGG	2 cut(s)	183, 329
NdeII	GATC	2 cut(s)	304, 334
NgoMIV	GCCGGC	1 cut(s)	86
NlaIII	CATG	1 cut(s)	347
NlaIV	GGNNCC	3 cut(s)	12, 108, 380
NspI	RCATGY	1 cut(s)	347
PaeI	GCATGC	1 cut(s)	347
PdiI	GCCGGC	1 cut(s)	88
PdmI	GAANNNNTTC	2 cut(s)	68, 275
PfeI	GAWTC	1 cut(s)	432
PkrI	GCNGC	3 cut(s)	204, 244, 349
Psp6I	CCWGG	2 cut(s)	13, 221
PspGI	CCWGG	2 cut(s)	13, 221
PspN4I	GGNNCC	3 cut(s)	12, 108, 380
PspPI	GGNCC	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	334
SatI	GCNGC	3 cut(s)	203, 243, 348
Sau3AI	GATC	2 cut(s)	304, 334
Sau96I	GGNCC	1 cut(s)	190
ScrFI	CCNGG	4 cut(s)	15, 183, 223, 329
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	6 cut(s)	98, 120, 129, 312, 362, 390
SgrAI	CRCCGGYG	1 cut(s)	86
SinI	GGWCC	1 cut(s)	190
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
SphI	GCATGC	1 cut(s)	347
Sse9I	AATT	1 cut(s)	174
SsiI	CCGC	1 cut(s)	280
StyD4I	CCNGG	4 cut(s)	13, 181, 221, 327
TaaI	ACNGT	2 cut(s)	10, 169
TasI	AATT	1 cut(s)	174
TfiI	GAWTC	1 cut(s)	432
TseI	GCWGC	3 cut(s)	202, 242, 347
VpaK11BI	GGWCC	1 cut(s)	190
XceI	RCATGY	1 cut(s)	347
XmnI	GAANNNNTTC	2 cut(s)	68, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.