Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001660

Physical Location & Seq

Genomic Coordinates Reverse (-)

62556139 .. 62556812

Gene Structure 674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG397100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 265 bp

ATGTTTAGGACAGAAGTACTAGAATATCATCAAGTACCAAGCATTGCTACTAACCCAATATCCAATATCCTAAATTTCTCATCTGAGGCGGAGCAAAATCCTAACAGGGTAAGAGGATTGGCGATGGTTCCAGGGCAACTGATATGGGAGATAGTGAAGAAGAACAACTCTTTTCTGGTGAAGGAGTTAAGCAGAAGCCACACCGGCGTTAGGTTTAGCAAGGAGCCCAGCAACCTCTTGAATCTCCACTCCTACAAGCAATCCG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28e

Protein Analysis

88

Amino Acids

10.07

Weight (kDa)

9.6

Isoelectric Point (pI)

45.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L28e	PF01778	47 - 88	4.5e-11	Ribosomal L28e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19730 AT2G19730 AT2G19730 AT4G29410 AT4G29410
fragaria_vesca	FvH4_1g06820 FvH4_6g32910
malus_domestica	MD02G1072800.v1.1 MD07G1062600.v1.1 MD09G1196500.v1.1 MD15G1202600.v1.1
prunus_persica	Prupe.3G052900_v2.0.a1 Prupe.7G214600_v2.0.a1 Prupe.7G214600_v2.0.a1
pyrus_communis	pycom09g11360 pycom15g18000 pycom17g18620
rosa_chinensis	RchiOBHm_Chr1g0323731 RchiOBHm_Chr2g0092591 RchiOBHm_Chr2g0142381 RchiOBHm_Chr2g0160241 RchiOBHm_Chr5g0080201
rosa_laevigata	RLG00000016326 RLG00000019956
rosa_multiflora	Rmu_sc0001211.1_g000033 Rmu_sc0004296.1_g000002 Rmu_sc0020806.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102670 Rroxscaffold_2G00103250 Rroxscaffold_2G00148940
rosa_rugosa	Rorug02G0027800 Rorug02G0028000 Rorug02G0372400
rosa_samantha	Rh2AG073700 Rh2AG424200 Rh2BG074600 Rh2BG433800 Rh2BG561300 Rh2CG075700 Rh2DG072800 Rh2DG443700 Rh2DG569800 Rh5DG397100
rosa_wichuraiana	Rw0G015000 Rw2G005920 Rw2G045310 Rw5G024190 Rw7G017720 Rw7G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	89
AcsI	RAATTY	1 cut(s)	73
AfaI	GTAC	2 cut(s)	18, 36
AfiI	CCNNNNNNNGG	1 cut(s)	210
AgsI	TTSAA	1 cut(s)	241
AjnI	CCWGG	1 cut(s)	130
ApoI	RAATTY	1 cut(s)	73
AsuHPI	GGTGA	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	228
BccI	CCATC	1 cut(s)	118
BciT130I	CCWGG	1 cut(s)	132
BfaI	CTAG	1 cut(s)	20
BglI	GCCNNNNNGGC	1 cut(s)	204
BmcAI	AGTACT	1 cut(s)	18
Bme1390I	CCNGG	1 cut(s)	132
BmiI	GGNNCC	2 cut(s)	129, 225
BmrFI	CCNGG	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse118I	RCCGGY	1 cut(s)	203
Bse3DI	GCAATG	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	75
BseYI	CCCAGC	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	204
BslI	CCNNNNNNNGG	1 cut(s)	210
Bsp1286I	GDGCHC	1 cut(s)	228
BspACI	CCGC	1 cut(s)	89
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	2 cut(s)	129, 225
BsrDI	GCAATG	1 cut(s)	42
BsrFI	RCCGGY	1 cut(s)	203
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	131
Bst2UI	CCWGG	1 cut(s)	132
BstDEI	CTNAG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	1 cut(s)	204
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	130
BtgZI	GCGATG	1 cut(s)	137
Cfr10I	RCCGGY	1 cut(s)	203
Csp6I	GTAC	2 cut(s)	17, 35
CviJI	RGCY	2 cut(s)	198, 226
CviKI_1	RGCY	2 cut(s)	198, 226
CviQI	GTAC	2 cut(s)	17, 35
DdeI	CTNAG	1 cut(s)	84
EciI	GGCGGA	1 cut(s)	104
Eco24I	GRGCYC	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	228
FaiI	YATR	1 cut(s)	145
FriOI	GRGCYC	1 cut(s)	228
FspBI	CTAG	1 cut(s)	20
GsaI	CCCAGC	1 cut(s)	231
HapII	CCGG	1 cut(s)	204
HinfI	GANTC	1 cut(s)	241
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	1 cut(s)	190
Hpy188I	TCNGA	1 cut(s)	85
Hpy188III	TCNNGA	1 cut(s)	238
HpyAV	CCTTC	1 cut(s)	175
HpyF10VI	GCNNNNNNNGC	1 cut(s)	204
HpyF3I	CTNAG	1 cut(s)	84
LmnI	GCTCC	2 cut(s)	91, 223
LpnPI	CCDG	6 cut(s)	91, 117, 144, 161, 217, 241
MaeI	CTAG	1 cut(s)	20
MboII	GAAGA	2 cut(s)	169, 172
MhlI	GDGCHC	1 cut(s)	228
MluCI	AATT	1 cut(s)	73
MnlI	CCTC	3 cut(s)	79, 107, 245
MseI	TTAA	1 cut(s)	188
MspI	CCGG	1 cut(s)	204
MspR9I	CCNGG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	204
NlaIV	GGNNCC	2 cut(s)	129, 225
PfeI	GAWTC	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	130
PspFI	CCCAGC	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	129, 225
RsaI	GTAC	2 cut(s)	18, 36
RsaNI	GTAC	2 cut(s)	17, 35
SaqAI	TTAA	1 cut(s)	188
ScaI	AGTACT	1 cut(s)	18
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	2 cut(s)	215, 237
SgrAI	CRCCGGYG	1 cut(s)	203
Sse9I	AATT	1 cut(s)	73
SsiI	CCGC	1 cut(s)	89
SspMI	CTAG	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	130
TasI	AATT	1 cut(s)	73
TatI	WGTACW	1 cut(s)	16
TfiI	GAWTC	1 cut(s)	241
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
XapI	RAATTY	1 cut(s)	73
XspI	CTAG	1 cut(s)	20
ZrmI	AGTACT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.