Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001660

Physical Location & Seq

Genomic Coordinates Reverse (-)

25968563 .. 25970528

Gene Structure 1966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g32910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCGACGGTTCCAGGGCAACTGATATGGGAGATAGTGAAGAAGAACAACTCTTTTCTGGTGAAGGAGTTCGGCCGAAGCCACGCCGGCGTTAGGTTCAGCAAGGAGCCCAACAACCTCTTGAACCTCCACTCCTACAAGCAATCTGGGTTGGCGAACAAGAAGACCGTGACAATTCAGCCCGGGAAGGACCAGTCTGTGCTGCTGGCGACGACTAAGACCAGGAAGCAGAACAAGCCTGCTGCTCTGCTCCACAAGTCTGTGTTGAAGAAGGATTTCCGCCGCATGGCCAATGCCGTCAACAACCAGGTGGTAAAGAACTTCTACCGTGCAGATCTGAAGCATGCTGCCCTTGCAAGGTTGAGTGTTGTTCACAGGAGCCTCAAGGTTGCCAAGTCTGGTGCTAAGAAGAGAAACAGGCAGGCTGTCAGAATCTATGGCAGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28e

Protein Analysis

150

Amino Acids

16.81

Weight (kDa)

11.48

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L28e	PF01778	8 - 127	6.1e-36	Ribosomal L28e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19730 AT2G19730 AT2G19730 AT4G29410 AT4G29410
fragaria_vesca	FvH4_1g06820 FvH4_6g32910
malus_domestica	MD02G1072800.v1.1 MD07G1062600.v1.1 MD09G1196500.v1.1 MD15G1202600.v1.1
prunus_persica	Prupe.3G052900_v2.0.a1 Prupe.7G214600_v2.0.a1 Prupe.7G214600_v2.0.a1
pyrus_communis	pycom09g11360 pycom15g18000 pycom17g18620
rosa_chinensis	RchiOBHm_Chr1g0323731 RchiOBHm_Chr2g0092591 RchiOBHm_Chr2g0142381 RchiOBHm_Chr2g0160241 RchiOBHm_Chr5g0080201
rosa_laevigata	RLG00000016326 RLG00000019956
rosa_multiflora	Rmu_sc0001211.1_g000033 Rmu_sc0004296.1_g000002 Rmu_sc0020806.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102670 Rroxscaffold_2G00103250 Rroxscaffold_2G00148940
rosa_rugosa	Rorug02G0027800 Rorug02G0028000 Rorug02G0372400
rosa_samantha	Rh2AG073700 Rh2AG424200 Rh2BG074600 Rh2BG433800 Rh2BG561300 Rh2CG075700 Rh2DG072800 Rh2DG443700 Rh2DG569800 Rh5DG397100
rosa_wichuraiana	Rw0G015000 Rw2G005920 Rw2G045310 Rw5G024190 Rw7G017720 Rw7G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	280, 283
AcoI	YGGCCR	2 cut(s)	73, 288
AcuI	CTGAAG	1 cut(s)	359
AfiI	CCNNNNNNNGG	3 cut(s)	93, 286, 357
AgsI	TTSAA	2 cut(s)	124, 268
AjnI	CCWGG	3 cut(s)	13, 221, 306
AloI	GAACNNNNNNTCC	2 cut(s)	116, 148
Ama87I	CYCGRG	1 cut(s)	182
AoxI	GGCC	2 cut(s)	73, 288
ApeKI	GCWGC	3 cut(s)	202, 242, 347
Asp700I	GAANNNNTTC	2 cut(s)	68, 275
AspS9I	GGNCC	1 cut(s)	190
AsuC2I	CCSGG	2 cut(s)	183, 184
AsuHPI	GGTGA	1 cut(s)	73
AvaI	CYCGRG	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	190
BalI	TGGCCA	1 cut(s)	290
BanII	GRGCYC	1 cut(s)	111
BbsI	GAAGAC	1 cut(s)	170
BbvI	GCAGC	3 cut(s)	189, 229, 334
BceAI	ACGGC	1 cut(s)	281
BciT130I	CCWGG	3 cut(s)	15, 223, 308
BcnI	CCSGG	2 cut(s)	183, 184
BglI	GCCNNNNNGGC	1 cut(s)	87
BglII	AGATCT	1 cut(s)	334
BisI	GCNGC	4 cut(s)	203, 243, 283, 348
BlsI	GCNGC	4 cut(s)	204, 244, 284, 349
Bme1390I	CCNGG	5 cut(s)	15, 183, 184, 223, 308
Bme18I	GGWCC	1 cut(s)	190
BmeT110I	CYCGRG	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	3 cut(s)	12, 108, 380
BmrFI	CCNGG	5 cut(s)	15, 183, 184, 223, 308
BpiI	GAAGAC	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	368
BpuMI	CCSGG	2 cut(s)	183, 184
BsaJI	CCNNGG	2 cut(s)	14, 182
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 286, 357
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	193
BseBI	CCWGG	3 cut(s)	15, 223, 308
BseDI	CCNNGG	2 cut(s)	14, 182
BseLI	CCNNNNNNNGG	3 cut(s)	93, 286, 357
BseNI	ACTGG	1 cut(s)	193
BseX3I	CGGCCG	1 cut(s)	73
BseXI	GCAGC	3 cut(s)	189, 229, 334
BsgI	GTGCAG	1 cut(s)	351
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	2 cut(s)	75, 290
BsiEI	CGRYCG	1 cut(s)	76
BsiHKCI	CYCGRG	1 cut(s)	182
BsiSI	CCGG	2 cut(s)	87, 183
BslI	CCNNNNNNNGG	3 cut(s)	93, 286, 357
BsnI	GGCC	2 cut(s)	75, 290
BsoBI	CYCGRG	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	334
BspACI	CCGC	2 cut(s)	280, 283
BspANI	GGCC	2 cut(s)	75, 290
BspLI	GGNNCC	3 cut(s)	12, 108, 380
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	193
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	2 cut(s)	14, 182
BssMI	GATC	1 cut(s)	334
Bst2UI	CCWGG	3 cut(s)	15, 223, 308
Bst4CI	ACNGT	3 cut(s)	10, 169, 329
Bst6I	CTCTTC	1 cut(s)	404
BstC8I	GCNNGC	5 cut(s)	88, 207, 240, 345, 423
BstDEI	CTNAG	2 cut(s)	216, 405
BstKTI	GATC	1 cut(s)	337
BstMBI	GATC	1 cut(s)	334
BstMCI	CGRYCG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 235, 353
BstNI	CCWGG	3 cut(s)	15, 223, 308
BstNSI	RCATGY	1 cut(s)	347
BstSCI	CCNGG	5 cut(s)	13, 181, 182, 221, 306
BstV1I	GCAGC	3 cut(s)	189, 229, 334
BstV2I	GAAGAC	1 cut(s)	170
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BstZI	CGGCCG	1 cut(s)	73
BsuRI	GGCC	2 cut(s)	75, 290
Cac8I	GCNNGC	5 cut(s)	88, 207, 240, 345, 423
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	190
Cfr9I	CCCGGG	1 cut(s)	182
CsiI	ACCWGGT	1 cut(s)	306
CviAII	CATG	2 cut(s)	286, 344
CviJI	RGCY	8 cut(s)	75, 81, 109, 181, 238, 290, 381, 425
CviKI_1	RGCY	8 cut(s)	75, 81, 109, 181, 238, 290, 381, 425
DdeI	CTNAG	2 cut(s)	216, 405
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
EaeI	YGGCCR	2 cut(s)	73, 288
EagI	CGGCCG	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
EciI	GGCGGA	1 cut(s)	269
EclXI	CGGCCG	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	190
Eco52I	CGGCCG	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	359
Eco88I	CYCGRG	1 cut(s)	182
EcoRII	CCWGG	3 cut(s)	13, 221, 306
EcoT38I	GRGCYC	1 cut(s)	111
FaeI	CATG	2 cut(s)	289, 347
FaiI	YATR	4 cut(s)	28, 287, 345, 438
FatI	CATG	2 cut(s)	285, 343
Fnu4HI	GCNGC	4 cut(s)	203, 243, 283, 348
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	4 cut(s)	203, 243, 283, 348
GluI	GCNGC	4 cut(s)	203, 243, 283, 348
HaeIII	GGCC	2 cut(s)	75, 290
HapII	CCGG	2 cut(s)	87, 183
Hin1II	CATG	2 cut(s)	289, 347
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	1 cut(s)	432
HpaII	CCGG	2 cut(s)	87, 183
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	2 cut(s)	301, 373
Hpy188I	TCNGA	2 cut(s)	339, 431
Hpy188III	TCNNGA	1 cut(s)	121
Hpy8I	GTNNAC	2 cut(s)	301, 373
Hpy99I	CGWCG	2 cut(s)	10, 214
HpyAV	CCTTC	3 cut(s)	58, 181, 265
HpyCH4III	ACNGT	3 cut(s)	10, 169, 329
HpyCH4V	TGCA	2 cut(s)	332, 356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 235, 353
HpyF3I	CTNAG	2 cut(s)	216, 405
Hsp92II	CATG	2 cut(s)	289, 347
KroI	GCCGGC	1 cut(s)	86
KroNI	GCCGGC	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	334
LmnI	GCTCC	3 cut(s)	106, 255, 378
Lsp1109I	GCAGC	3 cut(s)	189, 229, 334
MabI	ACCWGGT	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MboII	GAAGA	5 cut(s)	52, 55, 175, 280, 421
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	111
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	1 cut(s)	174
MluNI	TGGCCA	1 cut(s)	290
MnlI	CCTC	3 cut(s)	128, 137, 392
Mox20I	TGGCCA	1 cut(s)	290
MreI	CGCCGGCG	1 cut(s)	86
MroNI	GCCGGC	1 cut(s)	86
MroXI	GAANNNNTTC	2 cut(s)	68, 275
MscI	TGGCCA	1 cut(s)	290
Msp20I	TGGCCA	1 cut(s)	290
MspI	CCGG	2 cut(s)	87, 183
MspR9I	CCNGG	5 cut(s)	15, 183, 184, 223, 308
MvaI	CCWGG	3 cut(s)	15, 223, 308
MwoI	GCNNNNNNNGC	3 cut(s)	87, 235, 353
NaeI	GCCGGC	1 cut(s)	88
NciI	CCSGG	2 cut(s)	183, 184
NdeII	GATC	1 cut(s)	334
NgoMIV	GCCGGC	1 cut(s)	86
NlaIII	CATG	2 cut(s)	289, 347
NlaIV	GGNNCC	3 cut(s)	12, 108, 380
NmuCI	GTSAC	1 cut(s)	169
NspI	RCATGY	1 cut(s)	347
PaeI	GCATGC	1 cut(s)	347
PdiI	GCCGGC	1 cut(s)	88
PdmI	GAANNNNTTC	2 cut(s)	68, 275
PfeI	GAWTC	1 cut(s)	432
PkrI	GCNGC	4 cut(s)	204, 244, 284, 349
Psp6I	CCWGG	3 cut(s)	13, 221, 306
PspGI	CCWGG	3 cut(s)	13, 221, 306
PspN4I	GGNNCC	3 cut(s)	12, 108, 380
PspPI	GGNCC	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	334
SatI	GCNGC	4 cut(s)	203, 243, 283, 348
Sau3AI	GATC	1 cut(s)	334
Sau96I	GGNCC	1 cut(s)	190
ScrFI	CCNGG	5 cut(s)	15, 183, 184, 223, 308
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	6 cut(s)	98, 120, 129, 312, 362, 390
SexAI	ACCWGGT	1 cut(s)	306
SgrAI	CRCCGGYG	1 cut(s)	86
SinI	GGWCC	1 cut(s)	190
SmaI	CCCGGG	1 cut(s)	184
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
SphI	GCATGC	1 cut(s)	347
Sse9I	AATT	1 cut(s)	174
SsiI	CCGC	2 cut(s)	280, 283
StyD4I	CCNGG	5 cut(s)	13, 181, 182, 221, 306
TaaI	ACNGT	3 cut(s)	10, 169, 329
TasI	AATT	1 cut(s)	174
TauI	GCSGC	1 cut(s)	285
TfiI	GAWTC	1 cut(s)	432
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	3 cut(s)	202, 242, 347
Tsp45I	GTSAC	1 cut(s)	169
TspMI	CCCGGG	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	190
XceI	RCATGY	1 cut(s)	347
XmaI	CCCGGG	1 cut(s)	182
XmnI	GAANNNNTTC	2 cut(s)	68, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.