Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001660

Physical Location & Seq

Genomic Coordinates Reverse (-)

5689599 .. 5691623

Gene Structure 2025 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016326

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTCTGCTTTGTTCGCGACCTATATAACTAAGACGACCCAACTCGTAAACCCGGAGCCTCCACTGCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGCGAAACCCTCTCTGCAGAATTGGTACAGCTTTTGCCAGGTTCCAATGGCCACCGTTCCAGGACAGCTGATCTGGGAGATCGTCAAGAAGAACAACTCCTTCTTGGTCAAGCAGTTCGGCCGGAGCCACGCGGGCGTCCGCTTCAGCAAGGAGCCTAACAACCTCTGCAACCTCCACTCCTACAAGCACTCCGGTTTGGCGAACAAGAAGACTGTGAGTATTCAGCCCGGAGGCAAAGACCAATCGGTGGTGCTCGCCACCACTAAGACCAGGAAGCAGAACAAGCCGGCCAGTCTGGTTCACAAGTCTGTCATGAGGAAGGAGTTTCCTCGCATGGCCAAGGCTGTTACCAATCAGGTGGTTGATAACTTCTACAGACCAGATTTGAAGAAGGCAGCCCTTGCTAGGCTCAGTGTGGTTTACAGGAGTCTCAAGGTGTCAAAATCTGGTGCCAAGAAGAGGAATAGGCAGGCTGTTAGAATGTACGGAAGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28e

Protein Analysis

200

Amino Acids

22.28

Weight (kDa)

10.62

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L28e	PF01778	57 - 177	1.7e-35	Ribosomal L28e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19730 AT2G19730 AT2G19730 AT4G29410 AT4G29410
fragaria_vesca	FvH4_1g06820 FvH4_6g32910
malus_domestica	MD02G1072800.v1.1 MD07G1062600.v1.1 MD09G1196500.v1.1 MD15G1202600.v1.1
prunus_persica	Prupe.3G052900_v2.0.a1 Prupe.7G214600_v2.0.a1 Prupe.7G214600_v2.0.a1
pyrus_communis	pycom09g11360 pycom15g18000 pycom17g18620
rosa_chinensis	RchiOBHm_Chr1g0323731 RchiOBHm_Chr2g0092591 RchiOBHm_Chr2g0142381 RchiOBHm_Chr2g0160241 RchiOBHm_Chr5g0080201
rosa_laevigata	RLG00000016326 RLG00000019956
rosa_multiflora	Rmu_sc0001211.1_g000033 Rmu_sc0004296.1_g000002 Rmu_sc0020806.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102670 Rroxscaffold_2G00103250 Rroxscaffold_2G00148940
rosa_rugosa	Rorug02G0027800 Rorug02G0028000 Rorug02G0372400
rosa_samantha	Rh2AG073700 Rh2AG424200 Rh2BG074600 Rh2BG433800 Rh2BG561300 Rh2CG075700 Rh2DG072800 Rh2DG443700 Rh2DG569800 Rh5DG397100
rosa_wichuraiana	Rw0G015000 Rw2G005920 Rw2G045310 Rw5G024190 Rw7G017720 Rw7G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	551
AccB7I	CCANNNNNTGG	1 cut(s)	349
AccII	CGCG	2 cut(s)	17, 233
AciI	CCGC	2 cut(s)	233, 241
AcoI	YGGCCR	4 cut(s)	150, 220, 390, 438
AcuI	CTGAAG	1 cut(s)	229
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	2 cut(s)	128, 587
AfiI	CCNNNNNNNGG	3 cut(s)	349, 507, 561
AgsI	TTSAA	1 cut(s)	490
AjnI	CCWGG	3 cut(s)	138, 160, 371
AluBI	AGCT	2 cut(s)	132, 169
AluI	AGCT	2 cut(s)	132, 169
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	1 cut(s)	536
AoxI	GGCC	4 cut(s)	150, 220, 390, 438
ApeKI	GCWGC	1 cut(s)	497
AsuC2I	CCSGG	2 cut(s)	53, 330
BalI	TGGCCA	2 cut(s)	152, 440
BanI	GGYRCC	1 cut(s)	551
BbsI	GAAGAC	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	1 cut(s)	509
BciT130I	CCWGG	3 cut(s)	140, 162, 373
BcnI	CCSGG	2 cut(s)	53, 330
BcoDI	GTCTC	1 cut(s)	536
BfaI	CTAG	1 cut(s)	507
BfmI	CTRYAG	2 cut(s)	116, 475
BglI	GCCNNNNNGGC	1 cut(s)	234
BisI	GCNGC	1 cut(s)	498
BlsI	GCNGC	1 cut(s)	499
Bme1390I	CCNGG	5 cut(s)	53, 140, 162, 330, 373
BmiI	GGNNCC	5 cut(s)	57, 144, 227, 255, 553
BmrFI	CCNGG	5 cut(s)	53, 140, 162, 330, 373
BpiI	GAAGAC	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	518
BpuMI	CCSGG	2 cut(s)	53, 330
BsaHI	GRCGYC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	441
BsaWI	WCCGGW	1 cut(s)	293
BsaXI	ACNNNNNCTCC	4 cut(s)	263, 275, 293, 305
Bsc4I	CCNNNNNNNGG	3 cut(s)	349, 507, 561
Bse118I	RCCGGY	1 cut(s)	388
Bse1I	ACTGG	1 cut(s)	393
BseBI	CCWGG	3 cut(s)	140, 162, 373
BseDI	CCNNGG	1 cut(s)	441
BseLI	CCNNNNNNNGG	3 cut(s)	349, 507, 561
BseMII	CTCAG	1 cut(s)	526
BseNI	ACTGG	1 cut(s)	393
BseX3I	CGGCCG	1 cut(s)	220
BseXI	GCAGC	1 cut(s)	509
Bsh1236I	CGCG	2 cut(s)	17, 233
Bsh1285I	CGRYCG	1 cut(s)	223
BshFI	GGCC	4 cut(s)	152, 222, 392, 440
BshNI	GGYRCC	1 cut(s)	551
BsiEI	CGRYCG	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	357
BsiSI	CCGG	5 cut(s)	53, 223, 294, 330, 389
BslI	CCNNNNNNNGG	3 cut(s)	349, 507, 561
BsmAI	GTCTC	1 cut(s)	536
BsnI	GGCC	4 cut(s)	152, 222, 392, 440
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	2 cut(s)	171, 180
Bsp68I	TCGCGA	1 cut(s)	17
BspACI	CCGC	2 cut(s)	233, 241
BspANI	GGCC	4 cut(s)	152, 222, 392, 440
BspCNI	CTCAG	1 cut(s)	525
BspFNI	CGCG	2 cut(s)	17, 233
BspHI	TCATGA	1 cut(s)	414
BspLI	GGNNCC	5 cut(s)	57, 144, 227, 255, 553
BspMAI	CTGCAG	1 cut(s)	120
BspT107I	GGYRCC	1 cut(s)	551
BsrFI	RCCGGY	1 cut(s)	388
BsrI	ACTGG	1 cut(s)	393
BssAI	RCCGGY	1 cut(s)	388
BssECI	CCNNGG	1 cut(s)	441
BssMI	GATC	2 cut(s)	171, 180
BssNI	GRCGYC	1 cut(s)	237
BssT1I	CCWWGG	1 cut(s)	441
Bst2UI	CCWGG	3 cut(s)	140, 162, 373
Bst4CI	ACNGT	2 cut(s)	157, 316
Bst6I	CTCTTC	1 cut(s)	554
BstACI	GRCGYC	1 cut(s)	237
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstC8I	GCNNGC	4 cut(s)	235, 357, 390, 573
BstDEI	CTNAG	3 cut(s)	30, 366, 512
BstFNI	CGCG	2 cut(s)	17, 233
BstKTI	GATC	2 cut(s)	174, 183
BstMAI	GTCTC	1 cut(s)	536
BstMBI	GATC	2 cut(s)	171, 180
BstMCI	CGRYCG	1 cut(s)	223
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 64, 234, 385, 503
BstNI	CCWGG	3 cut(s)	140, 162, 373
BstSCI	CCNGG	5 cut(s)	51, 138, 160, 328, 371
BstSFI	CTRYAG	2 cut(s)	116, 475
BstUI	CGCG	2 cut(s)	17, 233
BstV1I	GCAGC	1 cut(s)	509
BstV2I	GAAGAC	1 cut(s)	317
BstXI	CCANNNNNNTGG	1 cut(s)	460
BstZI	CGGCCG	1 cut(s)	220
BsuRI	GGCC	4 cut(s)	152, 222, 392, 440
BtsI	GCAGTG	1 cut(s)	62
BtsIMutI	CAGTG	2 cut(s)	62, 520
BtuMI	TCGCGA	1 cut(s)	17
Cac8I	GCNNGC	4 cut(s)	235, 357, 390, 573
CciI	TCATGA	1 cut(s)	414
Cfr10I	RCCGGY	1 cut(s)	388
CseI	GACGC	1 cut(s)	226
Csp6I	GTAC	2 cut(s)	127, 586
CviAII	CATG	2 cut(s)	415, 436
CviQI	GTAC	2 cut(s)	127, 586
DdeI	CTNAG	3 cut(s)	30, 366, 512
DpnI	GATC	2 cut(s)	173, 182
DpnII	GATC	2 cut(s)	171, 180
EaeI	YGGCCR	4 cut(s)	150, 220, 390, 438
EagI	CGGCCG	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	554
EarI	CTCTTC	1 cut(s)	554
EclXI	CGGCCG	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	441
Eco52I	CGGCCG	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	229
EcoRII	CCWGG	3 cut(s)	138, 160, 371
EcoT14I	CCWWGG	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	441
FaeI	CATG	2 cut(s)	418, 439
FaiI	YATR	4 cut(s)	24, 26, 416, 437
FatI	CATG	2 cut(s)	414, 435
FauI	CCCGC	1 cut(s)	226
Fnu4HI	GCNGC	1 cut(s)	498
Fsp4HI	GCNGC	1 cut(s)	498
FspBI	CTAG	1 cut(s)	507
GluI	GCNGC	1 cut(s)	498
HaeIII	GGCC	4 cut(s)	152, 222, 392, 440
HapII	CCGG	5 cut(s)	53, 223, 294, 330, 389
HgaI	GACGC	1 cut(s)	226
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	2 cut(s)	418, 439
HinfI	GANTC	1 cut(s)	529
HpaII	CCGG	5 cut(s)	53, 223, 294, 330, 389
Hpy166II	GTNNAC	3 cut(s)	49, 403, 523
Hpy188III	TCNNGA	3 cut(s)	16, 187, 415
Hpy8I	GTNNAC	3 cut(s)	49, 403, 523
HpyAV	CCTTC	4 cut(s)	211, 415, 487, 585
HpyCH4III	ACNGT	2 cut(s)	157, 316
HpyCH4V	TGCA	2 cut(s)	118, 270
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 64, 234, 385, 503
HpyF3I	CTNAG	3 cut(s)	30, 366, 512
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	2 cut(s)	418, 439
KroI	GCCGGC	1 cut(s)	388
KroNI	GCCGGC	1 cut(s)	390
Kzo9I	GATC	2 cut(s)	171, 180
LmnI	GCTCC	3 cut(s)	55, 225, 253
Lsp1109I	GCAGC	1 cut(s)	509
MaeI	CTAG	1 cut(s)	507
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	2 cut(s)	173, 182
MboI	GATC	2 cut(s)	171, 180
MboII	GAAGA	4 cut(s)	202, 322, 502, 571
MhlI	GDGCHC	1 cut(s)	357
MlsI	TGGCCA	2 cut(s)	152, 440
MluCI	AATT	1 cut(s)	121
MluNI	TGGCCA	2 cut(s)	152, 440
MlyI	GAGTC	1 cut(s)	538
MnlI	CCTC	9 cut(s)	69, 79, 121, 275, 284, 326, 411, 441, 555
Mox20I	TGGCCA	2 cut(s)	152, 440
MroNI	GCCGGC	1 cut(s)	388
MscI	TGGCCA	2 cut(s)	152, 440
Msp20I	TGGCCA	2 cut(s)	152, 440
MspA1I	CMGCKG	1 cut(s)	169
MspI	CCGG	5 cut(s)	53, 223, 294, 330, 389
MspR9I	CCNGG	5 cut(s)	53, 140, 162, 330, 373
MvaI	CCWGG	3 cut(s)	140, 162, 373
MvnI	CGCG	2 cut(s)	17, 233
MwoI	GCNNNNNNNGC	5 cut(s)	14, 64, 234, 385, 503
NaeI	GCCGGC	1 cut(s)	390
NciI	CCSGG	2 cut(s)	53, 330
NdeII	GATC	2 cut(s)	171, 180
NgoMIV	GCCGGC	1 cut(s)	388
NlaIII	CATG	2 cut(s)	418, 439
NlaIV	GGNNCC	5 cut(s)	57, 144, 227, 255, 553
NruI	TCGCGA	1 cut(s)	17
PagI	TCATGA	1 cut(s)	414
PdiI	GCCGGC	1 cut(s)	390
PflMI	CCANNNNNTGG	1 cut(s)	349
PfoI	TCCNGGA	1 cut(s)	160
PkrI	GCNGC	1 cut(s)	499
PleI	GAGTC	1 cut(s)	537
PpsI	GAGTC	1 cut(s)	537
Psp6I	CCWGG	3 cut(s)	138, 160, 371
PspGI	CCWGG	3 cut(s)	138, 160, 371
PspN4I	GGNNCC	5 cut(s)	57, 144, 227, 255, 553
PstI	CTGCAG	1 cut(s)	120
PvuII	CAGCTG	1 cut(s)	169
RruI	TCGCGA	1 cut(s)	17
RsaI	GTAC	2 cut(s)	128, 587
RsaNI	GTAC	2 cut(s)	127, 586
SatI	GCNGC	1 cut(s)	498
Sau3AI	GATC	2 cut(s)	171, 180
SchI	GAGTC	1 cut(s)	538
ScrFI	CCNGG	5 cut(s)	53, 140, 162, 330, 373
SduI	GDGCHC	1 cut(s)	357
SetI	ASST	8 cut(s)	23, 134, 144, 171, 267, 276, 462, 540
SfcI	CTRYAG	2 cut(s)	116, 475
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
Sse9I	AATT	1 cut(s)	121
SsiI	CCGC	2 cut(s)	233, 241
SspMI	CTAG	1 cut(s)	507
StyD4I	CCNGG	5 cut(s)	51, 138, 160, 328, 371
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	2 cut(s)	157, 316
TasI	AATT	1 cut(s)	121
TscAI	CASTG	2 cut(s)	69, 520
TseI	GCWGC	1 cut(s)	497
TspRI	CASTG	2 cut(s)	69, 520
Van91I	CCANNNNNTGG	1 cut(s)	349
XspI	CTAG	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.