Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001660

Physical Location & Seq

Genomic Coordinates Forward (+)

9612260 .. 9613616

Gene Structure 1357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g11360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCGACGGTTCCAGGGCAACTGATATGGGAGATAGTGAAGAAGAACAACTCTTTTCTTGTGAAGGAGTTCGGGAGGAGCCACGCCGGCGTTCGGTTCACCAAGGAGCCCAACAACCTCCTTAATCTCCACTCCTACAAGCACTCTGGGTTGGCAAACAAGAAAACCGTGACCATTCAGGGTGTGGGCAAAGATCAATCTGTGTTGCTGGCAACAAGTAAGACCAAGAAGCAGAACAAGCCTGCTGCTCTGCTGCATAAGTCTGTGATGAAGCAGGAGTTCCGCAGGATGGCGAAGGCGGTCGTGAATCAGGTGGCGAATAACCATTACAGGCCGGATCTGAAAAAAGCAGCCCTTGCAAGGTTGAGTGCTGTTCACAAGAGCCTCAAGATTGCCAAGTCTGGTGTCAAGAAGAGGAACAGGCAAGCTGTTAGAGTCTATGGCAGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28e

Protein Analysis

151

Amino Acids

16.82

Weight (kDa)

11.23

Isoelectric Point (pI)

36.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L28e	PF01778	8 - 128	2.4e-36	Ribosomal L28e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19730 AT2G19730 AT2G19730 AT4G29410 AT4G29410
fragaria_vesca	FvH4_1g06820 FvH4_6g32910
malus_domestica	MD02G1072800.v1.1 MD07G1062600.v1.1 MD09G1196500.v1.1 MD15G1202600.v1.1
prunus_persica	Prupe.3G052900_v2.0.a1 Prupe.7G214600_v2.0.a1 Prupe.7G214600_v2.0.a1
pyrus_communis	pycom09g11360 pycom15g18000 pycom17g18620
rosa_chinensis	RchiOBHm_Chr1g0323731 RchiOBHm_Chr2g0092591 RchiOBHm_Chr2g0142381 RchiOBHm_Chr2g0160241 RchiOBHm_Chr5g0080201
rosa_laevigata	RLG00000016326 RLG00000019956
rosa_multiflora	Rmu_sc0001211.1_g000033 Rmu_sc0004296.1_g000002 Rmu_sc0020806.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102670 Rroxscaffold_2G00103250 Rroxscaffold_2G00148940
rosa_rugosa	Rorug02G0027800 Rorug02G0028000 Rorug02G0372400
rosa_samantha	Rh2AG073700 Rh2AG424200 Rh2BG074600 Rh2BG433800 Rh2BG561300 Rh2CG075700 Rh2DG072800 Rh2DG443700 Rh2DG569800 Rh5DG397100
rosa_wichuraiana	Rw0G015000 Rw2G005920 Rw2G045310 Rw5G024190 Rw7G017720 Rw7G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	283, 299
AclWI	GGATC	1 cut(s)	345
AfiI	CCNNNNNNNGG	3 cut(s)	93, 289, 360
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	1 cut(s)	428
AluI	AGCT	1 cut(s)	428
AlwI	GGATC	1 cut(s)	345
AoxI	GGCC	1 cut(s)	332
ApeKI	GCWGC	3 cut(s)	245, 253, 350
Asp700I	GAANNNNTTC	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	91
BanII	GRGCYC	1 cut(s)	111
BbvI	GCAGC	3 cut(s)	232, 240, 362
BccI	CCATC	1 cut(s)	283
BciT130I	CCWGG	1 cut(s)	15
BglI	GCCNNNNNGGC	1 cut(s)	87
BisI	GCNGC	3 cut(s)	246, 254, 351
BlsI	GCNGC	3 cut(s)	247, 255, 352
Bme1390I	CCNGG	1 cut(s)	15
BmiI	GGNNCC	3 cut(s)	12, 80, 108
BmrFI	CCNGG	1 cut(s)	15
BpuEI	CTTGAG	1 cut(s)	371
BsaJI	CCNNGG	2 cut(s)	14, 102
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 289, 360
Bse118I	RCCGGY	1 cut(s)	86
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	2 cut(s)	14, 102
BseGI	GGATG	1 cut(s)	294
BseLI	CCNNNNNNNGG	3 cut(s)	93, 289, 360
BseRI	GAGGAG	1 cut(s)	91
BseXI	GCAGC	3 cut(s)	232, 240, 362
Bsh1285I	CGRYCG	1 cut(s)	303
BshFI	GGCC	1 cut(s)	334
BsiEI	CGRYCG	1 cut(s)	303
BsiSI	CCGG	2 cut(s)	87, 335
BslI	CCNNNNNNNGG	3 cut(s)	93, 289, 360
BsnI	GGCC	1 cut(s)	334
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	193, 337
BspACI	CCGC	2 cut(s)	283, 299
BspANI	GGCC	1 cut(s)	334
BspLI	GGNNCC	3 cut(s)	12, 80, 108
BspPI	GGATC	1 cut(s)	345
BsrFI	RCCGGY	1 cut(s)	86
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	2 cut(s)	14, 102
BssMI	GATC	2 cut(s)	193, 337
BssT1I	CCWWGG	1 cut(s)	102
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	2 cut(s)	10, 169
Bst6I	CTCTTC	1 cut(s)	407
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstC8I	GCNNGC	4 cut(s)	88, 210, 243, 426
BstF5I	GGATG	1 cut(s)	294
BstKTI	GATC	2 cut(s)	196, 340
BstMBI	GATC	2 cut(s)	193, 337
BstMCI	CGRYCG	1 cut(s)	303
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 238, 356
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BstV1I	GCAGC	3 cut(s)	232, 240, 362
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BsuRI	GGCC	1 cut(s)	334
BtsCI	GGATG	1 cut(s)	294
Cac8I	GCNNGC	4 cut(s)	88, 210, 243, 426
Cfr10I	RCCGGY	1 cut(s)	86
CviJI	RGCY	7 cut(s)	81, 109, 241, 334, 353, 384, 428
CviKI_1	RGCY	7 cut(s)	81, 109, 241, 334, 353, 384, 428
DpnI	GATC	2 cut(s)	195, 339
DpnII	GATC	2 cut(s)	193, 337
Eam1104I	CTCTTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	407
Eco130I	CCWWGG	1 cut(s)	102
Eco24I	GRGCYC	1 cut(s)	111
EcoRII	CCWGG	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	102
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	102
FaiI	YATR	3 cut(s)	28, 258, 441
FalI	AAGNNNNNCTT	2 cut(s)	339, 371
Fnu4HI	GCNGC	3 cut(s)	246, 254, 351
FokI	GGATG	1 cut(s)	301
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	3 cut(s)	246, 254, 351
GluI	GCNGC	3 cut(s)	246, 254, 351
HaeIII	GGCC	1 cut(s)	334
HapII	CCGG	2 cut(s)	87, 335
HinfI	GANTC	2 cut(s)	307, 435
HpaII	CCGG	2 cut(s)	87, 335
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	2 cut(s)	99, 376
Hpy188I	TCNGA	1 cut(s)	342
Hpy188III	TCNNGA	4 cut(s)	73, 304, 388, 409
Hpy8I	GTNNAC	2 cut(s)	99, 376
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	58, 289
HpyCH4III	ACNGT	2 cut(s)	10, 169
HpyCH4V	TGCA	2 cut(s)	256, 359
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 238, 356
KroI	GCCGGC	1 cut(s)	86
KroNI	GCCGGC	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	193, 337
LmnI	GCTCC	2 cut(s)	78, 106
Lsp1109I	GCAGC	3 cut(s)	232, 240, 362
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	2 cut(s)	195, 339
MboI	GATC	2 cut(s)	193, 337
MboII	GAAGA	3 cut(s)	52, 55, 424
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	1 cut(s)	111
MlyI	GAGTC	1 cut(s)	444
MnlI	CCTC	4 cut(s)	69, 128, 395, 408
MreI	CGCCGGCG	1 cut(s)	86
MroNI	GCCGGC	1 cut(s)	86
MroXI	GAANNNNTTC	1 cut(s)	68
MseI	TTAA	1 cut(s)	123
MspI	CCGG	2 cut(s)	87, 335
MspR9I	CCNGG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	3 cut(s)	87, 238, 356
NaeI	GCCGGC	1 cut(s)	88
NdeII	GATC	2 cut(s)	193, 337
NgoMIV	GCCGGC	1 cut(s)	86
NlaIV	GGNNCC	3 cut(s)	12, 80, 108
NmuCI	GTSAC	1 cut(s)	169
PdiI	GCCGGC	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	307
PkrI	GCNGC	3 cut(s)	247, 255, 352
PleI	GAGTC	1 cut(s)	443
PpsI	GAGTC	1 cut(s)	443
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	3 cut(s)	12, 80, 108
PsuI	RGATCY	1 cut(s)	337
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	3 cut(s)	246, 254, 351
Sau3AI	GATC	2 cut(s)	193, 337
SchI	GAGTC	1 cut(s)	444
ScrFI	CCNGG	1 cut(s)	15
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	4 cut(s)	120, 315, 365, 430
SgrAI	CRCCGGYG	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
SsiI	CCGC	2 cut(s)	283, 299
StyD4I	CCNGG	1 cut(s)	13
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	2 cut(s)	10, 169
TfiI	GAWTC	1 cut(s)	307
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	3 cut(s)	245, 253, 350
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	1 cut(s)	284
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181
XmnI	GAANNNNTTC	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.