Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001660

Physical Location & Seq

Genomic Coordinates Forward (+)

24932693 .. 24934255

Gene Structure 1563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00102670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCGACGGTTCCAGGGCAACTGATATGGGAGATAGTGAAGAAGAACAACTCTTTTCTGGTGAAGGAGTTCGGCAGAAGCCACGCCGGCGTTAGGTTCAGCAAGGAGCCCAACAATCTCTTGAACCTCCACTCCTACAAGCACTCTGGTAAAACCCTAAATTCCACATTTTCAATTTCATTTTCGGTTTGTTTAGCTTGGAAGTTTTGGTCTTTAATTGCGGAATTGGTTCATCGATTAGGGTTGGCGAACAAGAAAACTGTGACAATTCAGCCCGGTAAGGACCAATCTGTGCTGCTGGCGACGACTAAGACCAGGAAGCAGAACAAGCCTGCTGCTCTGCTCCACAAGTCTGTTTTGAAGAAGGACTTCCGCCGGATGGCCAATGCCGTCAATAATCAGGTGGCAAAGAACTTCTACCGGGCAGATCTGAAGCATGCAGCCCTTGCAAGGTTGAGTGCTGTTCACAGGAGCCTCAAGGTTGCCAAGTCTGGTGCGAAGAAGAGGAACAGGCAGGCTGTCAGAATCTATGGCAGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28e

Protein Analysis

180

Amino Acids

20.3

Weight (kDa)

11.31

Isoelectric Point (pI)

30.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L28e	PF01778	8 - 59	7.2e-13	Ribosomal L28e protein family
Ribosomal_L28e	PF01778	81 - 158	2.4e-17	Ribosomal L28e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19730 AT2G19730 AT2G19730 AT4G29410 AT4G29410
fragaria_vesca	FvH4_1g06820 FvH4_6g32910
malus_domestica	MD02G1072800.v1.1 MD07G1062600.v1.1 MD09G1196500.v1.1 MD15G1202600.v1.1
prunus_persica	Prupe.3G052900_v2.0.a1 Prupe.7G214600_v2.0.a1 Prupe.7G214600_v2.0.a1
pyrus_communis	pycom09g11360 pycom15g18000 pycom17g18620
rosa_chinensis	RchiOBHm_Chr1g0323731 RchiOBHm_Chr2g0092591 RchiOBHm_Chr2g0142381 RchiOBHm_Chr2g0160241 RchiOBHm_Chr5g0080201
rosa_laevigata	RLG00000016326 RLG00000019956
rosa_multiflora	Rmu_sc0001211.1_g000033 Rmu_sc0004296.1_g000002 Rmu_sc0020806.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102670 Rroxscaffold_2G00103250 Rroxscaffold_2G00148940
rosa_rugosa	Rorug02G0027800 Rorug02G0028000 Rorug02G0372400
rosa_samantha	Rh2AG073700 Rh2AG424200 Rh2BG074600 Rh2BG433800 Rh2BG561300 Rh2CG075700 Rh2DG072800 Rh2DG443700 Rh2DG569800 Rh5DG397100
rosa_wichuraiana	Rw0G015000 Rw2G005920 Rw2G045310 Rw5G024190 Rw7G017720 Rw7G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	221, 373
AcoI	YGGCCR	1 cut(s)	381
AcsI	RAATTY	1 cut(s)	160
AcuI	CTGAAG	1 cut(s)	452
AfiI	CCNNNNNNNGG	3 cut(s)	93, 379, 450
AgsI	TTSAA	3 cut(s)	124, 174, 361
AjnI	CCWGG	2 cut(s)	13, 314
AloI	GAACNNNNNNTCC	2 cut(s)	116, 148
AluBI	AGCT	1 cut(s)	197
AluI	AGCT	1 cut(s)	197
AoxI	GGCC	1 cut(s)	381
ApeKI	GCWGC	3 cut(s)	295, 335, 440
ApoI	RAATTY	1 cut(s)	160
Asp700I	GAANNNNTTC	3 cut(s)	68, 228, 368
AspS9I	GGNCC	1 cut(s)	283
AsuC2I	CCSGG	2 cut(s)	276, 422
AsuHPI	GGTGA	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	283
BalI	TGGCCA	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	111
BbvI	GCAGC	3 cut(s)	282, 322, 452
BccI	CCATC	1 cut(s)	373
BceAI	ACGGC	1 cut(s)	374
BciT130I	CCWGG	2 cut(s)	15, 316
BcnI	CCSGG	2 cut(s)	276, 422
BglI	GCCNNNNNGGC	1 cut(s)	87
BglII	AGATCT	1 cut(s)	427
BisI	GCNGC	3 cut(s)	296, 336, 441
BlsI	GCNGC	3 cut(s)	297, 337, 442
Bme1390I	CCNGG	4 cut(s)	15, 276, 316, 422
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	3 cut(s)	12, 108, 473
BmrFI	CCNGG	4 cut(s)	15, 276, 316, 422
BpuEI	CTTGAG	1 cut(s)	461
BpuMI	CCSGG	2 cut(s)	276, 422
Bsa29I	ATCGAT	1 cut(s)	235
BsaJI	CCNNGG	1 cut(s)	14
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 379, 450
Bse118I	RCCGGY	1 cut(s)	86
BseBI	CCWGG	2 cut(s)	15, 316
BseCI	ATCGAT	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	14
BseGI	GGATG	1 cut(s)	384
BseLI	CCNNNNNNNGG	3 cut(s)	93, 379, 450
BseXI	GCAGC	3 cut(s)	282, 322, 452
BshFI	GGCC	1 cut(s)	383
BshVI	ATCGAT	1 cut(s)	235
BsiSI	CCGG	4 cut(s)	87, 276, 376, 421
BslI	CCNNNNNNNGG	3 cut(s)	93, 379, 450
BsnI	GGCC	1 cut(s)	383
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	427
BspACI	CCGC	2 cut(s)	221, 373
BspANI	GGCC	1 cut(s)	383
BspDI	ATCGAT	1 cut(s)	235
BspLI	GGNNCC	3 cut(s)	12, 108, 473
BsrFI	RCCGGY	1 cut(s)	86
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	14
BssMI	GATC	1 cut(s)	427
Bst2UI	CCWGG	2 cut(s)	15, 316
Bst4CI	ACNGT	2 cut(s)	10, 262
Bst6I	CTCTTC	1 cut(s)	497
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstC8I	GCNNGC	5 cut(s)	88, 300, 333, 438, 516
BstDEI	CTNAG	1 cut(s)	309
BstF5I	GGATG	1 cut(s)	384
BstKTI	GATC	1 cut(s)	430
BstMBI	GATC	1 cut(s)	427
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 328, 446
BstNI	CCWGG	2 cut(s)	15, 316
BstNSI	RCATGY	1 cut(s)	440
BstSCI	CCNGG	4 cut(s)	13, 274, 314, 420
BstV1I	GCAGC	3 cut(s)	282, 322, 452
BstX2I	RGATCY	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	427
Bsu15I	ATCGAT	1 cut(s)	235
BsuRI	GGCC	1 cut(s)	383
BsuTUI	ATCGAT	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	384
Cac8I	GCNNGC	5 cut(s)	88, 300, 333, 438, 516
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	283
ClaI	ATCGAT	1 cut(s)	235
CviAII	CATG	1 cut(s)	437
CviJI	RGCY	9 cut(s)	81, 109, 197, 274, 331, 383, 443, 474, 518
CviKI_1	RGCY	9 cut(s)	81, 109, 197, 274, 331, 383, 443, 474, 518
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	1 cut(s)	429
DpnII	GATC	1 cut(s)	427
EaeI	YGGCCR	1 cut(s)	381
Eam1104I	CTCTTC	1 cut(s)	497
EarI	CTCTTC	1 cut(s)	497
EciI	GGCGGA	1 cut(s)	362
Eco24I	GRGCYC	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	452
EcoRII	CCWGG	2 cut(s)	13, 314
EcoT38I	GRGCYC	1 cut(s)	111
FaeI	CATG	1 cut(s)	440
FaiI	YATR	3 cut(s)	28, 438, 531
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FatI	CATG	1 cut(s)	436
Fnu4HI	GCNGC	3 cut(s)	296, 336, 441
FokI	GGATG	1 cut(s)	391
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	3 cut(s)	296, 336, 441
GluI	GCNGC	3 cut(s)	296, 336, 441
HaeIII	GGCC	1 cut(s)	383
HapII	CCGG	4 cut(s)	87, 276, 376, 421
Hin1II	CATG	1 cut(s)	440
HinfI	GANTC	1 cut(s)	525
HpaII	CCGG	4 cut(s)	87, 276, 376, 421
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	466
Hpy188I	TCNGA	2 cut(s)	432, 524
Hpy188III	TCNNGA	1 cut(s)	121
Hpy8I	GTNNAC	1 cut(s)	466
Hpy99I	CGWCG	2 cut(s)	10, 307
HpyAV	CCTTC	2 cut(s)	58, 358
HpyCH4III	ACNGT	2 cut(s)	10, 262
HpyCH4V	TGCA	2 cut(s)	440, 449
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 328, 446
HpyF3I	CTNAG	1 cut(s)	309
Hsp92II	CATG	1 cut(s)	440
KroI	GCCGGC	1 cut(s)	86
KroNI	GCCGGC	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	427
LmnI	GCTCC	3 cut(s)	106, 348, 471
Lsp1109I	GCAGC	3 cut(s)	282, 322, 452
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	1 cut(s)	429
MboI	GATC	1 cut(s)	427
MboII	GAAGA	5 cut(s)	52, 55, 373, 511, 514
MflI	RGATCY	1 cut(s)	427
MhlI	GDGCHC	1 cut(s)	111
MlsI	TGGCCA	1 cut(s)	383
MluCI	AATT	5 cut(s)	160, 174, 216, 224, 267
MluNI	TGGCCA	1 cut(s)	383
MnlI	CCTC	3 cut(s)	137, 485, 498
Mox20I	TGGCCA	1 cut(s)	383
MreI	CGCCGGCG	1 cut(s)	86
MroNI	GCCGGC	1 cut(s)	86
MroXI	GAANNNNTTC	3 cut(s)	68, 228, 368
MscI	TGGCCA	1 cut(s)	383
MseI	TTAA	1 cut(s)	215
Msp20I	TGGCCA	1 cut(s)	383
MspI	CCGG	4 cut(s)	87, 276, 376, 421
MspR9I	CCNGG	4 cut(s)	15, 276, 316, 422
MvaI	CCWGG	2 cut(s)	15, 316
MwoI	GCNNNNNNNGC	3 cut(s)	87, 328, 446
NaeI	GCCGGC	1 cut(s)	88
NciI	CCSGG	2 cut(s)	276, 422
NdeII	GATC	1 cut(s)	427
NgoMIV	GCCGGC	1 cut(s)	86
NlaIII	CATG	1 cut(s)	440
NlaIV	GGNNCC	3 cut(s)	12, 108, 473
NmuCI	GTSAC	1 cut(s)	262
NspI	RCATGY	1 cut(s)	440
PaeI	GCATGC	1 cut(s)	440
PdiI	GCCGGC	1 cut(s)	88
PdmI	GAANNNNTTC	3 cut(s)	68, 228, 368
PfeI	GAWTC	1 cut(s)	525
PkrI	GCNGC	3 cut(s)	297, 337, 442
Psp6I	CCWGG	2 cut(s)	13, 314
PspGI	CCWGG	2 cut(s)	13, 314
PspN4I	GGNNCC	3 cut(s)	12, 108, 473
PspPI	GGNCC	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	427
SaqAI	TTAA	1 cut(s)	215
SatI	GCNGC	3 cut(s)	296, 336, 441
Sau3AI	GATC	1 cut(s)	427
Sau96I	GGNCC	1 cut(s)	283
ScrFI	CCNGG	4 cut(s)	15, 276, 316, 422
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	6 cut(s)	98, 129, 199, 405, 455, 483
SgrAI	CRCCGGYG	1 cut(s)	86
SinI	GGWCC	1 cut(s)	283
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
SphI	GCATGC	1 cut(s)	440
Sse9I	AATT	5 cut(s)	160, 174, 216, 224, 267
SsiI	CCGC	2 cut(s)	221, 373
StyD4I	CCNGG	4 cut(s)	13, 274, 314, 420
TaaI	ACNGT	2 cut(s)	10, 262
TaqI	TCGA	1 cut(s)	235
TasI	AATT	5 cut(s)	160, 174, 216, 224, 267
TfiI	GAWTC	1 cut(s)	525
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	3 cut(s)	295, 335, 440
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	2 cut(s)	168, 221
VpaK11BI	GGWCC	1 cut(s)	283
XapI	RAATTY	1 cut(s)	160
XceI	RCATGY	1 cut(s)	440
XmnI	GAANNNNTTC	3 cut(s)	68, 228, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.