Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001660

Physical Location & Seq

Genomic Coordinates Forward (+)

3745791 .. 3747838

Gene Structure 2048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G052900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCGACGGTGCCAGGGCAACTGATCTGGGAGATAGTGAAGAAGAACAACTCTTTTCTGGTGAAGGAGTTCGGGAGAAGCCACGCCGGTGTGCGGTTCAGCAAGGAGCCCAACAATCTCCTCAACCTCAACACCTACAAGCACTCTGGGCTGGCAAACAAGAAAACTGTGACCATTGAGGCTGTGGGTAAAGATCAATCTGTGTTGTTGGCAACAACTAAGACCAAGAAGCAGAACAAACCTGCTGCTTTGCTCCATAAGTCTGTGATGAAACAGGAGTTTCGCAGGATGGCCAAGGCAGTCGCAAACCAGGTGGCAGATAACTACTACAGGCCAGATCTGAAAAAAGCAGCCCTTGCAAGGTTGAGTGTTGTTCACAAGAGCCTCAAGGTTGCCAAGTCTGGTGTCAAGAAGAGGAACAGGCAAGCTGTTAGAGTCTATGGCAGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28e

Protein Analysis

151

Amino Acids

16.84

Weight (kDa)

10.81

Isoelectric Point (pI)

36.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19730 AT2G19730 AT2G19730 AT4G29410 AT4G29410
fragaria_vesca	FvH4_1g06820 FvH4_6g32910
malus_domestica	MD02G1072800.v1.1 MD07G1062600.v1.1 MD09G1196500.v1.1 MD15G1202600.v1.1
prunus_persica	Prupe.3G052900_v2.0.a1 Prupe.7G214600_v2.0.a1 Prupe.7G214600_v2.0.a1
pyrus_communis	pycom09g11360 pycom15g18000 pycom17g18620
rosa_chinensis	RchiOBHm_Chr1g0323731 RchiOBHm_Chr2g0092591 RchiOBHm_Chr2g0142381 RchiOBHm_Chr2g0160241 RchiOBHm_Chr5g0080201
rosa_laevigata	RLG00000016326 RLG00000019956
rosa_multiflora	Rmu_sc0001211.1_g000033 Rmu_sc0004296.1_g000002 Rmu_sc0020806.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102670 Rroxscaffold_2G00103250 Rroxscaffold_2G00148940
rosa_rugosa	Rorug02G0027800 Rorug02G0028000 Rorug02G0372400
rosa_samantha	Rh2AG073700 Rh2AG424200 Rh2BG074600 Rh2BG433800 Rh2BG561300 Rh2CG075700 Rh2DG072800 Rh2DG443700 Rh2DG569800 Rh5DG397100
rosa_wichuraiana	Rw0G015000 Rw2G005920 Rw2G045310 Rw5G024190 Rw7G017720 Rw7G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	250
AccB1I	GGYRCC	1 cut(s)	10
AciI	CCGC	1 cut(s)	94
AcoI	YGGCCR	1 cut(s)	291
AfiI	CCNNNNNNNGG	2 cut(s)	93, 360
AjnI	CCWGG	2 cut(s)	13, 309
AleI	CACNNNNGTG	1 cut(s)	87
AluBI	AGCT	1 cut(s)	428
AluI	AGCT	1 cut(s)	428
AoxI	GGCC	2 cut(s)	291, 332
ApeKI	GCWGC	2 cut(s)	245, 350
Asp700I	GAANNNNTTC	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	73
BalI	TGGCCA	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	111
BbvI	GCAGC	2 cut(s)	232, 362
BccI	CCATC	1 cut(s)	283
BciT130I	CCWGG	2 cut(s)	15, 311
BfmI	CTRYAG	1 cut(s)	328
BfuAI	ACCTGC	1 cut(s)	250
BglII	AGATCT	1 cut(s)	337
BisI	GCNGC	2 cut(s)	246, 351
BlsI	GCNGC	2 cut(s)	247, 352
Bme1390I	CCNGG	2 cut(s)	15, 311
BmiI	GGNNCC	2 cut(s)	12, 108
BmrFI	CCNGG	2 cut(s)	15, 311
BpuEI	CTTGAG	1 cut(s)	371
BsaJI	CCNNGG	2 cut(s)	14, 294
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 360
Bse118I	RCCGGY	1 cut(s)	86
BseBI	CCWGG	2 cut(s)	15, 311
BseDI	CCNNGG	2 cut(s)	14, 294
BseGI	GGATG	1 cut(s)	294
BseLI	CCNNNNNNNGG	2 cut(s)	93, 360
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	2 cut(s)	232, 362
BshFI	GGCC	2 cut(s)	293, 334
BshNI	GGYRCC	1 cut(s)	10
BsiSI	CCGG	1 cut(s)	87
BslI	CCNNNNNNNGG	2 cut(s)	93, 360
BsnI	GGCC	2 cut(s)	293, 334
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	3 cut(s)	24, 193, 337
BspACI	CCGC	1 cut(s)	94
BspANI	GGCC	2 cut(s)	293, 334
BspLI	GGNNCC	2 cut(s)	12, 108
BspMI	ACCTGC	1 cut(s)	250
BspT107I	GGYRCC	1 cut(s)	10
BsrFI	RCCGGY	1 cut(s)	86
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	2 cut(s)	14, 294
BssMI	GATC	3 cut(s)	24, 193, 337
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	2 cut(s)	15, 311
Bst4CI	ACNGT	2 cut(s)	10, 169
Bst6I	CTCTTC	1 cut(s)	407
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstC8I	GCNNGC	2 cut(s)	153, 426
BstDEI	CTNAG	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	294
BstKTI	GATC	3 cut(s)	27, 196, 340
BstMBI	GATC	3 cut(s)	24, 193, 337
BstMWI	GCNNNNNNNGC	2 cut(s)	148, 356
BstNI	CCWGG	2 cut(s)	15, 311
BstSCI	CCNGG	2 cut(s)	13, 309
BstSFI	CTRYAG	1 cut(s)	328
BstV1I	GCAGC	2 cut(s)	232, 362
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BsuRI	GGCC	2 cut(s)	293, 334
BtsCI	GGATG	1 cut(s)	294
BveI	ACCTGC	1 cut(s)	250
Cac8I	GCNNGC	2 cut(s)	153, 426
Cfr10I	RCCGGY	1 cut(s)	86
CsiI	ACCWGGT	1 cut(s)	309
CspCI	CAANNNNNGTGG	2 cut(s)	294, 329
CviJI	RGCY	9 cut(s)	81, 109, 151, 182, 293, 334, 353, 384, 428
CviKI_1	RGCY	9 cut(s)	81, 109, 151, 182, 293, 334, 353, 384, 428
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	3 cut(s)	26, 195, 339
DpnII	GATC	3 cut(s)	24, 193, 337
EaeI	YGGCCR	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	407
Eco130I	CCWWGG	1 cut(s)	294
Eco24I	GRGCYC	1 cut(s)	111
EcoRII	CCWGG	2 cut(s)	13, 309
EcoT14I	CCWWGG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	294
FaiI	YATR	2 cut(s)	258, 441
FalI	AAGNNNNNCTT	2 cut(s)	339, 371
Fnu4HI	GCNGC	2 cut(s)	246, 351
FokI	GGATG	1 cut(s)	301
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	2 cut(s)	246, 351
GluI	GCNGC	2 cut(s)	246, 351
HaeIII	GGCC	2 cut(s)	293, 334
HapII	CCGG	1 cut(s)	87
HinfI	GANTC	1 cut(s)	435
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	1 cut(s)	342
Hpy188III	TCNNGA	2 cut(s)	73, 409
Hpy8I	GTNNAC	1 cut(s)	376
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	2 cut(s)	10, 169
HpyCH4V	TGCA	1 cut(s)	359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	148, 356
HpyF3I	CTNAG	1 cut(s)	219
Kzo9I	GATC	3 cut(s)	24, 193, 337
LmnI	GCTCC	2 cut(s)	106, 258
Lsp1109I	GCAGC	2 cut(s)	232, 362
MabI	ACCWGGT	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	3 cut(s)	26, 195, 339
MboI	GATC	3 cut(s)	24, 193, 337
MboII	GAAGA	3 cut(s)	52, 55, 424
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	1 cut(s)	111
MlsI	TGGCCA	1 cut(s)	293
MluNI	TGGCCA	1 cut(s)	293
MlyI	GAGTC	1 cut(s)	444
MnlI	CCTC	5 cut(s)	131, 137, 172, 395, 408
Mox20I	TGGCCA	1 cut(s)	293
MroXI	GAANNNNTTC	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	293
MslI	CAYNNNNRTG	1 cut(s)	87
Msp20I	TGGCCA	1 cut(s)	293
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	2 cut(s)	15, 311
MvaI	CCWGG	2 cut(s)	15, 311
MwoI	GCNNNNNNNGC	2 cut(s)	148, 356
NdeII	GATC	3 cut(s)	24, 193, 337
NlaIV	GGNNCC	2 cut(s)	12, 108
NmuCI	GTSAC	1 cut(s)	169
OliI	CACNNNNGTG	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	68
PkrI	GCNGC	2 cut(s)	247, 352
PleI	GAGTC	1 cut(s)	443
PpsI	GAGTC	1 cut(s)	443
Psp6I	CCWGG	2 cut(s)	13, 309
PspGI	CCWGG	2 cut(s)	13, 309
PspN4I	GGNNCC	2 cut(s)	12, 108
PsuI	RGATCY	1 cut(s)	337
RseI	CAYNNNNRTG	1 cut(s)	87
SatI	GCNGC	2 cut(s)	246, 351
Sau3AI	GATC	3 cut(s)	24, 193, 337
SchI	GAGTC	1 cut(s)	444
ScrFI	CCNGG	2 cut(s)	15, 311
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	7 cut(s)	129, 137, 244, 315, 365, 393, 430
SexAI	ACCWGGT	1 cut(s)	309
SfcI	CTRYAG	1 cut(s)	328
SgrAI	CRCCGGYG	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
SsiI	CCGC	1 cut(s)	94
StyD4I	CCNGG	2 cut(s)	13, 309
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	10, 169
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	2 cut(s)	245, 350
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	1 cut(s)	284
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181
XmnI	GAANNNNTTC	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.