Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001660

Physical Location & Seq

Genomic Coordinates Forward (+)

5877969 .. 5878190

Gene Structure 222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1062600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGCGATGGTTCCAGAGCAACTGATATGGGAGATAGTGAAGAAGAACAACTCTTTTCTTGTGAAGGAGTTCGGGAGGAGCCACGCCGGCGTTCGGTTCACCAAGGAGCCCAACAACCTCCTCAATCTCCACTCCTACAAGCACTCTGGGTTGGCAAAACAAGAAAACCGTGACCATTCAGGGTGTGGGCAAAGATCAATCTGTGCTGTTGGCAACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28e

Protein Analysis

74

Amino Acids

8.25

Weight (kDa)

9.62

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L28e	PF01778	8 - 55	1.2e-14	Ribosomal L28e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19730 AT2G19730 AT2G19730 AT4G29410 AT4G29410
fragaria_vesca	FvH4_1g06820 FvH4_6g32910
malus_domestica	MD02G1072800.v1.1 MD07G1062600.v1.1 MD09G1196500.v1.1 MD15G1202600.v1.1
prunus_persica	Prupe.3G052900_v2.0.a1 Prupe.7G214600_v2.0.a1 Prupe.7G214600_v2.0.a1
pyrus_communis	pycom09g11360 pycom15g18000 pycom17g18620
rosa_chinensis	RchiOBHm_Chr1g0323731 RchiOBHm_Chr2g0092591 RchiOBHm_Chr2g0142381 RchiOBHm_Chr2g0160241 RchiOBHm_Chr5g0080201
rosa_laevigata	RLG00000016326 RLG00000019956
rosa_multiflora	Rmu_sc0001211.1_g000033 Rmu_sc0004296.1_g000002 Rmu_sc0020806.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102670 Rroxscaffold_2G00103250 Rroxscaffold_2G00148940
rosa_rugosa	Rorug02G0027800 Rorug02G0028000 Rorug02G0372400
rosa_samantha	Rh2AG073700 Rh2AG424200 Rh2BG074600 Rh2BG433800 Rh2BG561300 Rh2CG075700 Rh2DG072800 Rh2DG443700 Rh2DG569800 Rh5DG397100
rosa_wichuraiana	Rw0G015000 Rw2G005920 Rw2G045310 Rw5G024190 Rw7G017720 Rw7G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	93
Asp700I	GAANNNNTTC	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	91
BanII	GRGCYC	1 cut(s)	111
BglI	GCCNNNNNGGC	1 cut(s)	87
BmiI	GGNNCC	3 cut(s)	12, 80, 108
BsaJI	CCNNGG	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse118I	RCCGGY	1 cut(s)	86
BseDI	CCNNGG	1 cut(s)	102
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseRI	GAGGAG	2 cut(s)	91, 110
BsiSI	CCGG	1 cut(s)	87
BslI	CCNNNNNNNGG	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	194
BspLI	GGNNCC	3 cut(s)	12, 80, 108
BsrFI	RCCGGY	1 cut(s)	86
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	1 cut(s)	194
BssT1I	CCWWGG	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	88
BstKTI	GATC	1 cut(s)	197
BstMBI	GATC	1 cut(s)	194
BstMWI	GCNNNNNNNGC	1 cut(s)	87
BtgZI	GCGATG	1 cut(s)	20
Cac8I	GCNNGC	1 cut(s)	88
Cfr10I	RCCGGY	1 cut(s)	86
CviJI	RGCY	2 cut(s)	81, 109
CviKI_1	RGCY	2 cut(s)	81, 109
DpnI	GATC	1 cut(s)	196
DpnII	GATC	1 cut(s)	194
Eco130I	CCWWGG	1 cut(s)	102
Eco24I	GRGCYC	1 cut(s)	111
EcoT14I	CCWWGG	1 cut(s)	102
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	102
FaiI	YATR	1 cut(s)	28
FriOI	GRGCYC	1 cut(s)	111
HapII	CCGG	1 cut(s)	87
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188III	TCNNGA	2 cut(s)	14, 73
Hpy8I	GTNNAC	1 cut(s)	99
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	87
KroI	GCCGGC	1 cut(s)	86
KroNI	GCCGGC	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	194
LmnI	GCTCC	2 cut(s)	78, 106
LpnPI	CCDG	4 cut(s)	27, 100, 132, 165
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	1 cut(s)	196
MboI	GATC	1 cut(s)	194
MboII	GAAGA	2 cut(s)	52, 55
MhlI	GDGCHC	1 cut(s)	111
MnlI	CCTC	3 cut(s)	69, 128, 131
MreI	CGCCGGCG	1 cut(s)	86
MroNI	GCCGGC	1 cut(s)	86
MroXI	GAANNNNTTC	1 cut(s)	68
MspI	CCGG	1 cut(s)	87
MwoI	GCNNNNNNNGC	1 cut(s)	87
NaeI	GCCGGC	1 cut(s)	88
NdeII	GATC	1 cut(s)	194
NgoMIV	GCCGGC	1 cut(s)	86
NlaIV	GGNNCC	3 cut(s)	12, 80, 108
NmuCI	GTSAC	1 cut(s)	170
PdiI	GCCGGC	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	68
PspN4I	GGNNCC	3 cut(s)	12, 80, 108
Sau3AI	GATC	1 cut(s)	194
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	1 cut(s)	120
SgrAI	CRCCGGYG	1 cut(s)	86
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	170
TseFI	GTSAC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	170
XcmI	CCANNNNNNNNNTGG	1 cut(s)	182
XmnI	GAANNNNTTC	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.