Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001660

Physical Location & Seq

Genomic Coordinates Reverse (-)

25781643 .. 25783074

Gene Structure 1432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00103250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCGACGGTTCCAGGGCAACTGATATGGGAGATAGTGAAGAAGAACAACTCTTTTCTGGTGAAGGAGTTCGGCAGAAGCCACGCCGGCGTTAGGTTCAGCAAGGAGCCCAACAACCTCTTGAACCTCCACTCCTACAAGCACTCTGGTAAAACCCTAAATTCCACATTTTCAATTTCATTTTCGGTTTGTTTAGCTTGGAAGTTTTGGTCTTTAATTGCGGAATTGGTTCATCGATTAGGGTTGGCGAACAAGAAAACTGTGACAATTCAGCCCGGTAAGGACCAATCTGTGCTGCTGGCGACGACTAAGACCAGGAAGCAGAACAAGCCTGCTGCTCTGCTCCACAAGTCTGTTTTGAAGAAGGACTTCCGCCGGATGGCCAATGCCGTCAATAATCAGAGAATTCAGAATGCATTGTGTATTTCGTTATCTGTGTTTGATCTTATGGATAAGAATATAGTGGCAAAGAACTTCTACCGGGCAGATCTGAAGCATGCAGCCCTTGCAAGGTTGAGTGCTGTTCACAGGAGCCTCAAGGTTGCCAAGTCTGGTGCGAAGAAGAGGAACAGGCAGGCTGTCAGAATCTATGGCAGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28e

Protein Analysis

200

Amino Acids

22.58

Weight (kDa)

11.03

Isoelectric Point (pI)

30.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L28e	PF01778	8 - 59	8.8e-13	Ribosomal L28e protein family
Ribosomal_L28e	PF01778	81 - 135	3.5e-09	Ribosomal L28e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19730 AT2G19730 AT2G19730 AT4G29410 AT4G29410
fragaria_vesca	FvH4_1g06820 FvH4_6g32910
malus_domestica	MD02G1072800.v1.1 MD07G1062600.v1.1 MD09G1196500.v1.1 MD15G1202600.v1.1
prunus_persica	Prupe.3G052900_v2.0.a1 Prupe.7G214600_v2.0.a1 Prupe.7G214600_v2.0.a1
pyrus_communis	pycom09g11360 pycom15g18000 pycom17g18620
rosa_chinensis	RchiOBHm_Chr1g0323731 RchiOBHm_Chr2g0092591 RchiOBHm_Chr2g0142381 RchiOBHm_Chr2g0160241 RchiOBHm_Chr5g0080201
rosa_laevigata	RLG00000016326 RLG00000019956
rosa_multiflora	Rmu_sc0001211.1_g000033 Rmu_sc0004296.1_g000002 Rmu_sc0020806.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102670 Rroxscaffold_2G00103250 Rroxscaffold_2G00148940
rosa_rugosa	Rorug02G0027800 Rorug02G0028000 Rorug02G0372400
rosa_samantha	Rh2AG073700 Rh2AG424200 Rh2BG074600 Rh2BG433800 Rh2BG561300 Rh2CG075700 Rh2DG072800 Rh2DG443700 Rh2DG569800 Rh5DG397100
rosa_wichuraiana	Rw0G015000 Rw2G005920 Rw2G045310 Rw5G024190 Rw7G017720 Rw7G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	221, 373
AcoI	YGGCCR	1 cut(s)	381
AcsI	RAATTY	2 cut(s)	160, 405
AcuI	CTGAAG	1 cut(s)	512
AfiI	CCNNNNNNNGG	3 cut(s)	93, 379, 510
AgsI	TTSAA	3 cut(s)	124, 174, 361
AjnI	CCWGG	2 cut(s)	13, 314
AloI	GAACNNNNNNTCC	2 cut(s)	116, 148
AluBI	AGCT	1 cut(s)	197
AluI	AGCT	1 cut(s)	197
AoxI	GGCC	1 cut(s)	381
ApeKI	GCWGC	3 cut(s)	295, 335, 500
ApoI	RAATTY	2 cut(s)	160, 405
Asp700I	GAANNNNTTC	3 cut(s)	68, 228, 368
AspS9I	GGNCC	1 cut(s)	283
AsuC2I	CCSGG	2 cut(s)	276, 482
AsuHPI	GGTGA	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	283
BalI	TGGCCA	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	111
BbvI	GCAGC	3 cut(s)	282, 322, 512
BccI	CCATC	1 cut(s)	373
BceAI	ACGGC	1 cut(s)	374
BciT130I	CCWGG	2 cut(s)	15, 316
BcnI	CCSGG	2 cut(s)	276, 482
BglI	GCCNNNNNGGC	1 cut(s)	87
BglII	AGATCT	1 cut(s)	487
BisI	GCNGC	3 cut(s)	296, 336, 501
BlsI	GCNGC	3 cut(s)	297, 337, 502
Bme1390I	CCNGG	4 cut(s)	15, 276, 316, 482
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	3 cut(s)	12, 108, 533
BmrFI	CCNGG	4 cut(s)	15, 276, 316, 482
BpuEI	CTTGAG	1 cut(s)	521
BpuMI	CCSGG	2 cut(s)	276, 482
Bsa29I	ATCGAT	1 cut(s)	235
BsaJI	CCNNGG	1 cut(s)	14
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 379, 510
Bse118I	RCCGGY	1 cut(s)	86
BseBI	CCWGG	2 cut(s)	15, 316
BseCI	ATCGAT	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	14
BseGI	GGATG	1 cut(s)	384
BseLI	CCNNNNNNNGG	3 cut(s)	93, 379, 510
BseXI	GCAGC	3 cut(s)	282, 322, 512
BshFI	GGCC	1 cut(s)	383
BshVI	ATCGAT	1 cut(s)	235
BsiSI	CCGG	4 cut(s)	87, 276, 376, 481
BslI	CCNNNNNNNGG	3 cut(s)	93, 379, 510
BsmI	GAATGC	1 cut(s)	418
BsnI	GGCC	1 cut(s)	383
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	442, 487
BspACI	CCGC	2 cut(s)	221, 373
BspANI	GGCC	1 cut(s)	383
BspDI	ATCGAT	1 cut(s)	235
BspLI	GGNNCC	3 cut(s)	12, 108, 533
BsrFI	RCCGGY	1 cut(s)	86
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	14
BssMI	GATC	2 cut(s)	442, 487
Bst2UI	CCWGG	2 cut(s)	15, 316
Bst4CI	ACNGT	2 cut(s)	10, 262
Bst6I	CTCTTC	1 cut(s)	557
BstAPI	GCANNNNNTGC	1 cut(s)	506
BstC8I	GCNNGC	5 cut(s)	88, 300, 333, 498, 576
BstDEI	CTNAG	1 cut(s)	309
BstF5I	GGATG	1 cut(s)	384
BstKTI	GATC	2 cut(s)	445, 490
BstMBI	GATC	2 cut(s)	442, 487
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 328, 506
BstNI	CCWGG	2 cut(s)	15, 316
BstNSI	RCATGY	1 cut(s)	500
BstSCI	CCNGG	4 cut(s)	13, 274, 314, 480
BstV1I	GCAGC	3 cut(s)	282, 322, 512
BstX2I	RGATCY	1 cut(s)	487
BstYI	RGATCY	1 cut(s)	487
Bsu15I	ATCGAT	1 cut(s)	235
BsuRI	GGCC	1 cut(s)	383
BsuTUI	ATCGAT	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	384
Cac8I	GCNNGC	5 cut(s)	88, 300, 333, 498, 576
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	283
ClaI	ATCGAT	1 cut(s)	235
CviAII	CATG	1 cut(s)	497
CviJI	RGCY	9 cut(s)	81, 109, 197, 274, 331, 383, 503, 534, 578
CviKI_1	RGCY	9 cut(s)	81, 109, 197, 274, 331, 383, 503, 534, 578
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	2 cut(s)	444, 489
DpnII	GATC	2 cut(s)	442, 487
EaeI	YGGCCR	1 cut(s)	381
Eam1104I	CTCTTC	1 cut(s)	557
EarI	CTCTTC	1 cut(s)	557
EciI	GGCGGA	1 cut(s)	362
Eco24I	GRGCYC	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	512
EcoRI	GAATTC	1 cut(s)	405
EcoRII	CCWGG	2 cut(s)	13, 314
EcoT22I	ATGCAT	1 cut(s)	418
EcoT38I	GRGCYC	1 cut(s)	111
FaeI	CATG	1 cut(s)	500
FaiI	YATR	5 cut(s)	28, 449, 461, 498, 591
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FatI	CATG	1 cut(s)	496
Fnu4HI	GCNGC	3 cut(s)	296, 336, 501
FokI	GGATG	1 cut(s)	391
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	3 cut(s)	296, 336, 501
GluI	GCNGC	3 cut(s)	296, 336, 501
HaeIII	GGCC	1 cut(s)	383
HapII	CCGG	4 cut(s)	87, 276, 376, 481
Hin1II	CATG	1 cut(s)	500
HinfI	GANTC	1 cut(s)	585
HpaII	CCGG	4 cut(s)	87, 276, 376, 481
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	526
Hpy188I	TCNGA	4 cut(s)	402, 411, 492, 584
Hpy188III	TCNNGA	1 cut(s)	121
Hpy8I	GTNNAC	1 cut(s)	526
Hpy99I	CGWCG	2 cut(s)	10, 307
HpyAV	CCTTC	2 cut(s)	58, 358
HpyCH4III	ACNGT	2 cut(s)	10, 262
HpyCH4V	TGCA	3 cut(s)	416, 500, 509
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 328, 506
HpyF3I	CTNAG	1 cut(s)	309
Hsp92II	CATG	1 cut(s)	500
KroI	GCCGGC	1 cut(s)	86
KroNI	GCCGGC	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	442, 487
LmnI	GCTCC	3 cut(s)	106, 348, 531
Lsp1109I	GCAGC	3 cut(s)	282, 322, 512
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	2 cut(s)	444, 489
MboI	GATC	2 cut(s)	442, 487
MboII	GAAGA	5 cut(s)	52, 55, 373, 571, 574
MflI	RGATCY	1 cut(s)	487
MhlI	GDGCHC	1 cut(s)	111
MlsI	TGGCCA	1 cut(s)	383
MluCI	AATT	6 cut(s)	160, 174, 216, 224, 267, 405
MluNI	TGGCCA	1 cut(s)	383
MnlI	CCTC	4 cut(s)	128, 137, 545, 558
Mox20I	TGGCCA	1 cut(s)	383
Mph1103I	ATGCAT	1 cut(s)	418
MreI	CGCCGGCG	1 cut(s)	86
MroNI	GCCGGC	1 cut(s)	86
MroXI	GAANNNNTTC	3 cut(s)	68, 228, 368
MscI	TGGCCA	1 cut(s)	383
MseI	TTAA	1 cut(s)	215
Msp20I	TGGCCA	1 cut(s)	383
MspI	CCGG	4 cut(s)	87, 276, 376, 481
MspR9I	CCNGG	4 cut(s)	15, 276, 316, 482
Mva1269I	GAATGC	1 cut(s)	418
MvaI	CCWGG	2 cut(s)	15, 316
MwoI	GCNNNNNNNGC	3 cut(s)	87, 328, 506
NaeI	GCCGGC	1 cut(s)	88
NciI	CCSGG	2 cut(s)	276, 482
NdeII	GATC	2 cut(s)	442, 487
NgoMIV	GCCGGC	1 cut(s)	86
NlaIII	CATG	1 cut(s)	500
NlaIV	GGNNCC	3 cut(s)	12, 108, 533
NmuCI	GTSAC	1 cut(s)	262
NsiI	ATGCAT	1 cut(s)	418
NspI	RCATGY	1 cut(s)	500
PaeI	GCATGC	1 cut(s)	500
PctI	GAATGC	1 cut(s)	418
PdiI	GCCGGC	1 cut(s)	88
PdmI	GAANNNNTTC	3 cut(s)	68, 228, 368
PfeI	GAWTC	1 cut(s)	585
PkrI	GCNGC	3 cut(s)	297, 337, 502
Psp6I	CCWGG	2 cut(s)	13, 314
PspGI	CCWGG	2 cut(s)	13, 314
PspN4I	GGNNCC	3 cut(s)	12, 108, 533
PspPI	GGNCC	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	487
SaqAI	TTAA	1 cut(s)	215
SatI	GCNGC	3 cut(s)	296, 336, 501
Sau3AI	GATC	2 cut(s)	442, 487
Sau96I	GGNCC	1 cut(s)	283
ScrFI	CCNGG	4 cut(s)	15, 276, 316, 482
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	6 cut(s)	98, 120, 129, 199, 515, 543
SgrAI	CRCCGGYG	1 cut(s)	86
SinI	GGWCC	1 cut(s)	283
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
SphI	GCATGC	1 cut(s)	500
Sse9I	AATT	6 cut(s)	160, 174, 216, 224, 267, 405
SsiI	CCGC	2 cut(s)	221, 373
StyD4I	CCNGG	4 cut(s)	13, 274, 314, 480
TaaI	ACNGT	2 cut(s)	10, 262
TaqI	TCGA	1 cut(s)	235
TasI	AATT	6 cut(s)	160, 174, 216, 224, 267, 405
TfiI	GAWTC	1 cut(s)	585
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	3 cut(s)	295, 335, 500
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	2 cut(s)	168, 221
VpaK11BI	GGWCC	1 cut(s)	283
XapI	RAATTY	2 cut(s)	160, 405
XceI	RCATGY	1 cut(s)	500
XmnI	GAANNNNTTC	3 cut(s)	68, 228, 368
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.