Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001660

Physical Location & Seq

Genomic Coordinates Reverse (-)

61192849 .. 61193191

Gene Structure 343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G039720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGCGATGGTTCCAGGGCAACTGATGTGGGAGACAGTGAAGAAGAACAACTCTTTTCTGGTGAAGGAGTTCAGCAGAAGCCACGCCGGTGTTAGGTTCAGCAAGGAGCCCAGCAACCTCTTGAATCTCCACTCCTACAAGCAATCTGGGTTGGCAAACAAAAAAACTGTGACAATTCAGCCCAGTAAGGACCAATATGTGTTGCCGGCGACGACTACGACCAAGAAGCATCTGATAGTGAATTGCATGATTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28e

Protein Analysis

85

Amino Acids

9.56

Weight (kDa)

10.01

Isoelectric Point (pI)

45.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L28e	PF01778	8 - 77	1.6e-19	Ribosomal L28e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19730 AT2G19730 AT2G19730 AT4G29410 AT4G29410
fragaria_vesca	FvH4_1g06820 FvH4_6g32910
malus_domestica	MD02G1072800.v1.1 MD07G1062600.v1.1 MD09G1196500.v1.1 MD15G1202600.v1.1
prunus_persica	Prupe.3G052900_v2.0.a1 Prupe.7G214600_v2.0.a1 Prupe.7G214600_v2.0.a1
pyrus_communis	pycom09g11360 pycom15g18000 pycom17g18620
rosa_chinensis	RchiOBHm_Chr1g0323731 RchiOBHm_Chr2g0092591 RchiOBHm_Chr2g0142381 RchiOBHm_Chr2g0160241 RchiOBHm_Chr5g0080201
rosa_laevigata	RLG00000016326 RLG00000019956
rosa_multiflora	Rmu_sc0001211.1_g000033 Rmu_sc0004296.1_g000002 Rmu_sc0020806.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102670 Rroxscaffold_2G00103250 Rroxscaffold_2G00148940
rosa_rugosa	Rorug02G0027800 Rorug02G0028000 Rorug02G0372400
rosa_samantha	Rh2AG073700 Rh2AG424200 Rh2BG074600 Rh2BG433800 Rh2BG561300 Rh2CG075700 Rh2DG072800 Rh2DG443700 Rh2DG569800 Rh5DG397100
rosa_wichuraiana	Rw0G015000 Rw2G005920 Rw2G045310 Rw5G024190 Rw7G017720 Rw7G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	93
AgsI	TTSAA	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	13
AleI	CACNNNNGTG	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	26
Asp700I	GAANNNNTTC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	190
AsuHPI	GGTGA	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	111
BciT130I	CCWGG	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	26
Bme1390I	CCNGG	1 cut(s)	15
Bme18I	GGWCC	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	2 cut(s)	12, 108
BmrFI	CCNGG	1 cut(s)	15
BmrI	ACTGGG	1 cut(s)	177
BmsI	GCATC	1 cut(s)	238
BmuI	ACTGGG	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse118I	RCCGGY	2 cut(s)	86, 205
Bse1I	ACTGG	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	14
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	183
BseYI	CCCAGC	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	87, 206
BslI	CCNNNNNNNGG	1 cut(s)	93
BsmAI	GTCTC	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	111
BspLI	GGNNCC	2 cut(s)	12, 108
BsrFI	RCCGGY	2 cut(s)	86, 205
BsrI	ACTGG	1 cut(s)	183
BssAI	RCCGGY	2 cut(s)	86, 205
BssECI	CCNNGG	1 cut(s)	14
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	2 cut(s)	37, 169
BstC8I	GCNNGC	1 cut(s)	207
BstMAI	GTCTC	1 cut(s)	26
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BtgZI	GCGATG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	42
Cac8I	GCNNGC	1 cut(s)	207
Cfr10I	RCCGGY	2 cut(s)	86, 205
Cfr13I	GGNCC	1 cut(s)	190
CspCI	CAANNNNNGTGG	2 cut(s)	8, 43
CviAII	CATG	2 cut(s)	247, 255
CviJI	RGCY	3 cut(s)	81, 109, 181
CviKI_1	RGCY	3 cut(s)	81, 109, 181
Eco24I	GRGCYC	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	13
EcoT38I	GRGCYC	1 cut(s)	111
FaeI	CATG	2 cut(s)	250, 258
FaiI	YATR	3 cut(s)	198, 248, 256
FatI	CATG	2 cut(s)	246, 254
FriOI	GRGCYC	1 cut(s)	111
GsaI	CCCAGC	1 cut(s)	114
HapII	CCGG	2 cut(s)	87, 206
Hin1II	CATG	2 cut(s)	250, 258
HinfI	GANTC	1 cut(s)	124
HpaII	CCGG	2 cut(s)	87, 206
HphI	GGTGA	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	234
Hpy188III	TCNNGA	1 cut(s)	121
Hpy99I	CGWCG	1 cut(s)	214
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	2 cut(s)	37, 169
HpyCH4V	TGCA	2 cut(s)	246, 254
Hsp92II	CATG	2 cut(s)	250, 258
KroI	GCCGGC	1 cut(s)	205
KroNI	GCCGGC	1 cut(s)	207
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	7 cut(s)	27, 44, 100, 124, 132, 196, 219
LweI	GCATC	1 cut(s)	238
MaeIII	GTNAC	1 cut(s)	169
MboII	GAAGA	2 cut(s)	52, 55
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	2 cut(s)	174, 241
MnlI	CCTC	1 cut(s)	128
MroNI	GCCGGC	1 cut(s)	205
MroXI	GAANNNNTTC	1 cut(s)	68
MslI	CAYNNNNRTG	1 cut(s)	87
MspI	CCGG	2 cut(s)	87, 206
MspR9I	CCNGG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	15
NaeI	GCCGGC	1 cut(s)	207
NgoMIV	GCCGGC	1 cut(s)	205
NlaIII	CATG	2 cut(s)	250, 258
NlaIV	GGNNCC	2 cut(s)	12, 108
NmuCI	GTSAC	1 cut(s)	169
OliI	CACNNNNGTG	1 cut(s)	87
PdiI	GCCGGC	1 cut(s)	207
PdmI	GAANNNNTTC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	13
PspFI	CCCAGC	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	2 cut(s)	12, 108
PspPI	GGNCC	1 cut(s)	190
RseI	CAYNNNNRTG	1 cut(s)	87
Sau96I	GGNCC	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	15
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	2 cut(s)	98, 120
SfaNI	GCATC	1 cut(s)	238
SgrAI	CRCCGGYG	1 cut(s)	86
SinI	GGWCC	1 cut(s)	190
SmiMI	CAYNNNNRTG	1 cut(s)	87
Sse9I	AATT	2 cut(s)	174, 241
StyD4I	CCNGG	1 cut(s)	13
TaaI	ACNGT	2 cut(s)	37, 169
TasI	AATT	2 cut(s)	174, 241
TfiI	GAWTC	1 cut(s)	124
TscAI	CASTG	1 cut(s)	42
TseFI	GTSAC	1 cut(s)	169
Tsp45I	GTSAC	1 cut(s)	169
TspRI	CASTG	1 cut(s)	42
VpaK11BI	GGWCC	1 cut(s)	190
XmnI	GAANNNNTTC	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.