Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001660

Physical Location & Seq

Genomic Coordinates Reverse (-)

14468205 .. 14470197

Gene Structure 1993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G29410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCCACAGTTCCAGGACAGTTGATCTGGGAGATCGTGAAGAGAAACAACTGTTTCTTGGTGAAGCAATTCGGTAGAGGTAATGCCAAGGTTCAGTTCAGCAAAGAGAGCAACAACCTCGTCAACATCAACTCGTACAAGCACTCTGGTTTGGCCAACAAAAAGACAGTGACCATTCAGGCGGCTGGCAAGGACCAAGGTGTTGTACTCGGAACCACCAAGACTAAGAGACAAAACAAGCCTAAGCTCTCTGTTAACAAGTCTATCCTCAAGAAGGAGTTCTCGAGGATGAGTAAAGTTGTTGCCAATCAGGTAGTGGACAACTACTACAGGCCTGATTTGAAGAAAGCAGCACTTGCTAGGCTTAGCGCTATCAGCAAAGGTCTTAGAGTAGCCAAGTCGGGTCCCAAGAGGAGAAACAGACAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28e

Protein Analysis

143

Amino Acids

15.91

Weight (kDa)

11.04

Isoelectric Point (pI)

35.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L28e	PF01778	8 - 126	1.7e-35	Ribosomal L28e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19730 AT2G19730 AT2G19730 AT4G29410 AT4G29410
fragaria_vesca	FvH4_1g06820 FvH4_6g32910
malus_domestica	MD02G1072800.v1.1 MD07G1062600.v1.1 MD09G1196500.v1.1 MD15G1202600.v1.1
prunus_persica	Prupe.3G052900_v2.0.a1 Prupe.7G214600_v2.0.a1 Prupe.7G214600_v2.0.a1
pyrus_communis	pycom09g11360 pycom15g18000 pycom17g18620
rosa_chinensis	RchiOBHm_Chr1g0323731 RchiOBHm_Chr2g0092591 RchiOBHm_Chr2g0142381 RchiOBHm_Chr2g0160241 RchiOBHm_Chr5g0080201
rosa_laevigata	RLG00000016326 RLG00000019956
rosa_multiflora	Rmu_sc0001211.1_g000033 Rmu_sc0004296.1_g000002 Rmu_sc0020806.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102670 Rroxscaffold_2G00103250 Rroxscaffold_2G00148940
rosa_rugosa	Rorug02G0027800 Rorug02G0028000 Rorug02G0372400
rosa_samantha	Rh2AG073700 Rh2AG424200 Rh2BG074600 Rh2BG433800 Rh2BG561300 Rh2CG075700 Rh2DG072800 Rh2DG443700 Rh2DG569800 Rh5DG397100
rosa_wichuraiana	Rw0G015000 Rw2G005920 Rw2G045310 Rw5G024190 Rw7G017720 Rw7G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	182
AcoI	YGGCCR	2 cut(s)	3, 153
AfaI	GTAC	2 cut(s)	137, 207
AfeI	AGCGCT	1 cut(s)	370
AfiI	CCNNNNNNNGG	1 cut(s)	274
AgsI	TTSAA	1 cut(s)	343
AjnI	CCWGG	1 cut(s)	13
AjuI	GAANNNNNNNTTGG	2 cut(s)	80, 112
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
Alw26I	GTCTC	1 cut(s)	223
Ama87I	CYCGRG	1 cut(s)	283
Aor51HI	AGCGCT	1 cut(s)	370
AoxI	GGCC	3 cut(s)	3, 153, 332
ApeKI	GCWGC	1 cut(s)	350
Asp700I	GAANNNNTTC	2 cut(s)	68, 278
AspLEI	GCGC	1 cut(s)	371
AspS9I	GGNCC	2 cut(s)	193, 404
AsuHPI	GGTGA	1 cut(s)	73
AvaI	CYCGRG	1 cut(s)	283
AvaII	GGWCC	2 cut(s)	193, 404
BalI	TGGCCA	2 cut(s)	5, 155
BbvI	GCAGC	1 cut(s)	362
BcgI	CGANNNNNNTGC	2 cut(s)	100, 134
BciT130I	CCWGG	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	1 cut(s)	360
BfmI	CTRYAG	1 cut(s)	328
BfoI	RGCGCY	1 cut(s)	372
BisI	GCNGC	2 cut(s)	183, 351
BlpI	GCTNAGC	1 cut(s)	365
BlsI	GCNGC	2 cut(s)	184, 352
Bme1390I	CCNGG	1 cut(s)	15
Bme18I	GGWCC	2 cut(s)	193, 404
BmeT110I	CYCGRG	1 cut(s)	283
BmgT120I	GGNCC	2 cut(s)	193, 404
BmiI	GGNNCC	3 cut(s)	214, 405, 406
BmrFI	CCNGG	1 cut(s)	15
Bpu10I	CCTNAGC	1 cut(s)	243
Bpu1102I	GCTNAGC	1 cut(s)	365
BpuEI	CTTGAG	1 cut(s)	254
BsaJI	CCNNGG	2 cut(s)	87, 196
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	2 cut(s)	87, 196
BseGI	GGATG	1 cut(s)	294
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseRI	GAGGAG	1 cut(s)	427
BseXI	GCAGC	1 cut(s)	362
BshFI	GGCC	3 cut(s)	5, 155, 334
BsiHKCI	CYCGRG	1 cut(s)	283
BslFI	GGGAC	1 cut(s)	390
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmAI	GTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	390
BsnI	GGCC	3 cut(s)	5, 155, 334
BsoBI	CYCGRG	1 cut(s)	283
Bsp143I	GATC	2 cut(s)	24, 33
Bsp1720I	GCTNAGC	1 cut(s)	365
BspACI	CCGC	1 cut(s)	182
BspANI	GGCC	3 cut(s)	5, 155, 334
BspLI	GGNNCC	3 cut(s)	214, 405, 406
BssECI	CCNNGG	2 cut(s)	87, 196
BssMI	GATC	2 cut(s)	24, 33
BssT1I	CCWWGG	2 cut(s)	87, 196
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	4 cut(s)	10, 21, 53, 169
Bst6I	CTCTTC	1 cut(s)	35
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	4 cut(s)	225, 243, 365, 386
BstENI	CCTNNNNNAGG	1 cut(s)	272
BstF5I	GGATG	1 cut(s)	294
BstH2I	RGCGCY	1 cut(s)	372
BstHHI	GCGC	1 cut(s)	371
BstKTI	GATC	2 cut(s)	27, 36
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	2 cut(s)	24, 33
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 356, 375
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BstSFI	CTRYAG	1 cut(s)	328
BstV1I	GCAGC	1 cut(s)	362
BsuRI	GGCC	3 cut(s)	5, 155, 334
BtsCI	GGATG	1 cut(s)	294
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	187
CfoI	GCGC	1 cut(s)	371
Cfr13I	GGNCC	2 cut(s)	193, 404
Csp6I	GTAC	2 cut(s)	136, 206
CviJI	RGCY	9 cut(s)	5, 155, 185, 241, 247, 334, 364, 395, 428
CviKI_1	RGCY	9 cut(s)	5, 155, 185, 241, 247, 334, 364, 395, 428
CviQI	GTAC	2 cut(s)	136, 206
DdeI	CTNAG	4 cut(s)	225, 243, 365, 386
DpnI	GATC	2 cut(s)	26, 35
DpnII	GATC	2 cut(s)	24, 33
EaeI	YGGCCR	2 cut(s)	3, 153
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco130I	CCWWGG	2 cut(s)	87, 196
Eco147I	AGGCCT	1 cut(s)	334
Eco47I	GGWCC	2 cut(s)	193, 404
Eco47III	AGCGCT	1 cut(s)	370
Eco88I	CYCGRG	1 cut(s)	283
EcoNI	CCTNNNNNAGG	1 cut(s)	272
EcoO109I	RGGNCCY	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	13
EcoT14I	CCWWGG	2 cut(s)	87, 196
ErhI	CCWWGG	2 cut(s)	87, 196
FalI	AAGNNNNNCTT	2 cut(s)	339, 371
FaqI	GGGAC	1 cut(s)	390
Fnu4HI	GCNGC	2 cut(s)	183, 351
FokI	GGATG	1 cut(s)	301
Fsp4HI	GCNGC	2 cut(s)	183, 351
FspBI	CTAG	1 cut(s)	360
GlaI	GCGC	1 cut(s)	370
GluI	GCNGC	2 cut(s)	183, 351
HaeII	RGCGCY	1 cut(s)	372
HaeIII	GGCC	3 cut(s)	5, 155, 334
HhaI	GCGC	1 cut(s)	371
Hin6I	GCGC	1 cut(s)	369
HinP1I	GCGC	1 cut(s)	369
HincII	GTYRAC	2 cut(s)	124, 256
HindII	GTYRAC	2 cut(s)	124, 256
HpaI	GTTAAC	1 cut(s)	256
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	3 cut(s)	124, 256, 319
Hpy188I	TCNGA	1 cut(s)	212
Hpy188III	TCNNGA	3 cut(s)	37, 271, 283
Hpy8I	GTNNAC	3 cut(s)	124, 256, 319
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	4 cut(s)	10, 21, 53, 169
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 356, 375
HpyF3I	CTNAG	4 cut(s)	225, 243, 365, 386
HspAI	GCGC	1 cut(s)	369
KflI	GGGWCCC	1 cut(s)	404
KspAI	GTTAAC	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	24, 33
LpnPI	CCDG	9 cut(s)	13, 27, 132, 164, 171, 296, 316, 348, 410
Lsp1109I	GCAGC	1 cut(s)	362
MaeI	CTAG	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	2 cut(s)	26, 35
MboI	GATC	2 cut(s)	24, 33
MboII	GAAGA	2 cut(s)	52, 355
MlsI	TGGCCA	2 cut(s)	5, 155
MluCI	AATT	1 cut(s)	68
MluNI	TGGCCA	2 cut(s)	5, 155
MnlI	CCTC	5 cut(s)	71, 128, 278, 279, 405
Mox20I	TGGCCA	2 cut(s)	5, 155
MroXI	GAANNNNTTC	2 cut(s)	68, 278
MscI	TGGCCA	2 cut(s)	5, 155
MseI	TTAA	1 cut(s)	255
Msp20I	TGGCCA	2 cut(s)	5, 155
MspR9I	CCNGG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	3 cut(s)	108, 356, 375
NdeII	GATC	2 cut(s)	24, 33
NlaIV	GGNNCC	3 cut(s)	214, 405, 406
NmuCI	GTSAC	1 cut(s)	169
PaeR7I	CTCGAG	1 cut(s)	283
PceI	AGGCCT	1 cut(s)	334
PdmI	GAANNNNTTC	2 cut(s)	68, 278
PfoI	TCCNGGA	1 cut(s)	13
PkrI	GCNGC	2 cut(s)	184, 352
PpuMI	RGGWCCY	1 cut(s)	404
Psp5II	RGGWCCY	1 cut(s)	404
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	3 cut(s)	214, 405, 406
PspPI	GGNCC	2 cut(s)	193, 404
PspPPI	RGGWCCY	1 cut(s)	404
RsaI	GTAC	2 cut(s)	137, 207
RsaNI	GTAC	2 cut(s)	136, 206
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	2 cut(s)	183, 351
Sau3AI	GATC	2 cut(s)	24, 33
Sau96I	GGNCC	2 cut(s)	193, 404
ScrFI	CCNGG	1 cut(s)	15
SetI	ASST	7 cut(s)	82, 93, 120, 202, 249, 315, 385
SfcI	CTRYAG	1 cut(s)	328
Sfr274I	CTCGAG	1 cut(s)	283
SinI	GGWCC	2 cut(s)	193, 404
SlaI	CTCGAG	1 cut(s)	283
SmlI	CTYRAG	2 cut(s)	269, 283
SmoI	CTYRAG	2 cut(s)	269, 283
Sse9I	AATT	1 cut(s)	68
SseBI	AGGCCT	1 cut(s)	334
SsiI	CCGC	1 cut(s)	182
SspMI	CTAG	1 cut(s)	360
StuI	AGGCCT	1 cut(s)	334
StyD4I	CCNGG	1 cut(s)	13
StyI	CCWWGG	2 cut(s)	87, 196
TaaI	ACNGT	4 cut(s)	10, 21, 53, 169
TaqI	TCGA	1 cut(s)	284
TasI	AATT	1 cut(s)	68
TatI	WGTACW	1 cut(s)	205
TauI	GCSGC	1 cut(s)	185
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	1 cut(s)	174
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	169
TspRI	CASTG	1 cut(s)	174
VpaK11BI	GGWCC	2 cut(s)	193, 404
XagI	CCTNNNNNAGG	1 cut(s)	272
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XhoI	CTCGAG	1 cut(s)	283
XmnI	GAANNNNTTC	2 cut(s)	68, 278
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.