Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001660

Physical Location & Seq

Genomic Coordinates Forward (+)

19463853 .. 19465803

Gene Structure 1951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G214600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCTACCGTTCCAGGACAATTGATCTGGGAGGTCGTGAAGAAGAACAACTCCTTCTTGGTGAAGCAGTTCGGCCGAGGCAACGCTGGCGTCCGATTCAGCAAGGAGCCCAACAACCTCTACAACCTCCACTCCTACAAGCATTCTGGCTTGGCGAACAAGAAGACGGTGACTATTCAGCCCGGAGGCAAAGACCATTCTGTGGTGCTCGCCACCACTAAGACGAAGAAGCAGAACAAGCCTGCCAGTTTGCTTCACAAGTCTGTGATCAGGAAGGAGTTTCCTCGTGTGGCCAAGGCTGTTATCAATCAGGTGGCGGATAATTTCTATAGACCCGATTTGAAGAAAGCAGCCCTTGCCAGGCTTAGTGTTGTTCACAGGAGTCTCAAGGTCTCCAAGTCTGGTGTCAAGAAGAGGAATAGGCAGGCTGTCAAGACCCCTGGTAGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28e

Protein Analysis

151

Amino Acids

16.72

Weight (kDa)

11.23

Isoelectric Point (pI)

26.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19730 AT2G19730 AT2G19730 AT4G29410 AT4G29410
fragaria_vesca	FvH4_1g06820 FvH4_6g32910
malus_domestica	MD02G1072800.v1.1 MD07G1062600.v1.1 MD09G1196500.v1.1 MD15G1202600.v1.1
prunus_persica	Prupe.3G052900_v2.0.a1 Prupe.7G214600_v2.0.a1 Prupe.7G214600_v2.0.a1
pyrus_communis	pycom09g11360 pycom15g18000 pycom17g18620
rosa_chinensis	RchiOBHm_Chr1g0323731 RchiOBHm_Chr2g0092591 RchiOBHm_Chr2g0142381 RchiOBHm_Chr2g0160241 RchiOBHm_Chr5g0080201
rosa_laevigata	RLG00000016326 RLG00000019956
rosa_multiflora	Rmu_sc0001211.1_g000033 Rmu_sc0004296.1_g000002 Rmu_sc0020806.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102670 Rroxscaffold_2G00103250 Rroxscaffold_2G00148940
rosa_rugosa	Rorug02G0027800 Rorug02G0028000 Rorug02G0372400
rosa_samantha	Rh2AG073700 Rh2AG424200 Rh2BG074600 Rh2BG433800 Rh2BG561300 Rh2CG075700 Rh2DG072800 Rh2DG443700 Rh2DG569800 Rh5DG397100
rosa_wichuraiana	Rw0G015000 Rw2G005920 Rw2G045310 Rw5G024190 Rw7G017720 Rw7G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	202
AciI	CCGC	1 cut(s)	317
AcoI	YGGCCR	2 cut(s)	73, 291
AcyI	GRCGYC	1 cut(s)	90
AfiI	CCNNNNNNNGG	3 cut(s)	202, 360, 444
AgsI	TTSAA	1 cut(s)	343
AjnI	CCWGG	3 cut(s)	13, 359, 439
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	2 cut(s)	389, 397
AoxI	GGCC	2 cut(s)	73, 291
ApeKI	GCWGC	1 cut(s)	350
Asp700I	GAANNNNTTC	1 cut(s)	68
AsuC2I	CCSGG	1 cut(s)	183
AsuHPI	GGTGA	2 cut(s)	73, 181
BalI	TGGCCA	1 cut(s)	293
BanII	GRGCYC	1 cut(s)	111
BauI	CACGAG	1 cut(s)	285
BbsI	GAAGAC	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	362
BciT130I	CCWGG	3 cut(s)	15, 361, 441
BclI	TGATCA	1 cut(s)	267
BcnI	CCSGG	1 cut(s)	183
BcoDI	GTCTC	2 cut(s)	389, 397
BfmI	CTRYAG	1 cut(s)	328
BisI	GCNGC	1 cut(s)	351
BlsI	GCNGC	1 cut(s)	352
Bme1390I	CCNGG	4 cut(s)	15, 183, 361, 441
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	4 cut(s)	15, 183, 361, 441
BpiI	GAAGAC	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	371
BpuMI	CCSGG	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	90
BsaI	GGTCTC	1 cut(s)	397
BsaJI	CCNNGG	3 cut(s)	76, 294, 439
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 360, 444
Bse1I	ACTGG	1 cut(s)	246
BseBI	CCWGG	3 cut(s)	15, 361, 441
BseDI	CCNNGG	3 cut(s)	76, 294, 439
BseLI	CCNNNNNNNGG	3 cut(s)	202, 360, 444
BseNI	ACTGG	1 cut(s)	246
BseX3I	CGGCCG	1 cut(s)	73
BseXI	GCAGC	1 cut(s)	362
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	2 cut(s)	75, 293
BsiEI	CGRYCG	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	183
BslI	CCNNNNNNNGG	3 cut(s)	202, 360, 444
BsmAI	GTCTC	2 cut(s)	389, 397
BsmI	GAATGC	1 cut(s)	142
BsnI	GGCC	2 cut(s)	75, 293
Bso31I	GGTCTC	1 cut(s)	397
Bsp1286I	GDGCHC	2 cut(s)	111, 210
Bsp143I	GATC	2 cut(s)	24, 267
BspACI	CCGC	1 cut(s)	317
BspANI	GGCC	2 cut(s)	75, 293
BspLI	GGNNCC	1 cut(s)	108
BspTNI	GGTCTC	1 cut(s)	397
BsrI	ACTGG	1 cut(s)	246
BssECI	CCNNGG	3 cut(s)	76, 294, 439
BssMI	GATC	2 cut(s)	24, 267
BssNI	GRCGYC	1 cut(s)	90
BssSI	CACGAG	1 cut(s)	285
BssT1I	CCWWGG	1 cut(s)	294
Bst2BI	CACGAG	1 cut(s)	285
Bst2UI	CCWGG	3 cut(s)	15, 361, 441
Bst4CI	ACNGT	2 cut(s)	10, 169
Bst6I	CTCTTC	1 cut(s)	407
BstACI	GRCGYC	1 cut(s)	90
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstC8I	GCNNGC	4 cut(s)	88, 210, 243, 426
BstDEI	CTNAG	2 cut(s)	219, 365
BstKTI	GATC	2 cut(s)	27, 270
BstMAI	GTCTC	2 cut(s)	389, 397
BstMBI	GATC	2 cut(s)	24, 267
BstMCI	CGRYCG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 238, 356
BstNI	CCWGG	3 cut(s)	15, 361, 441
BstSCI	CCNGG	4 cut(s)	13, 181, 359, 439
BstSFI	CTRYAG	1 cut(s)	328
BstV1I	GCAGC	1 cut(s)	362
BstV2I	GAAGAC	1 cut(s)	170
BstZI	CGGCCG	1 cut(s)	73
BsuRI	GGCC	2 cut(s)	75, 293
Cac8I	GCNNGC	4 cut(s)	88, 210, 243, 426
CseI	GACGC	1 cut(s)	79
DdeI	CTNAG	2 cut(s)	219, 365
DpnI	GATC	2 cut(s)	26, 269
DpnII	GATC	2 cut(s)	24, 267
EaeI	YGGCCR	2 cut(s)	73, 291
EagI	CGGCCG	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	407
EciI	GGCGGA	1 cut(s)	332
EclXI	CGGCCG	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	294
Eco24I	GRGCYC	1 cut(s)	111
Eco31I	GGTCTC	1 cut(s)	397
Eco52I	CGGCCG	1 cut(s)	73
EcoRII	CCWGG	3 cut(s)	13, 359, 439
EcoT14I	CCWWGG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	294
FaiI	YATR	1 cut(s)	330
FalI	AAGNNNNNCTT	2 cut(s)	339, 371
FbaI	TGATCA	1 cut(s)	267
Fnu4HI	GCNGC	1 cut(s)	351
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	351
GluI	GCNGC	1 cut(s)	351
HaeIII	GGCC	2 cut(s)	75, 293
HapII	CCGG	1 cut(s)	183
HgaI	GACGC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	90
HinfI	GANTC	2 cut(s)	96, 382
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	2 cut(s)	73, 181
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	1 cut(s)	95
Hpy188III	TCNNGA	4 cut(s)	37, 271, 409, 433
Hpy8I	GTNNAC	1 cut(s)	376
HpyAV	CCTTC	2 cut(s)	64, 268
HpyCH4III	ACNGT	2 cut(s)	10, 169
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 238, 356
HpyF3I	CTNAG	2 cut(s)	219, 365
Hsp92I	GRCGYC	1 cut(s)	90
Ksp22I	TGATCA	1 cut(s)	267
Kzo9I	GATC	2 cut(s)	24, 267
LmnI	GCTCC	1 cut(s)	106
Lsp1109I	GCAGC	1 cut(s)	362
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	2 cut(s)	26, 269
MboI	GATC	2 cut(s)	24, 267
MboII	GAAGA	6 cut(s)	52, 55, 175, 238, 355, 424
MfeI	CAATTG	1 cut(s)	20
MhlI	GDGCHC	2 cut(s)	111, 210
MlsI	TGGCCA	1 cut(s)	293
MluCI	AATT	2 cut(s)	20, 322
MluNI	TGGCCA	1 cut(s)	293
MlyI	GAGTC	1 cut(s)	391
MnlI	CCTC	7 cut(s)	25, 71, 128, 137, 179, 294, 408
Mox20I	TGGCCA	1 cut(s)	293
MroXI	GAANNNNTTC	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	293
Msp20I	TGGCCA	1 cut(s)	293
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	4 cut(s)	15, 183, 361, 441
MunI	CAATTG	1 cut(s)	20
Mva1269I	GAATGC	1 cut(s)	142
MvaI	CCWGG	3 cut(s)	15, 361, 441
MwoI	GCNNNNNNNGC	3 cut(s)	87, 238, 356
NciI	CCSGG	1 cut(s)	183
NdeII	GATC	2 cut(s)	24, 267
NlaIV	GGNNCC	1 cut(s)	108
NmeAIII	GCCGAG	1 cut(s)	101
NmuCI	GTSAC	1 cut(s)	169
PctI	GAATGC	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	96
PflMI	CCANNNNNTGG	1 cut(s)	202
PfoI	TCCNGGA	1 cut(s)	13
PkrI	GCNGC	1 cut(s)	352
PleI	GAGTC	1 cut(s)	390
PpsI	GAGTC	1 cut(s)	390
Psp6I	CCWGG	3 cut(s)	13, 359, 439
PspGI	CCWGG	3 cut(s)	13, 359, 439
PspN4I	GGNNCC	1 cut(s)	108
SatI	GCNGC	1 cut(s)	351
Sau3AI	GATC	2 cut(s)	24, 267
SchI	GAGTC	1 cut(s)	391
ScrFI	CCNGG	4 cut(s)	15, 183, 361, 441
SduI	GDGCHC	2 cut(s)	111, 210
SetI	ASST	5 cut(s)	36, 120, 129, 315, 393
SfcI	CTRYAG	1 cut(s)	328
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	2 cut(s)	20, 322
SsiI	CCGC	1 cut(s)	317
StyD4I	CCNGG	4 cut(s)	13, 181, 359, 439
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	10, 169
TasI	AATT	2 cut(s)	20, 322
TfiI	GAWTC	1 cut(s)	96
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	169
Van91I	CCANNNNNTGG	1 cut(s)	202
XmnI	GAANNNNTTC	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.