Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001660

Physical Location & Seq

Genomic Coordinates Reverse (-)

12769602 .. 12771520

Gene Structure 1919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g18000.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGAGAAAAAAATATAAAAACAAGAATCATACCACTAGACCAAACGCTACACTGGTAAACCCACGGAGCCTCCTTCTCTCTCTCTCTCCCTCTGCAAATCAGCGGAATCCAGGTGCGATGACGACCGTTCCGGGACAACTGATCTGGGAGATCGTGAAGAAGAACAACTCCTTCTTGGTGAAGGAGTTCGGCCGCGGCAACGCCGGTGTCCGCTTCAGCAAGGAGCCCAACAACCTCTACAACCTCCATTCCTACAAGCATTCCGGTTTGGCGAACAAGAAGACGGTTACTATTCAGGCAGGAGGCAAAGACCAGTCTGTGGTGCTCGCCACCACCAAGACCAAGAAGCAGAACAAGCCCGCCAGTCTGCTCCACAAGTCTGTGATCCGAAAGGAGTTTCCCCGCGCCGCCAAGGCTGTTACCAATCAGGTTGCGGATAACTTCTACAGACCTGATTTGAAGAGAGCTGCCCTTGCCAGGCTCAGTGCCGTTCACAAGAGTCTCAGGGTTGCCAAGTCTGGTGTGAAGAAGAGGAACAGGCAGGCTGTCAAGACCCCCGGTAGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28e

Protein Analysis

190

Amino Acids

21.03

Weight (kDa)

11.54

Isoelectric Point (pI)

30.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19730 AT2G19730 AT2G19730 AT4G29410 AT4G29410
fragaria_vesca	FvH4_1g06820 FvH4_6g32910
malus_domestica	MD02G1072800.v1.1 MD07G1062600.v1.1 MD09G1196500.v1.1 MD15G1202600.v1.1
prunus_persica	Prupe.3G052900_v2.0.a1 Prupe.7G214600_v2.0.a1 Prupe.7G214600_v2.0.a1
pyrus_communis	pycom09g11360 pycom15g18000 pycom17g18620
rosa_chinensis	RchiOBHm_Chr1g0323731 RchiOBHm_Chr2g0092591 RchiOBHm_Chr2g0142381 RchiOBHm_Chr2g0160241 RchiOBHm_Chr5g0080201
rosa_laevigata	RLG00000016326 RLG00000019956
rosa_multiflora	Rmu_sc0001211.1_g000033 Rmu_sc0004296.1_g000002 Rmu_sc0020806.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102670 Rroxscaffold_2G00103250 Rroxscaffold_2G00148940
rosa_rugosa	Rorug02G0027800 Rorug02G0028000 Rorug02G0372400
rosa_samantha	Rh2AG073700 Rh2AG424200 Rh2BG074600 Rh2BG433800 Rh2BG561300 Rh2CG075700 Rh2DG072800 Rh2DG443700 Rh2DG569800 Rh5DG397100
rosa_wichuraiana	Rw0G015000 Rw2G005920 Rw2G045310 Rw5G024190 Rw7G017720 Rw7G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	319
AccII	CGCG	2 cut(s)	195, 405
AciI	CCGC	8 cut(s)	103, 193, 195, 211, 360, 403, 408, 434
AclWI	GGATC	1 cut(s)	379
AcoI	YGGCCR	1 cut(s)	190
AcuI	CTGAAG	1 cut(s)	199
AfiI	CCNNNNNNNGG	3 cut(s)	319, 477, 561
AgsI	TTSAA	1 cut(s)	460
AjnI	CCWGG	2 cut(s)	109, 476
AluBI	AGCT	1 cut(s)	467
AluI	AGCT	1 cut(s)	467
Alw21I	GWGCWC	1 cut(s)	327
Alw26I	GTCTC	1 cut(s)	506
AlwI	GGATC	1 cut(s)	379
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	1 cut(s)	467
Asp700I	GAANNNNTTC	1 cut(s)	185
AspLEI	GCGC	1 cut(s)	407
AsuC2I	CCSGG	2 cut(s)	132, 558
AsuHPI	GGTGA	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	228
BbsI	GAAGAC	1 cut(s)	287
Bbv12I	GWGCWC	1 cut(s)	327
BbvI	GCAGC	1 cut(s)	454
BceAI	ACGGC	1 cut(s)	473
BciT130I	CCWGG	2 cut(s)	111, 478
BcnI	CCSGG	2 cut(s)	132, 558
BcoDI	GTCTC	1 cut(s)	506
BfaI	CTAG	1 cut(s)	36
BfmI	CTRYAG	1 cut(s)	445
BglI	GCCNNNNNGGC	1 cut(s)	413
BisI	GCNGC	4 cut(s)	193, 196, 408, 468
BlsI	GCNGC	4 cut(s)	194, 197, 409, 469
Bme1390I	CCNGG	4 cut(s)	111, 132, 478, 558
BmiI	GGNNCC	2 cut(s)	68, 225
BmrFI	CCNGG	4 cut(s)	111, 132, 478, 558
BpiI	GAAGAC	1 cut(s)	287
BpuMI	CCSGG	2 cut(s)	132, 558
BsaJI	CCNNGG	4 cut(s)	62, 193, 411, 556
BsaWI	WCCGGW	1 cut(s)	263
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bsc4I	CCNNNNNNNGG	3 cut(s)	319, 477, 561
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	3 cut(s)	57, 313, 363
BseBI	CCWGG	2 cut(s)	111, 478
BseDI	CCNNGG	4 cut(s)	62, 193, 411, 556
BseLI	CCNNNNNNNGG	3 cut(s)	319, 477, 561
BseMII	CTCAG	2 cut(s)	496, 517
BseNI	ACTGG	3 cut(s)	57, 313, 363
BseX3I	CGGCCG	1 cut(s)	190
BseXI	GCAGC	1 cut(s)	454
Bsh1236I	CGCG	2 cut(s)	195, 405
Bsh1285I	CGRYCG	2 cut(s)	126, 193
BshFI	GGCC	1 cut(s)	192
BsiEI	CGRYCG	2 cut(s)	126, 193
BsiHKAI	GWGCWC	1 cut(s)	327
BsiSI	CCGG	4 cut(s)	131, 204, 264, 558
BslFI	GGGAC	1 cut(s)	147
BslI	CCNNNNNNNGG	3 cut(s)	319, 477, 561
BsmAI	GTCTC	1 cut(s)	506
BsmFI	GGGAC	1 cut(s)	147
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	1 cut(s)	192
Bsp1286I	GDGCHC	2 cut(s)	228, 327
Bsp143I	GATC	3 cut(s)	141, 150, 384
BspACI	CCGC	8 cut(s)	103, 193, 195, 211, 360, 403, 408, 434
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	2 cut(s)	495, 516
BspFNI	CGCG	2 cut(s)	195, 405
BspLI	GGNNCC	2 cut(s)	68, 225
BspPI	GGATC	1 cut(s)	379
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	3 cut(s)	57, 313, 363
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	4 cut(s)	62, 193, 411, 556
BssMI	GATC	3 cut(s)	141, 150, 384
BssT1I	CCWWGG	1 cut(s)	411
Bst2UI	CCWGG	2 cut(s)	111, 478
Bst4CI	ACNGT	2 cut(s)	127, 286
Bst6I	CTCTTC	2 cut(s)	455, 524
BstC8I	GCNNGC	3 cut(s)	327, 360, 543
BstDEI	CTNAG	2 cut(s)	482, 503
BstDSI	CCRYGG	2 cut(s)	62, 193
BstFNI	CGCG	2 cut(s)	195, 405
BstHHI	GCGC	1 cut(s)	407
BstKTI	GATC	3 cut(s)	144, 153, 387
BstMAI	GTCTC	1 cut(s)	506
BstMBI	GATC	3 cut(s)	141, 150, 384
BstMCI	CGRYCG	2 cut(s)	126, 193
BstMWI	GCNNNNNNNGC	3 cut(s)	355, 413, 473
BstNI	CCWGG	2 cut(s)	111, 478
BstSCI	CCNGG	4 cut(s)	109, 130, 476, 556
BstSFI	CTRYAG	1 cut(s)	445
BstUI	CGCG	2 cut(s)	195, 405
BstV1I	GCAGC	1 cut(s)	454
BstV2I	GAAGAC	1 cut(s)	287
BstZI	CGGCCG	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	192
BtgI	CCRYGG	2 cut(s)	62, 193
BtgZI	GCGATG	1 cut(s)	131
BtsIMutI	CAGTG	2 cut(s)	50, 490
Cac8I	GCNNGC	3 cut(s)	327, 360, 543
CfoI	GCGC	1 cut(s)	407
Cfr10I	RCCGGY	1 cut(s)	203
Cfr42I	CCGCGG	1 cut(s)	196
CviJI	RGCY	8 cut(s)	69, 192, 226, 358, 416, 467, 481, 545
CviKI_1	RGCY	8 cut(s)	69, 192, 226, 358, 416, 467, 481, 545
DdeI	CTNAG	2 cut(s)	482, 503
DpnI	GATC	3 cut(s)	143, 152, 386
DpnII	GATC	3 cut(s)	141, 150, 384
EaeI	YGGCCR	1 cut(s)	190
EagI	CGGCCG	1 cut(s)	190
Eam1104I	CTCTTC	2 cut(s)	455, 524
EarI	CTCTTC	2 cut(s)	455, 524
EclXI	CGGCCG	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	411
Eco24I	GRGCYC	1 cut(s)	228
Eco52I	CGGCCG	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	199
EcoRII	CCWGG	2 cut(s)	109, 476
EcoT14I	CCWWGG	1 cut(s)	411
EcoT38I	GRGCYC	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	411
FaiI	YATR	2 cut(s)	15, 30
FaqI	GGGAC	1 cut(s)	147
FauI	CCCGC	2 cut(s)	367, 410
Fnu4HI	GCNGC	4 cut(s)	193, 196, 408, 468
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	4 cut(s)	193, 196, 408, 468
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	1 cut(s)	406
GluI	GCNGC	4 cut(s)	193, 196, 408, 468
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	4 cut(s)	131, 204, 264, 558
HhaI	GCGC	1 cut(s)	407
Hin6I	GCGC	1 cut(s)	405
HinP1I	GCGC	1 cut(s)	405
HinfI	GANTC	3 cut(s)	25, 106, 499
HpaII	CCGG	4 cut(s)	131, 204, 264, 558
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	2 cut(s)	58, 493
Hpy188I	TCNGA	1 cut(s)	389
Hpy188III	TCNNGA	2 cut(s)	154, 550
Hpy8I	GTNNAC	2 cut(s)	58, 493
HpyAV	CCTTC	3 cut(s)	83, 175, 181
HpyCH4III	ACNGT	2 cut(s)	127, 286
HpyCH4V	TGCA	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	3 cut(s)	355, 413, 473
HpyF3I	CTNAG	2 cut(s)	482, 503
HspAI	GCGC	1 cut(s)	405
KspI	CCGCGG	1 cut(s)	196
Kzo9I	GATC	3 cut(s)	141, 150, 384
LmnI	GCTCC	3 cut(s)	66, 223, 375
Lsp1109I	GCAGC	1 cut(s)	454
MaeI	CTAG	1 cut(s)	36
MaeIII	GTNAC	2 cut(s)	286, 418
MalI	GATC	3 cut(s)	143, 152, 386
MboI	GATC	3 cut(s)	141, 150, 384
MboII	GAAGA	6 cut(s)	169, 172, 292, 472, 538, 541
MhlI	GDGCHC	2 cut(s)	228, 327
MlyI	GAGTC	1 cut(s)	508
MnlI	CCTC	6 cut(s)	80, 100, 245, 254, 296, 525
MroXI	GAANNNNTTC	1 cut(s)	185
MspA1I	CMGCKG	2 cut(s)	103, 195
MspI	CCGG	4 cut(s)	131, 204, 264, 558
MspR9I	CCNGG	4 cut(s)	111, 132, 478, 558
Mva1269I	GAATGC	1 cut(s)	259
MvaI	CCWGG	2 cut(s)	111, 478
MvnI	CGCG	2 cut(s)	195, 405
MwoI	GCNNNNNNNGC	3 cut(s)	355, 413, 473
NciI	CCSGG	2 cut(s)	132, 558
NdeII	GATC	3 cut(s)	141, 150, 384
NlaIV	GGNNCC	2 cut(s)	68, 225
PctI	GAATGC	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	185
PfeI	GAWTC	2 cut(s)	25, 106
PflMI	CCANNNNNTGG	1 cut(s)	319
PfoI	TCCNGGA	1 cut(s)	130
PkrI	GCNGC	4 cut(s)	194, 197, 409, 469
PleI	GAGTC	1 cut(s)	507
PpsI	GAGTC	1 cut(s)	507
Psp6I	CCWGG	2 cut(s)	109, 476
PspGI	CCWGG	2 cut(s)	109, 476
PspN4I	GGNNCC	2 cut(s)	68, 225
SacII	CCGCGG	1 cut(s)	196
SatI	GCNGC	4 cut(s)	193, 196, 408, 468
Sau3AI	GATC	3 cut(s)	141, 150, 384
SchI	GAGTC	1 cut(s)	508
ScrFI	CCNGG	4 cut(s)	111, 132, 478, 558
SduI	GDGCHC	2 cut(s)	228, 327
SetI	ASST	6 cut(s)	115, 237, 246, 432, 454, 469
SfcI	CTRYAG	1 cut(s)	445
Sfr303I	CCGCGG	1 cut(s)	196
SgrAI	CRCCGGYG	1 cut(s)	203
SgrBI	CCGCGG	1 cut(s)	196
SsiI	CCGC	8 cut(s)	103, 193, 195, 211, 360, 403, 408, 434
SspMI	CTAG	1 cut(s)	36
StyD4I	CCNGG	4 cut(s)	109, 130, 476, 556
StyI	CCWWGG	1 cut(s)	411
TaaI	ACNGT	2 cut(s)	127, 286
TauI	GCSGC	3 cut(s)	195, 198, 410
TfiI	GAWTC	2 cut(s)	25, 106
TscAI	CASTG	2 cut(s)	57, 490
TseI	GCWGC	1 cut(s)	467
TspGWI	ACGGA	1 cut(s)	79
TspRI	CASTG	2 cut(s)	57, 490
Van91I	CCANNNNNTGG	1 cut(s)	319
XmnI	GAANNNNTTC	1 cut(s)	185
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.