Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001660

Physical Location & Seq

Genomic Coordinates Forward (+)

2214164 .. 2214340

Gene Structure 177 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0027800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGGGGATGTTCATAAGGGCCTGGAGACTTAATGGCAGGTACACGGTGCAAGAGTATGATGATAGGTTCATGTTCACTCTGTCGGACCCGTCTGATTGGAACAAAATTCTCTGTGGCGGCCCCTGGGGCTTTGACTGTGCGCCGATGGTTCTAGCGCCATATGATGGGATTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28e

Protein Analysis

58

Amino Acids

6.68

Weight (kDa)

4.54

Isoelectric Point (pI)

31.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	4 - 54	8.4e-07	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19730 AT2G19730 AT2G19730 AT4G29410 AT4G29410
fragaria_vesca	FvH4_1g06820 FvH4_6g32910
malus_domestica	MD02G1072800.v1.1 MD07G1062600.v1.1 MD09G1196500.v1.1 MD15G1202600.v1.1
prunus_persica	Prupe.3G052900_v2.0.a1 Prupe.7G214600_v2.0.a1 Prupe.7G214600_v2.0.a1
pyrus_communis	pycom09g11360 pycom15g18000 pycom17g18620
rosa_chinensis	RchiOBHm_Chr1g0323731 RchiOBHm_Chr2g0092591 RchiOBHm_Chr2g0142381 RchiOBHm_Chr2g0160241 RchiOBHm_Chr5g0080201
rosa_laevigata	RLG00000016326 RLG00000019956
rosa_multiflora	Rmu_sc0001211.1_g000033 Rmu_sc0004296.1_g000002 Rmu_sc0020806.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102670 Rroxscaffold_2G00103250 Rroxscaffold_2G00148940
rosa_rugosa	Rorug02G0027800 Rorug02G0028000 Rorug02G0372400
rosa_samantha	Rh2AG073700 Rh2AG424200 Rh2BG074600 Rh2BG433800 Rh2BG561300 Rh2CG075700 Rh2DG072800 Rh2DG443700 Rh2DG569800 Rh5DG397100
rosa_wichuraiana	Rw0G015000 Rw2G005920 Rw2G045310 Rw5G024190 Rw7G017720 Rw7G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	27
AccB7I	CCANNNNNTGG	1 cut(s)	164
AciI	CCGC	1 cut(s)	117
AcsI	RAATTY	1 cut(s)	105
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	164
AjnI	CCWGG	2 cut(s)	20, 122
Alw26I	GTCTC	1 cut(s)	19
AoxI	GGCC	2 cut(s)	18, 118
ApoI	RAATTY	1 cut(s)	105
AspLEI	GCGC	2 cut(s)	142, 157
AspS9I	GGNCC	3 cut(s)	18, 85, 119
AvaII	GGWCC	1 cut(s)	85
BccI	CCATC	2 cut(s)	139, 158
BciT130I	CCWGG	2 cut(s)	22, 124
BcoDI	GTCTC	1 cut(s)	19
BfaI	CTAG	1 cut(s)	152
BfoI	RGCGCY	1 cut(s)	158
BfuAI	ACCTGC	1 cut(s)	27
BglI	GCCNNNNNGGC	1 cut(s)	126
BisI	GCNGC	1 cut(s)	118
BlsI	GCNGC	1 cut(s)	119
Bme1390I	CCNGG	2 cut(s)	22, 124
Bme18I	GGWCC	1 cut(s)	85
BmgT120I	GGNCC	3 cut(s)	18, 85, 119
BmiI	GGNNCC	2 cut(s)	87, 121
BmrFI	CCNGG	2 cut(s)	22, 124
BpmI	CTGGAG	1 cut(s)	43
BsaJI	CCNNGG	2 cut(s)	122, 123
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
BseBI	CCWGG	2 cut(s)	22, 124
BseDI	CCNNGG	2 cut(s)	122, 123
BseGI	GGATG	1 cut(s)	12
BseLI	CCNNNNNNNGG	1 cut(s)	164
BshFI	GGCC	2 cut(s)	20, 120
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	1 cut(s)	19
BsnI	GGCC	2 cut(s)	20, 120
BspACI	CCGC	1 cut(s)	117
BspANI	GGCC	2 cut(s)	20, 120
BspLI	GGNNCC	2 cut(s)	87, 121
BspMI	ACCTGC	1 cut(s)	27
BssECI	CCNNGG	2 cut(s)	122, 123
Bst2UI	CCWGG	2 cut(s)	22, 124
Bst4CI	ACNGT	2 cut(s)	46, 137
BstF5I	GGATG	1 cut(s)	12
BstH2I	RGCGCY	1 cut(s)	158
BstHHI	GCGC	2 cut(s)	142, 157
BstMAI	GTCTC	1 cut(s)	19
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNI	CCWGG	2 cut(s)	22, 124
BstSCI	CCNGG	2 cut(s)	20, 122
BsuRI	GGCC	2 cut(s)	20, 120
BtsCI	GGATG	1 cut(s)	12
BveI	ACCTGC	1 cut(s)	27
CfoI	GCGC	2 cut(s)	142, 157
Cfr13I	GGNCC	3 cut(s)	18, 85, 119
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	3 cut(s)	20, 120, 129
CviKI_1	RGCY	3 cut(s)	20, 120, 129
CviQI	GTAC	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	85
EcoO109I	RGGNCCY	1 cut(s)	18
EcoRII	CCWGG	2 cut(s)	20, 122
FaeI	CATG	1 cut(s)	73
FaiI	YATR	5 cut(s)	14, 57, 71, 160, 162
FatI	CATG	1 cut(s)	69
FauNDI	CATATG	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	118
FokI	GGATG	1 cut(s)	19
Fsp4HI	GCNGC	1 cut(s)	118
FspBI	CTAG	1 cut(s)	152
GlaI	GCGC	2 cut(s)	141, 156
GluI	GCNGC	1 cut(s)	118
GsuI	CTGGAG	1 cut(s)	43
HaeII	RGCGCY	1 cut(s)	158
HaeIII	GGCC	2 cut(s)	20, 120
HhaI	GCGC	2 cut(s)	142, 157
Hin1II	CATG	1 cut(s)	73
Hin6I	GCGC	2 cut(s)	140, 155
HinP1I	GCGC	2 cut(s)	140, 155
Hpy166II	GTNNAC	2 cut(s)	42, 75
Hpy188I	TCNGA	2 cut(s)	85, 94
Hpy8I	GTNNAC	2 cut(s)	42, 75
HpyCH4III	ACNGT	2 cut(s)	46, 137
HpyCH4V	TGCA	1 cut(s)	49
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	73
HspAI	GCGC	2 cut(s)	140, 155
LpnPI	CCDG	5 cut(s)	7, 22, 34, 109, 136
MaeI	CTAG	1 cut(s)	152
MluCI	AATT	1 cut(s)	105
MmeI	TCCRAC	1 cut(s)	63
MseI	TTAA	1 cut(s)	30
MspR9I	CCNGG	2 cut(s)	22, 124
MvaI	CCWGG	2 cut(s)	22, 124
MwoI	GCNNNNNNNGC	1 cut(s)	126
NdeI	CATATG	1 cut(s)	160
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	2 cut(s)	87, 121
PasI	CCCWGGG	1 cut(s)	123
PflMI	CCANNNNNTGG	1 cut(s)	164
PkrI	GCNGC	1 cut(s)	119
Psp6I	CCWGG	2 cut(s)	20, 122
PspGI	CCWGG	2 cut(s)	20, 122
PspN4I	GGNNCC	2 cut(s)	87, 121
PspPI	GGNCC	3 cut(s)	18, 85, 119
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	1 cut(s)	118
Sau96I	GGNCC	3 cut(s)	18, 85, 119
ScrFI	CCNGG	2 cut(s)	22, 124
SetI	ASST	2 cut(s)	41, 68
SinI	GGWCC	1 cut(s)	85
Sse9I	AATT	1 cut(s)	105
SsiI	CCGC	1 cut(s)	117
SspMI	CTAG	1 cut(s)	152
StyD4I	CCNGG	2 cut(s)	20, 122
TaaI	ACNGT	2 cut(s)	46, 137
TasI	AATT	1 cut(s)	105
TauI	GCSGC	1 cut(s)	120
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TspDTI	ATGAA	1 cut(s)	58
Van91I	CCANNNNNTGG	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	85
XapI	RAATTY	1 cut(s)	105
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.