Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001660

Physical Location & Seq

Genomic Coordinates Reverse (-)

2229072 .. 2232031

Gene Structure 2960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0028000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1971 bp

ATGGACGTCGATCACGATCACGATCACGGCTACGGTTCTCATTTGGTTAGAATGGAAGCGGCGGACGTCGCCTTCGGATTTCGGCCTCGTGATGTACCCGAGAGACTGATATACGATGACGAAAGCACACCGGAAGAAATTAGCATAGATGGTGAGAGTCACTGGATACAGAAGCAACTTGAACTGTTGTTTGGTCCATTGAGCAGCAATGACATCTCCAGGTTTTTGTACATGCACCATGTGCGAAAACTGGATATTCCTTTTATTGCAATGTACGGGAAAGATGACTGCCTTAGCTTATTGAAAGATCATCCTGAACAACCTGAAGAAGAAAAATCTAAAGTAAAGTGGTACAGGATTCTGTGGGCCGCTCAGGAATTGCACAAAAAGTGGTTGCTGTTTCAGAATCAGAAAAGGGCTTTGCGATTTTCCTACACTAAGCGCTTTGAGGAAGAATCTCGACTAGGACTCATACATGATAAGGCGGCTCCACAGCTTTTTGAATCAATTATCAACTCACTCCAAGCTGCAGAGTCACAGAGGGAGGTTGAGGATATCAACAGCAAGTTTAACTTGCATTTCCCTGCAACTGAGGGTCCGGCTACTATTGTTATCTGTAGTGATCCAGGTGTCAGTAGAGCTAAAAACTCGTTGCTTACGGAATATGGAAGGGCTTTGTTCAATAAAGTCTCTGTGGCACCGCCATATCAACGGAATGAAACTGCACCACCCAGGGTCATGGCTTGCTGTTGGGGCCCTGGGGACCCTGCAACAAATTTAGTGATGTTAGATTCATGTGGGGAGATTCTAGATGTACTTTGCACCGGGAGTCTCTTACCTGGACCATACCCTTCTTTGATGAAGCTACTCAACAGCGTGAGTGATACAATGATGATGAAACCTAACAGTAGAGCAAGCCCCCTAAGGATTGTGTATGGGGATGAATCTCTGGCTCGCCTATATGAGAATTCTGAGATTTCATCGGAGCAGTTACCTGGACGATCAGGCATTGCCAGGCGGGCTGTGGCTCTAGGGCGTTATCTTCAAAATCCATTGGCAATGGTTGCCACATTGTGTGGAGCTGGAAGAGAAATCCTATCTTGGAAACTACTCAATTCTCCTGATGAGAACTATCTCAACCCGGACGAGAAGTATGCAGTGATTGAACAGGTCATGATAGATGTGACAAACCAGGTTGGCCTAGACATAAATTTGGCTATAAACCATGAATGGTTATTTGCACCTTTGCAATTTATTTCTGGGCTTGGACCTCAAATGGCAGCATCTCTGAAGAAGTCATTGGTAAAATCTGGTAAAGTATCTACTCGAAATGAGTTTGCAACATTACATGGGATGGGTGCATGGGTGTATGTTAATGCAGTTGGTTTCTTGCGTGTGCGGCTGAGTGGGATGCTTGCTGCTAGCAGCATCAGCAGCCAATTTTTTGCTCTGTTGGATGATACAAGAATACATCCAGATTTATACTGTTGTGCAGAACAAATGGCCCAAGCTGTTTATGGTGACATGGATGTTCTGGTGCAGAGCATTAGGGATCTACCTAGTTACCTCGAGAAGCTTGACATCGAAGCATATGCTAGAAGCACAGGATTGCATTATTTGATGCAAACATTGTGCTGTATAAGGGAAGAGTTAATACAAGGGTTCCAAGAGTGGCGTAAAAAATATGAAGAACTAAGTGATGATGACATGTTCTATATGATGACCGGTGAAACTCGCGACACCCTCTCGGAAGGAAGCATTGTGCAGGCCACAATTCGCAGGGTGCTTTCCAAAACAGCAATTTGTACTGTGGGAGCTGGGTTGATTTGTTTGCTCTGGAGAGACGACTTTAAAGTTGATGGGAGGGAAATTTCAGACTTATCACAAGTAATGAAGGTGGGTGACACTATCACTTGCAAGATCAAATCTCTTCGAAAGAAGCAATGGGATGTGAAACTCAGTAGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28e

Protein Analysis

656

Amino Acids

74.05

Weight (kDa)

5.58

Isoelectric Point (pI)

41.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YqgF	PF14639	281 - 359	8.4e-10	Holliday-junction resolvase-like of SPT6
HHH_7	PF14635	365 - 466	2.4e-14	Helix-hairpin-helix motif
Spt6_S1	PF21710	570 - 654	3.8e-11	Spt6, S1/OB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19730 AT2G19730 AT2G19730 AT4G29410 AT4G29410
fragaria_vesca	FvH4_1g06820 FvH4_6g32910
malus_domestica	MD02G1072800.v1.1 MD07G1062600.v1.1 MD09G1196500.v1.1 MD15G1202600.v1.1
prunus_persica	Prupe.3G052900_v2.0.a1 Prupe.7G214600_v2.0.a1 Prupe.7G214600_v2.0.a1
pyrus_communis	pycom09g11360 pycom15g18000 pycom17g18620
rosa_chinensis	RchiOBHm_Chr1g0323731 RchiOBHm_Chr2g0092591 RchiOBHm_Chr2g0142381 RchiOBHm_Chr2g0160241 RchiOBHm_Chr5g0080201
rosa_laevigata	RLG00000016326 RLG00000019956
rosa_multiflora	Rmu_sc0001211.1_g000033 Rmu_sc0004296.1_g000002 Rmu_sc0020806.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102670 Rroxscaffold_2G00103250 Rroxscaffold_2G00148940
rosa_rugosa	Rorug02G0027800 Rorug02G0028000 Rorug02G0372400
rosa_samantha	Rh2AG073700 Rh2AG424200 Rh2BG074600 Rh2BG433800 Rh2BG561300 Rh2CG075700 Rh2DG072800 Rh2DG443700 Rh2DG569800 Rh5DG397100
rosa_wichuraiana	Rw0G015000 Rw2G005920 Rw2G045310 Rw5G024190 Rw7G017720 Rw7G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	9, 69
AccB1I	GGYRCC	1 cut(s)	697
AccBSI	CCGCTC	1 cut(s)	371
AccII	CGCG	1 cut(s)	1737
AciI	CCGC	7 cut(s)	59, 62, 369, 485, 701, 1018, 1399
AclWI	GGATC	2 cut(s)	617, 1560
AcsI	RAATTY	4 cut(s)	775, 967, 1210, 1869
AcuI	CTGAAG	2 cut(s)	345, 1310
AcyI	GRCGYC	2 cut(s)	6, 66
AdeI	CACNNNGTG	2 cut(s)	241, 1074
AfaI	GTAC	6 cut(s)	96, 230, 275, 353, 816, 1807
AfeI	AGCGCT	1 cut(s)	443
AflIII	ACRYGT	1 cut(s)	1707
AgeI	ACCGGT	1 cut(s)	1724
AgsI	TTSAA	6 cut(s)	182, 304, 503, 682, 1046, 1166
AjnI	CCWGG	8 cut(s)	218, 625, 731, 757, 838, 994, 1013, 1191
AjuI	GAANNNNNNNTTGG	4 cut(s)	174, 206, 1283, 1315
AluBI	AGCT	9 cut(s)	297, 496, 527, 641, 865, 1082, 1511, 1576, 1817
AluI	AGCT	9 cut(s)	297, 496, 527, 641, 865, 1082, 1511, 1576, 1817
Alw26I	GTCTC	4 cut(s)	97, 694, 836, 1836
AlwI	GGATC	2 cut(s)	617, 1560
Ama87I	CYCGRG	2 cut(s)	98, 1568
Aor51HI	AGCGCT	1 cut(s)	443
AoxI	GGCC	6 cut(s)	83, 366, 754, 1198, 1503, 1767
ApaI	GGGCCC	1 cut(s)	758
ApeKI	GCWGC	6 cut(s)	204, 527, 1280, 1418, 1425, 1434
ApoI	RAATTY	4 cut(s)	775, 967, 1210, 1869
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
AsiGI	ACCGGT	1 cut(s)	1724
AspLEI	GCGC	1 cut(s)	444
AspS9I	GGNCC	9 cut(s)	194, 366, 596, 754, 755, 763, 842, 1268, 1504
AsuC2I	CCSGG	2 cut(s)	826, 1142
AsuHPI	GGTGA	4 cut(s)	164, 1532, 1739, 1913
AsuII	TTCGAA	1 cut(s)	1933
AsuNHI	GCTAGC	1 cut(s)	1421
AvaI	CYCGRG	2 cut(s)	98, 1568
AvaII	GGWCC	5 cut(s)	194, 596, 763, 842, 1268
AxyI	CCTNAGG	1 cut(s)	923
BaeGI	GKGCMC	1 cut(s)	758
BanI	GGYRCC	1 cut(s)	697
BanII	GRGCYC	1 cut(s)	758
BarI	GAAGNNNNNNTAC	2 cut(s)	1638, 1670
BauI	CACGAG	1 cut(s)	87
BbvI	GCAGC	6 cut(s)	216, 514, 1292, 1405, 1437, 1446
BccI	CCATC	3 cut(s)	143, 1348, 1853
BceAI	ACGGC	1 cut(s)	43
BcgI	CGANNNNNNTGC	4 cut(s)	1136, 1170, 1574, 1608
BciT130I	CCWGG	8 cut(s)	220, 627, 733, 759, 840, 996, 1015, 1193
BciVI	GTATCC	1 cut(s)	159
BcnI	CCSGG	2 cut(s)	826, 1142
BcoDI	GTCTC	4 cut(s)	97, 694, 836, 1836
BfaI	CTAG	8 cut(s)	464, 809, 1031, 1202, 1422, 1560, 1596, 1969
BfmI	CTRYAG	2 cut(s)	528, 616
BfoI	RGCGCY	1 cut(s)	445
BfuI	GTATCC	1 cut(s)	159
BglI	GCCNNNNNGGC	1 cut(s)	1019
Bme18I	GGWCC	5 cut(s)	194, 596, 763, 842, 1268
BmeT110I	CYCGRG	2 cut(s)	98, 1568
BmgT120I	GGNCC	9 cut(s)	194, 366, 596, 754, 755, 763, 842, 1268, 1504
BmiI	GGNNCC	8 cut(s)	489, 597, 699, 755, 756, 764, 765, 1664
BmsI	GCATC	4 cut(s)	1292, 1401, 1437, 1611
BmtI	GCTAGC	1 cut(s)	1425
BpmI	CTGGAG	2 cut(s)	202, 1858
Bpu10I	CCTNAGC	2 cut(s)	293, 372
Bpu14I	TTCGAA	1 cut(s)	1933
BpuMI	CCSGG	2 cut(s)	826, 1142
BsaBI	GATNNNNATC	2 cut(s)	15, 21
BsaHI	GRCGYC	2 cut(s)	6, 66
BsaJI	CCNNGG	4 cut(s)	731, 732, 757, 758
BsaWI	WCCGGW	2 cut(s)	130, 1724
Bse118I	RCCGGY	1 cut(s)	1724
Bse1I	ACTGG	2 cut(s)	167, 255
Bse21I	CCTNAGG	1 cut(s)	923
Bse3DI	GCAATG	5 cut(s)	214, 276, 1008, 1065, 1949
Bse8I	GATNNNNATC	2 cut(s)	15, 21
BseBI	CCWGG	8 cut(s)	220, 627, 733, 759, 840, 996, 1015, 1193
BseDI	CCNNGG	4 cut(s)	731, 732, 757, 758
BseGI	GGATG	8 cut(s)	310, 946, 1359, 1416, 1462, 1471, 1534, 1954
BseJI	GATNNNNATC	2 cut(s)	15, 21
BseMI	GCAATG	5 cut(s)	214, 276, 1008, 1065, 1949
BseMII	CTCAG	4 cut(s)	386, 582, 963, 1394
BseNI	ACTGG	2 cut(s)	167, 255
BseSI	GKGCMC	1 cut(s)	758
BseXI	GCAGC	6 cut(s)	216, 514, 1292, 1405, 1437, 1446
BseYI	CCCAGC	1 cut(s)	1817
BsgI	GTGCAG	4 cut(s)	708, 1512, 1559, 1784
Bsh1236I	CGCG	1 cut(s)	1737
BshFI	GGCC	6 cut(s)	85, 368, 756, 1200, 1505, 1769
BshNI	GGYRCC	1 cut(s)	697
BshTI	ACCGGT	1 cut(s)	1724
BsiHKCI	CYCGRG	2 cut(s)	98, 1568
BsiSI	CCGG	5 cut(s)	131, 599, 825, 1142, 1725
BslFI	GGGAC	1 cut(s)	776
BsmAI	GTCTC	4 cut(s)	97, 694, 836, 1836
BsmBI	CGTCTC	1 cut(s)	1836
BsmFI	GGGAC	1 cut(s)	776
BsnI	GGCC	6 cut(s)	85, 368, 756, 1200, 1505, 1769
BsoBI	CYCGRG	2 cut(s)	98, 1568
Bsp119I	TTCGAA	1 cut(s)	1933
Bsp120I	GGGCCC	1 cut(s)	754
Bsp1286I	GDGCHC	1 cut(s)	758
Bsp1407I	TGTACA	1 cut(s)	228
Bsp143I	GATC	8 cut(s)	10, 16, 22, 307, 622, 1001, 1552, 1920
Bsp68I	TCGCGA	1 cut(s)	1737
BspACI	CCGC	7 cut(s)	59, 62, 369, 485, 701, 1018, 1399
BspANI	GGCC	6 cut(s)	85, 368, 756, 1200, 1505, 1769
BspCNI	CTCAG	5 cut(s)	385, 583, 964, 1395, 1971
BspFNI	CGCG	1 cut(s)	1737
BspHI	TCATGA	1 cut(s)	1173
BspLI	GGNNCC	8 cut(s)	489, 597, 699, 755, 756, 764, 765, 1664
BspMAI	CTGCAG	1 cut(s)	532
BspOI	GCTAGC	1 cut(s)	1425
BspPI	GGATC	2 cut(s)	617, 1560
BspT104I	TTCGAA	1 cut(s)	1933
BspT107I	GGYRCC	1 cut(s)	697
BsrBI	CCGCTC	1 cut(s)	371
BsrDI	GCAATG	5 cut(s)	214, 276, 1008, 1065, 1949
BsrFI	RCCGGY	1 cut(s)	1724
BsrGI	TGTACA	1 cut(s)	228
BsrI	ACTGG	2 cut(s)	167, 255
BssAI	RCCGGY	1 cut(s)	1724
BssECI	CCNNGG	4 cut(s)	731, 732, 757, 758
BssMI	GATC	8 cut(s)	10, 16, 22, 307, 622, 1001, 1552, 1920
BssNI	GRCGYC	2 cut(s)	6, 66
BssSI	CACGAG	1 cut(s)	87
Bst2BI	CACGAG	1 cut(s)	87
Bst2UI	CCWGG	8 cut(s)	220, 627, 733, 759, 840, 996, 1015, 1193
Bst4CI	ACNGT	5 cut(s)	35, 186, 908, 1487, 1810
Bst6I	CTCTTC	3 cut(s)	1081, 1641, 1935
BstACI	GRCGYC	2 cut(s)	6, 66
BstAPI	GCANNNNNTGC	2 cut(s)	241, 1064
BstAUI	TGTACA	1 cut(s)	228
BstBI	TTCGAA	1 cut(s)	1933
BstC8I	GCNNGC	7 cut(s)	745, 916, 955, 1020, 1416, 1423, 1767
BstDEI	CTNAG	9 cut(s)	293, 372, 438, 591, 923, 972, 1403, 1694, 1958
BstF5I	GGATG	8 cut(s)	310, 946, 1359, 1416, 1462, 1471, 1534, 1954
BstFNI	CGCG	1 cut(s)	1737
BstH2I	RGCGCY	1 cut(s)	445
BstHHI	GCGC	1 cut(s)	444
BstKTI	GATC	8 cut(s)	13, 19, 25, 310, 625, 1004, 1555, 1923
BstMAI	GTCTC	4 cut(s)	97, 694, 836, 1836
BstMBI	GATC	8 cut(s)	10, 16, 22, 307, 622, 1001, 1552, 1920
BstMWI	GCNNNNNNNGC	8 cut(s)	68, 241, 753, 1019, 1064, 1399, 1431, 1434
BstNI	CCWGG	8 cut(s)	220, 627, 733, 759, 840, 996, 1015, 1193
BstNSI	RCATGY	2 cut(s)	235, 1711
BstSFI	CTRYAG	2 cut(s)	528, 616
BstSLI	GKGCMC	1 cut(s)	758
BstUI	CGCG	1 cut(s)	1737
BstV1I	GCAGC	6 cut(s)	216, 514, 1292, 1405, 1437, 1446
BstX2I	RGATCY	1 cut(s)	1552
BstXI	CCANNNNNNTGG	1 cut(s)	739
BstYI	RGATCY	1 cut(s)	1552
Bsu36I	CCTNAGG	1 cut(s)	923
BsuI	GTATCC	1 cut(s)	159
BsuRI	GGCC	6 cut(s)	85, 368, 756, 1200, 1505, 1769
BtsCI	GGATG	8 cut(s)	310, 946, 1359, 1416, 1462, 1471, 1534, 1954
BtsI	GCAGTG	1 cut(s)	1164
BtsIMutI	CAGTG	2 cut(s)	160, 1164
BtuMI	TCGCGA	1 cut(s)	1737
Cac8I	GCNNGC	7 cut(s)	745, 916, 955, 1020, 1416, 1423, 1767
CciI	TCATGA	1 cut(s)	1173
CfoI	GCGC	1 cut(s)	444
Cfr10I	RCCGGY	1 cut(s)	1724
Cfr13I	GGNCC	9 cut(s)	194, 366, 596, 754, 755, 763, 842, 1268, 1504
CsiI	ACCWGGT	1 cut(s)	1191
Csp6I	GTAC	6 cut(s)	95, 229, 274, 352, 815, 1806
CspAI	ACCGGT	1 cut(s)	1724
CviQI	GTAC	6 cut(s)	95, 229, 274, 352, 815, 1806
DdeI	CTNAG	9 cut(s)	293, 372, 438, 591, 923, 972, 1403, 1694, 1958
DpnI	GATC	8 cut(s)	12, 18, 24, 309, 624, 1003, 1554, 1922
DpnII	GATC	8 cut(s)	10, 16, 22, 307, 622, 1001, 1552, 1920
DraI	TTTAAA	1 cut(s)	1852
DraIII	CACNNNGTG	2 cut(s)	241, 1074
Eam1104I	CTCTTC	3 cut(s)	1081, 1641, 1935
EarI	CTCTTC	3 cut(s)	1081, 1641, 1935
EciI	GGCGGA	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	758
Eco32I	GATATC	1 cut(s)	556
Eco47I	GGWCC	5 cut(s)	194, 596, 763, 842, 1268
Eco47III	AGCGCT	1 cut(s)	443
Eco57I	CTGAAG	2 cut(s)	345, 1310
Eco81I	CCTNAGG	1 cut(s)	923
Eco88I	CYCGRG	2 cut(s)	98, 1568
EcoO109I	RGGNCCY	3 cut(s)	754, 755, 763
EcoRI	GAATTC	1 cut(s)	967
EcoRII	CCWGG	8 cut(s)	218, 625, 731, 757, 838, 994, 1013, 1191
EcoRV	GATATC	1 cut(s)	556
EcoT38I	GRGCYC	1 cut(s)	758
Esp3I	CGTCTC	1 cut(s)	1836
FalI	AAGNNNNNCTT	2 cut(s)	557, 589
FaqI	GGGAC	1 cut(s)	776
FauI	CCCGC	1 cut(s)	1011
FauNDI	CATATG	1 cut(s)	1591
FokI	GGATG	8 cut(s)	297, 953, 1366, 1423, 1458, 1469, 1541, 1961
FriOI	GRGCYC	1 cut(s)	758
FspBI	CTAG	8 cut(s)	464, 809, 1031, 1202, 1422, 1560, 1596, 1969
GlaI	GCGC	1 cut(s)	443
GsaI	CCCAGC	1 cut(s)	1821
GsuI	CTGGAG	2 cut(s)	202, 1858
HaeII	RGCGCY	1 cut(s)	445
HaeIII	GGCC	6 cut(s)	85, 368, 756, 1200, 1505, 1769
HapII	CCGG	5 cut(s)	131, 599, 825, 1142, 1725
HhaI	GCGC	1 cut(s)	444
Hin1I	GRCGYC	2 cut(s)	6, 66
Hin6I	GCGC	1 cut(s)	442
HinP1I	GCGC	1 cut(s)	442
HindIII	AAGCTT	1 cut(s)	1574
HpaII	CCGG	5 cut(s)	131, 599, 825, 1142, 1725
HphI	GGTGA	4 cut(s)	164, 1532, 1739, 1913
Hpy188I	TCNGA	8 cut(s)	77, 405, 411, 973, 985, 1290, 1750, 1876
Hpy99I	CGWCG	2 cut(s)	11, 71
HpyAV	CCTTC	5 cut(s)	82, 663, 861, 1745, 1888
HpyCH4III	ACNGT	5 cut(s)	35, 186, 908, 1487, 1810
HpyCH4IV	ACGT	2 cut(s)	6, 66
HpyF10VI	GCNNNNNNNGC	8 cut(s)	68, 241, 753, 1019, 1064, 1399, 1431, 1434
HpyF3I	CTNAG	9 cut(s)	293, 372, 438, 591, 923, 972, 1403, 1694, 1958
HpySE526I	ACGT	2 cut(s)	6, 66
Hsp92I	GRCGYC	2 cut(s)	6, 66
HspAI	GCGC	1 cut(s)	442
KflI	GGGWCCC	1 cut(s)	763
Kzo9I	GATC	8 cut(s)	10, 16, 22, 307, 622, 1001, 1552, 1920
LmnI	GCTCC	4 cut(s)	493, 985, 1079, 1814
Lsp1109I	GCAGC	6 cut(s)	216, 514, 1292, 1405, 1437, 1446
LweI	GCATC	4 cut(s)	1292, 1401, 1437, 1611
MabI	ACCWGGT	1 cut(s)	1191
MaeI	CTAG	8 cut(s)	464, 809, 1031, 1202, 1422, 1560, 1596, 1969
MaeII	ACGT	2 cut(s)	6, 66
MaeIII	GTNAC	7 cut(s)	158, 534, 990, 1183, 1520, 1562, 1901
MalI	GATC	8 cut(s)	12, 18, 24, 309, 624, 1003, 1554, 1922
MbiI	CCGCTC	1 cut(s)	371
MboI	GATC	8 cut(s)	10, 16, 22, 307, 622, 1001, 1552, 1920
MflI	RGATCY	1 cut(s)	1552
MhlI	GDGCHC	1 cut(s)	758
MlyI	GAGTC	4 cut(s)	166, 462, 542, 838
MmeI	TCCRAC	1 cut(s)	1434
MseI	TTAA	4 cut(s)	570, 1374, 1652, 1851
MspI	CCGG	5 cut(s)	131, 599, 825, 1142, 1725
MvaI	CCWGG	8 cut(s)	220, 627, 733, 759, 840, 996, 1015, 1193
MvnI	CGCG	1 cut(s)	1737
MwoI	GCNNNNNNNGC	8 cut(s)	68, 241, 753, 1019, 1064, 1399, 1431, 1434
NciI	CCSGG	2 cut(s)	826, 1142
NdeI	CATATG	1 cut(s)	1591
NdeII	GATC	8 cut(s)	10, 16, 22, 307, 622, 1001, 1552, 1920
NheI	GCTAGC	1 cut(s)	1421
NlaIV	GGNNCC	8 cut(s)	489, 597, 699, 755, 756, 764, 765, 1664
NmuCI	GTSAC	5 cut(s)	158, 534, 1183, 1520, 1901
NruI	TCGCGA	1 cut(s)	1737
NspI	RCATGY	2 cut(s)	235, 1711
NspV	TTCGAA	1 cut(s)	1933
PaeR7I	CTCGAG	1 cut(s)	1568
PagI	TCATGA	1 cut(s)	1173
PasI	CCCWGGG	2 cut(s)	732, 758
PciI	ACATGT	1 cut(s)	1707
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PfeI	GAWTC	7 cut(s)	358, 406, 455, 503, 791, 805, 944
PinAI	ACCGGT	1 cut(s)	1724
PleI	GAGTC	4 cut(s)	165, 462, 541, 837
PpsI	GAGTC	4 cut(s)	165, 462, 541, 837
PpuMI	RGGWCCY	1 cut(s)	763
PscI	ACATGT	1 cut(s)	1707
Psp5II	RGGWCCY	1 cut(s)	763
Psp6I	CCWGG	8 cut(s)	218, 625, 731, 757, 838, 994, 1013, 1191
PspFI	CCCAGC	1 cut(s)	1817
PspGI	CCWGG	8 cut(s)	218, 625, 731, 757, 838, 994, 1013, 1191
PspN4I	GGNNCC	8 cut(s)	489, 597, 699, 755, 756, 764, 765, 1664
PspOMI	GGGCCC	1 cut(s)	754
PspPI	GGNCC	9 cut(s)	194, 366, 596, 754, 755, 763, 842, 1268, 1504
PspPPI	RGGWCCY	1 cut(s)	763
PstI	CTGCAG	1 cut(s)	532
PsuI	RGATCY	1 cut(s)	1552
RruI	TCGCGA	1 cut(s)	1737
RsaI	GTAC	6 cut(s)	96, 230, 275, 353, 816, 1807
RsaNI	GTAC	6 cut(s)	95, 229, 274, 352, 815, 1806
SaqAI	TTAA	4 cut(s)	570, 1374, 1652, 1851
Sau3AI	GATC	8 cut(s)	10, 16, 22, 307, 622, 1001, 1552, 1920
Sau96I	GGNCC	9 cut(s)	194, 366, 596, 754, 755, 763, 842, 1268, 1504
SchI	GAGTC	4 cut(s)	166, 462, 542, 838
SduI	GDGCHC	1 cut(s)	758
SexAI	ACCWGGT	1 cut(s)	1191
SfaNI	GCATC	4 cut(s)	1292, 1401, 1437, 1611
SfcI	CTRYAG	2 cut(s)	528, 616
Sfr274I	CTCGAG	1 cut(s)	1568
SfuI	TTCGAA	1 cut(s)	1933
SinI	GGWCC	5 cut(s)	194, 596, 763, 842, 1268
SlaI	CTCGAG	1 cut(s)	1568
SmlI	CTYRAG	1 cut(s)	1568
SmoI	CTYRAG	1 cut(s)	1568
SsiI	CCGC	7 cut(s)	59, 62, 369, 485, 701, 1018, 1399
SspMI	CTAG	8 cut(s)	464, 809, 1031, 1202, 1422, 1560, 1596, 1969
TaaI	ACNGT	5 cut(s)	35, 186, 908, 1487, 1810
TaiI	ACGT	2 cut(s)	9, 69
TaqI	TCGA	6 cut(s)	9, 460, 1327, 1569, 1584, 1933
TatI	WGTACW	3 cut(s)	228, 814, 1805
TauI	GCSGC	4 cut(s)	62, 371, 488, 1402
TfiI	GAWTC	7 cut(s)	358, 406, 455, 503, 791, 805, 944
Tru1I	TTAA	4 cut(s)	570, 1374, 1652, 1851
Tru9I	TTAA	4 cut(s)	570, 1374, 1652, 1851
TscAI	CASTG	2 cut(s)	167, 1164
TseFI	GTSAC	5 cut(s)	158, 534, 1183, 1520, 1901
TseI	GCWGC	6 cut(s)	204, 527, 1280, 1418, 1425, 1434
Tsp45I	GTSAC	5 cut(s)	158, 534, 1183, 1520, 1901
TspDTI	ATGAA	9 cut(s)	732, 783, 875, 911, 957, 969, 1242, 1701, 1907
TspGWI	ACGGA	2 cut(s)	674, 727
TspRI	CASTG	2 cut(s)	167, 1164
VpaK11BI	GGWCC	5 cut(s)	194, 596, 763, 842, 1268
XapI	RAATTY	4 cut(s)	775, 967, 1210, 1869
XbaI	TCTAGA	1 cut(s)	808
XceI	RCATGY	2 cut(s)	235, 1711
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1021, 1514
XhoI	CTCGAG	1 cut(s)	1568
XspI	CTAG	8 cut(s)	464, 809, 1031, 1202, 1422, 1560, 1596, 1969
ZraI	GACGTC	2 cut(s)	7, 67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.