Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001660

Physical Location & Seq

Genomic Coordinates Reverse (-)

6167297 .. 6168965

Gene Structure 1669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG073700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCCACCGTTCCAGGGCAGCTGATCTGGGAGATCGTCAAGAAGAACAACTCCTTCTTGGTCAAGCAGTTCGGCCGGAGCCACGCCGGCGTCCGCTTCAGCAAGGAGCCTAACAACCTCTGCAACCTCCACTCCTACAAGCACTCCGGTTTGGCGAACAAGAAGACTGTGAGTATTCAGCCCGGAGGCAAAGACCAGTCGGTAGTGCTCGCCACCACTAAGACCAGGAAGCAGAACAAGCCGGCCAGTCTGGTTCACAAGTCTGTCATGAGGAAGGAGTTTCCTCGCATGGCCAAGGCTGTTACCAATCAGGTGGTTGATAACTTTTACCGGCCAGATTTGAAGAAAGCAGCCCTTGCTAGGCTCAGTGTGGTTTACAGGAGTCTCAAGGTGTCAAAATCTGGTGCCAAGAAGAGGAATAGGCAGGCTGTTAGAATGTACGGAAGGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28e

Protein Analysis

150

Amino Acids

16.91

Weight (kDa)

11.17

Isoelectric Point (pI)

33.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L28e	PF01778	8 - 128	7.1e-36	Ribosomal L28e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19730 AT2G19730 AT2G19730 AT4G29410 AT4G29410
fragaria_vesca	FvH4_1g06820 FvH4_6g32910
malus_domestica	MD02G1072800.v1.1 MD07G1062600.v1.1 MD09G1196500.v1.1 MD15G1202600.v1.1
prunus_persica	Prupe.3G052900_v2.0.a1 Prupe.7G214600_v2.0.a1 Prupe.7G214600_v2.0.a1
pyrus_communis	pycom09g11360 pycom15g18000 pycom17g18620
rosa_chinensis	RchiOBHm_Chr1g0323731 RchiOBHm_Chr2g0092591 RchiOBHm_Chr2g0142381 RchiOBHm_Chr2g0160241 RchiOBHm_Chr5g0080201
rosa_laevigata	RLG00000016326 RLG00000019956
rosa_multiflora	Rmu_sc0001211.1_g000033 Rmu_sc0004296.1_g000002 Rmu_sc0020806.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102670 Rroxscaffold_2G00103250 Rroxscaffold_2G00148940
rosa_rugosa	Rorug02G0027800 Rorug02G0028000 Rorug02G0372400
rosa_samantha	Rh2AG073700 Rh2AG424200 Rh2BG074600 Rh2BG433800 Rh2BG561300 Rh2CG075700 Rh2DG072800 Rh2DG443700 Rh2DG569800 Rh5DG397100
rosa_wichuraiana	Rw0G015000 Rw2G005920 Rw2G045310 Rw5G024190 Rw7G017720 Rw7G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	404
AciI	CCGC	1 cut(s)	94
AcoI	YGGCCR	5 cut(s)	3, 73, 243, 291, 332
AcuI	CTGAAG	1 cut(s)	82
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	1 cut(s)	440
AfiI	CCNNNNNNNGG	3 cut(s)	15, 360, 414
AgsI	TTSAA	1 cut(s)	343
AjnI	CCWGG	2 cut(s)	13, 224
AluBI	AGCT	1 cut(s)	22
AluI	AGCT	1 cut(s)	22
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	1 cut(s)	389
AoxI	GGCC	5 cut(s)	3, 73, 243, 291, 332
ApeKI	GCWGC	2 cut(s)	19, 350
AsuC2I	CCSGG	1 cut(s)	183
BalI	TGGCCA	2 cut(s)	5, 293
BanI	GGYRCC	1 cut(s)	404
BbsI	GAAGAC	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	2 cut(s)	31, 362
BciT130I	CCWGG	2 cut(s)	15, 226
BcnI	CCSGG	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	389
BfaI	CTAG	1 cut(s)	360
BglI	GCCNNNNNGGC	1 cut(s)	87
BisI	GCNGC	2 cut(s)	20, 351
BlsI	GCNGC	2 cut(s)	21, 352
Bme1390I	CCNGG	3 cut(s)	15, 183, 226
BmiI	GGNNCC	3 cut(s)	80, 108, 406
BmrFI	CCNGG	3 cut(s)	15, 183, 226
BpiI	GAAGAC	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	371
BpuMI	CCSGG	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	14, 294
BsaWI	WCCGGW	1 cut(s)	146
BsaXI	ACNNNNNCTCC	4 cut(s)	116, 128, 146, 158
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 360, 414
Bse118I	RCCGGY	3 cut(s)	86, 241, 330
Bse1I	ACTGG	2 cut(s)	196, 246
BseBI	CCWGG	2 cut(s)	15, 226
BseDI	CCNNGG	2 cut(s)	14, 294
BseLI	CCNNNNNNNGG	3 cut(s)	15, 360, 414
BseMII	CTCAG	1 cut(s)	379
BseNI	ACTGG	2 cut(s)	196, 246
BseX3I	CGGCCG	1 cut(s)	73
BseXI	GCAGC	2 cut(s)	31, 362
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	5 cut(s)	5, 75, 245, 293, 334
BshNI	GGYRCC	1 cut(s)	404
BsiEI	CGRYCG	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	6 cut(s)	76, 87, 147, 183, 242, 331
BslI	CCNNNNNNNGG	3 cut(s)	15, 360, 414
BsmAI	GTCTC	1 cut(s)	389
BsnI	GGCC	5 cut(s)	5, 75, 245, 293, 334
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	2 cut(s)	24, 33
BspACI	CCGC	1 cut(s)	94
BspANI	GGCC	5 cut(s)	5, 75, 245, 293, 334
BspCNI	CTCAG	1 cut(s)	378
BspHI	TCATGA	1 cut(s)	267
BspLI	GGNNCC	3 cut(s)	80, 108, 406
BspT107I	GGYRCC	1 cut(s)	404
BsrFI	RCCGGY	3 cut(s)	86, 241, 330
BsrI	ACTGG	2 cut(s)	196, 246
BssAI	RCCGGY	3 cut(s)	86, 241, 330
BssECI	CCNNGG	2 cut(s)	14, 294
BssMI	GATC	2 cut(s)	24, 33
BssNI	GRCGYC	1 cut(s)	90
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	2 cut(s)	15, 226
Bst4CI	ACNGT	2 cut(s)	10, 169
Bst6I	CTCTTC	1 cut(s)	407
BstACI	GRCGYC	1 cut(s)	90
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstC8I	GCNNGC	4 cut(s)	88, 210, 243, 426
BstDEI	CTNAG	2 cut(s)	219, 365
BstKTI	GATC	2 cut(s)	27, 36
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	2 cut(s)	24, 33
BstMCI	CGRYCG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 238, 356
BstNI	CCWGG	2 cut(s)	15, 226
BstSCI	CCNGG	3 cut(s)	13, 181, 224
BstV1I	GCAGC	2 cut(s)	31, 362
BstV2I	GAAGAC	1 cut(s)	170
BstXI	CCANNNNNNTGG	1 cut(s)	313
BstZI	CGGCCG	1 cut(s)	73
BsuRI	GGCC	5 cut(s)	5, 75, 245, 293, 334
BtsIMutI	CAGTG	1 cut(s)	373
Cac8I	GCNNGC	4 cut(s)	88, 210, 243, 426
CciI	TCATGA	1 cut(s)	267
Cfr10I	RCCGGY	3 cut(s)	86, 241, 330
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	439
CviAII	CATG	2 cut(s)	268, 289
CviQI	GTAC	1 cut(s)	439
DdeI	CTNAG	2 cut(s)	219, 365
DpnI	GATC	2 cut(s)	26, 35
DpnII	GATC	2 cut(s)	24, 33
EaeI	YGGCCR	5 cut(s)	3, 73, 243, 291, 332
EagI	CGGCCG	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	407
EclXI	CGGCCG	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	294
Eco52I	CGGCCG	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	82
EcoRII	CCWGG	2 cut(s)	13, 224
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	2 cut(s)	271, 292
FaiI	YATR	2 cut(s)	269, 290
FalI	AAGNNNNNCTT	2 cut(s)	339, 371
FatI	CATG	2 cut(s)	267, 288
Fnu4HI	GCNGC	2 cut(s)	20, 351
Fsp4HI	GCNGC	2 cut(s)	20, 351
FspBI	CTAG	1 cut(s)	360
GluI	GCNGC	2 cut(s)	20, 351
HaeIII	GGCC	5 cut(s)	5, 75, 245, 293, 334
HapII	CCGG	6 cut(s)	76, 87, 147, 183, 242, 331
HgaI	GACGC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	2 cut(s)	271, 292
HinfI	GANTC	1 cut(s)	382
HpaII	CCGG	6 cut(s)	76, 87, 147, 183, 242, 331
Hpy166II	GTNNAC	2 cut(s)	256, 376
Hpy188III	TCNNGA	2 cut(s)	40, 268
Hpy8I	GTNNAC	2 cut(s)	256, 376
HpyAV	CCTTC	3 cut(s)	64, 268, 438
HpyCH4III	ACNGT	2 cut(s)	10, 169
HpyCH4V	TGCA	1 cut(s)	123
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 238, 356
HpyF3I	CTNAG	2 cut(s)	219, 365
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	2 cut(s)	271, 292
KroI	GCCGGC	2 cut(s)	86, 241
KroNI	GCCGGC	2 cut(s)	88, 243
Kzo9I	GATC	2 cut(s)	24, 33
LmnI	GCTCC	2 cut(s)	78, 106
Lsp1109I	GCAGC	2 cut(s)	31, 362
MaeI	CTAG	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	2 cut(s)	26, 35
MboI	GATC	2 cut(s)	24, 33
MboII	GAAGA	4 cut(s)	55, 175, 355, 424
MhlI	GDGCHC	1 cut(s)	210
MlsI	TGGCCA	2 cut(s)	5, 293
MluNI	TGGCCA	2 cut(s)	5, 293
MlyI	GAGTC	1 cut(s)	391
MnlI	CCTC	6 cut(s)	128, 137, 179, 264, 294, 408
Mox20I	TGGCCA	2 cut(s)	5, 293
MreI	CGCCGGCG	1 cut(s)	86
MroNI	GCCGGC	2 cut(s)	86, 241
MscI	TGGCCA	2 cut(s)	5, 293
Msp20I	TGGCCA	2 cut(s)	5, 293
MspA1I	CMGCKG	1 cut(s)	22
MspI	CCGG	6 cut(s)	76, 87, 147, 183, 242, 331
MspR9I	CCNGG	3 cut(s)	15, 183, 226
MvaI	CCWGG	2 cut(s)	15, 226
MwoI	GCNNNNNNNGC	3 cut(s)	87, 238, 356
NaeI	GCCGGC	2 cut(s)	88, 243
NciI	CCSGG	1 cut(s)	183
NdeII	GATC	2 cut(s)	24, 33
NgoMIV	GCCGGC	2 cut(s)	86, 241
NlaIII	CATG	2 cut(s)	271, 292
NlaIV	GGNNCC	3 cut(s)	80, 108, 406
PagI	TCATGA	1 cut(s)	267
PdiI	GCCGGC	2 cut(s)	88, 243
PkrI	GCNGC	2 cut(s)	21, 352
PleI	GAGTC	1 cut(s)	390
PpsI	GAGTC	1 cut(s)	390
Psp6I	CCWGG	2 cut(s)	13, 224
PspGI	CCWGG	2 cut(s)	13, 224
PspN4I	GGNNCC	3 cut(s)	80, 108, 406
PvuII	CAGCTG	1 cut(s)	22
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
SatI	GCNGC	2 cut(s)	20, 351
Sau3AI	GATC	2 cut(s)	24, 33
SchI	GAGTC	1 cut(s)	391
ScrFI	CCNGG	3 cut(s)	15, 183, 226
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	5 cut(s)	24, 120, 129, 315, 393
SgrAI	CRCCGGYG	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
SsiI	CCGC	1 cut(s)	94
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	3 cut(s)	13, 181, 224
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	10, 169
TscAI	CASTG	1 cut(s)	373
TseI	GCWGC	2 cut(s)	19, 350
TspRI	CASTG	1 cut(s)	373
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.