Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001660

Physical Location & Seq

Genomic Coordinates Reverse (-)

11164641 .. 11165034

Gene Structure 394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55360

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGTGGGAGATAGTGAAGAAGAACAACTCTTTTCTGGTGAAGGAGTTCGGCAGAAGCCACGCCGGCGTTAGGTTCAGCAAGGAGCCCAGCAACCTCTTGAATCTCCACTCCTACAAGCAATCTGGGTTGGCAAACAAAAAAACTGTGATAATTCAGTCCAGTAAGGACCAATCTGTGTTGCTGGCGACGACTACGACCAGGAAGCATCTGATAGTGAATTGCATGATTGCATATGATAGTTTCCAACTTTACAAAGTGAATTGTAACCAGAGAATGCAGGGCATAGGAAATAGAGTACGTAAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28e

Protein Analysis

102

Amino Acids

11.69

Weight (kDa)

10.26

Isoelectric Point (pI)

39.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L28e	PF01778	1 - 69	3.7e-19	Ribosomal L28e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19730 AT2G19730 AT2G19730 AT4G29410 AT4G29410
fragaria_vesca	FvH4_1g06820 FvH4_6g32910
malus_domestica	MD02G1072800.v1.1 MD07G1062600.v1.1 MD09G1196500.v1.1 MD15G1202600.v1.1
prunus_persica	Prupe.3G052900_v2.0.a1 Prupe.7G214600_v2.0.a1 Prupe.7G214600_v2.0.a1
pyrus_communis	pycom09g11360 pycom15g18000 pycom17g18620
rosa_chinensis	RchiOBHm_Chr1g0323731 RchiOBHm_Chr2g0092591 RchiOBHm_Chr2g0142381 RchiOBHm_Chr2g0160241 RchiOBHm_Chr5g0080201
rosa_laevigata	RLG00000016326 RLG00000019956
rosa_multiflora	Rmu_sc0001211.1_g000033 Rmu_sc0004296.1_g000002 Rmu_sc0020806.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102670 Rroxscaffold_2G00103250 Rroxscaffold_2G00148940
rosa_rugosa	Rorug02G0027800 Rorug02G0028000 Rorug02G0372400
rosa_samantha	Rh2AG073700 Rh2AG424200 Rh2BG074600 Rh2BG433800 Rh2BG561300 Rh2CG075700 Rh2DG072800 Rh2DG443700 Rh2DG569800 Rh5DG397100
rosa_wichuraiana	Rw0G015000 Rw2G005920 Rw2G045310 Rw5G024190 Rw7G017720 Rw7G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	297
AfiI	CCNNNNNNNGG	1 cut(s)	69
AgsI	TTSAA	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	197
Asp700I	GAANNNNTTC	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	87
BciT130I	CCWGG	1 cut(s)	199
BglI	GCCNNNNNGGC	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	1 cut(s)	199
BmsI	GCATC	1 cut(s)	214
BsaAI	YACGTR	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	199
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	159
BseYI	CCCAGC	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	63
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmI	GAATGC	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	84
BsrFI	RCCGGY	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	159
BssAI	RCCGGY	1 cut(s)	62
Bst2UI	CCWGG	1 cut(s)	199
Bst4CI	ACNGT	1 cut(s)	145
BstBAI	YACGTR	1 cut(s)	299
BstC8I	GCNNGC	2 cut(s)	64, 183
BstMWI	GCNNNNNNNGC	1 cut(s)	63
BstNI	CCWGG	1 cut(s)	199
BstSCI	CCNGG	1 cut(s)	197
BstSNI	TACGTA	1 cut(s)	299
Cac8I	GCNNGC	2 cut(s)	64, 183
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	296
CviAII	CATG	1 cut(s)	223
CviJI	RGCY	2 cut(s)	57, 85
CviKI_1	RGCY	2 cut(s)	57, 85
CviQI	GTAC	1 cut(s)	296
Eco105I	TACGTA	1 cut(s)	299
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	197
EcoT38I	GRGCYC	1 cut(s)	87
FaeI	CATG	1 cut(s)	226
FaiI	YATR	4 cut(s)	224, 232, 234, 284
FatI	CATG	1 cut(s)	222
FauNDI	CATATG	1 cut(s)	232
FriOI	GRGCYC	1 cut(s)	87
GsaI	CCCAGC	1 cut(s)	90
HapII	CCGG	1 cut(s)	63
Hin1II	CATG	1 cut(s)	226
HinfI	GANTC	1 cut(s)	100
HpaII	CCGG	1 cut(s)	63
HphI	GGTGA	1 cut(s)	49
Hpy188I	TCNGA	1 cut(s)	210
Hpy188III	TCNNGA	1 cut(s)	97
Hpy99I	CGWCG	1 cut(s)	190
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	3 cut(s)	222, 230, 277
HpyF10VI	GCNNNNNNNGC	1 cut(s)	63
HpySE526I	ACGT	1 cut(s)	298
Hsp92II	CATG	1 cut(s)	226
KroI	GCCGGC	1 cut(s)	62
KroNI	GCCGGC	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	82
LweI	GCATC	1 cut(s)	214
MaeII	ACGT	1 cut(s)	298
MaeIII	GTNAC	1 cut(s)	263
MboII	GAAGA	2 cut(s)	28, 31
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	3 cut(s)	150, 217, 259
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	1 cut(s)	104
MreI	CGCCGGCG	1 cut(s)	62
MroNI	GCCGGC	1 cut(s)	62
MroXI	GAANNNNTTC	1 cut(s)	44
MspI	CCGG	1 cut(s)	63
MspR9I	CCNGG	1 cut(s)	199
Mva1269I	GAATGC	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	199
MwoI	GCNNNNNNNGC	1 cut(s)	63
NaeI	GCCGGC	1 cut(s)	64
NdeI	CATATG	1 cut(s)	232
NgoMIV	GCCGGC	1 cut(s)	62
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	1 cut(s)	84
PctI	GAATGC	1 cut(s)	279
PdiI	GCCGGC	1 cut(s)	64
PdmI	GAANNNNTTC	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	100
Ppu21I	YACGTR	1 cut(s)	299
Psp6I	CCWGG	1 cut(s)	197
PspFI	CCCAGC	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	1 cut(s)	166
RsaI	GTAC	1 cut(s)	297
RsaNI	GTAC	1 cut(s)	296
Sau96I	GGNCC	1 cut(s)	166
ScrFI	CCNGG	1 cut(s)	199
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	3 cut(s)	74, 96, 301
SfaNI	GCATC	1 cut(s)	214
SgrAI	CRCCGGYG	1 cut(s)	62
SinI	GGWCC	1 cut(s)	166
SnaBI	TACGTA	1 cut(s)	299
Sse9I	AATT	3 cut(s)	150, 217, 259
StyD4I	CCNGG	1 cut(s)	197
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	1 cut(s)	301
TasI	AATT	3 cut(s)	150, 217, 259
TfiI	GAWTC	1 cut(s)	100
VpaK11BI	GGWCC	1 cut(s)	166
XmnI	GAANNNNTTC	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.