AT2G20830

Formiminotransferase domain, N-terminal subdomain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0001831
Physical Location & Seq
Reverse (-)
8968195 .. 8970739
2545 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G20830.4

Sequence Viewer

Length: 894 bp
ATGTTGAGAGAAATGCTTGGTTGTTGCAAGGTTTACATATCTGAAGCGCGGAATAAGACGGCCCTCGAAGCCATTGAGAGAGCTTTAAAGCCTTTTCCACCAGCTGCAATTGTCAACAAGTTTGAAGATGCGGCTTATGGCAGGGTTGGTTACACTGTTGTATCCTCGCTTGCTAACGGGTCGTCTTCTTCCTTGAAGAATGCGGTGTTTGCTATGGTTAAGACTGCTCTCGACACTATCAATCTTGAGTTGCACTGTGGATCTCATCCCCGCCTTGGAGTGGTTGACCACATATGCTTTCACCCCTTATCTCAAACCTCTATAGAACAAGTTTCTTCCGTCGCCAATTCCCTTGCAATGGATATCGGCTCCATTCTTCGAGTTCCTACATATCTCTATGGAGCAGCAGAAAAGGAGCAGTGCACCCTGGATTCGATCAGAAGAAAGCTGGGGTACTTCAAGGCAAACAGGGAGGGACATGAATGGGCAGGTGGGTTTGACCTGGAGATGGTGCCACTGAAGCCAGACGCAGGGCCACAAGAGGTGAGCAAAGCCAAAGGGGTTGTAGCGGTTGGGGCGTGTGGGTGGGTAAGTAACTATAACGTGCCTGTCATGTCAAACGATCTCAAGGCAGTGAGGAGAATAGCGAGGAAGACGAGCGAGAGAGGAGGGGGCTTGGCTTCAGTGCAGACAATGGCGCTGGTGCACGGGGAAGGAGTCATAGAGGTTGCCTGTAACTTGTTGAATCCAAGCCAAGTGGGGGGAGATGAAGTACAGGGACTGATCGAGAGGCTTGGCAGAGAGGAAGGTCTGCTTGTGGGAAAAGGGTATTATACGGACTATACACCTGACCAGATCGTTGAAAGATATATGGACTTGCTCAACAATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FTCD_N Yae1_N

Protein Analysis

297

Amino Acids

32.14

Weight (kDa)

6.33

Isoelectric Point (pI)

37.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FTCD_N PF07837 8 - 193 4.5e-52 Formiminotransferase domain, N-terminal subdomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 479
Acc36I ACCTGC 1 cut(s) 479
AccB1I GGYRCC 1 cut(s) 511
AccII CGCG 1 cut(s) 49
AciI CCGC 5 cut(s) 49, 131, 203, 271, 569
AclWI GGATC 1 cut(s) 268
AcuI CTGAAG 3 cut(s) 63, 539, 666
AfaI GTAC 2 cut(s) 455, 774
AfiI CCNNNNNNNGG 6 cut(s) 275, 280, 358, 508, 530, 760
AgsI TTSAA 5 cut(s) 125, 196, 460, 745, 863
AjnI CCWGG 2 cut(s) 426, 501
AluBI AGCT 3 cut(s) 83, 104, 448
AluI AGCT 3 cut(s) 83, 104, 448
Alw21I GWGCWC 2 cut(s) 425, 708
Alw44I GTGCAC 2 cut(s) 421, 704
AlwI GGATC 1 cut(s) 268
AlwNI CAGNNNCTG 1 cut(s) 781
AoxI GGCC 2 cut(s) 60, 533
ApaLI GTGCAC 2 cut(s) 421, 704
ApeKI GCWGC 2 cut(s) 104, 404
AspLEI GCGC 2 cut(s) 49, 700
AspS9I GGNCC 2 cut(s) 61, 533
AsuHPI GGTGA 2 cut(s) 293, 556
BaeGI GKGCMC 2 cut(s) 425, 708
BaeI ACNNNNGTAYC 2 cut(s) 144, 177
BanI GGYRCC 1 cut(s) 511
BbsI GAAGAC 2 cut(s) 177, 659
Bbv12I GWGCWC 2 cut(s) 425, 708
BbvI GCAGC 2 cut(s) 91, 416
BccI CCATC 1 cut(s) 502
BceAI ACGGC 1 cut(s) 75
BciT130I CCWGG 2 cut(s) 428, 503
BciVI GTATCC 1 cut(s) 172
BfmI CTRYAG 1 cut(s) 321
BfoI RGCGCY 1 cut(s) 701
BfuAI ACCTGC 1 cut(s) 479
BfuI GTATCC 1 cut(s) 172
BisI GCNGC 3 cut(s) 105, 132, 405
BlsI GCNGC 3 cut(s) 106, 133, 406
Bme1390I CCNGG 2 cut(s) 428, 503
BmgT120I GGNCC 2 cut(s) 61, 533
BmiI GGNNCC 2 cut(s) 370, 513
BmrFI CCNGG 2 cut(s) 428, 503
BmsI GCATC 1 cut(s) 118
BpiI GAAGAC 2 cut(s) 177, 659
BpmI CTGGAG 1 cut(s) 524
BpuEI CTTGAG 2 cut(s) 266, 611
BsaJI CCNNGG 2 cut(s) 274, 426
BsaXI ACNNNNNCTCC 2 cut(s) 756, 786
Bsc4I CCNNNNNNNGG 6 cut(s) 275, 280, 358, 508, 530, 760
Bse3DI GCAATG 1 cut(s) 363
BseBI CCWGG 2 cut(s) 428, 503
BseDI CCNNGG 2 cut(s) 274, 426
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 6 cut(s) 275, 280, 358, 508, 530, 760
BseMI GCAATG 1 cut(s) 363
BseRI GAGGAG 2 cut(s) 652, 681
BseSI GKGCMC 2 cut(s) 425, 708
BseXI GCAGC 2 cut(s) 91, 416
BseYI CCCAGC 1 cut(s) 448
BsgI GTGCAG 1 cut(s) 707
Bsh1236I CGCG 1 cut(s) 49
BshFI GGCC 2 cut(s) 62, 535
BshNI GGYRCC 1 cut(s) 511
BsiHKAI GWGCWC 2 cut(s) 425, 708
BslFI GGGAC 2 cut(s) 489, 792
BslI CCNNNNNNNGG 6 cut(s) 275, 280, 358, 508, 530, 760
BsmFI GGGAC 2 cut(s) 489, 792
BsmI GAATGC 1 cut(s) 205
BsnI GGCC 2 cut(s) 62, 535
Bsp1286I GDGCHC 2 cut(s) 425, 708
Bsp143I GATC 5 cut(s) 260, 435, 622, 783, 855
BspACI CCGC 5 cut(s) 49, 131, 203, 271, 569
BspANI GGCC 2 cut(s) 62, 535
BspFNI CGCG 1 cut(s) 49
BspLI GGNNCC 2 cut(s) 370, 513
BspMI ACCTGC 1 cut(s) 479
BspPI GGATC 1 cut(s) 268
BspT107I GGYRCC 1 cut(s) 511
BsrDI GCAATG 1 cut(s) 363
BssECI CCNNGG 2 cut(s) 274, 426
BssMI GATC 5 cut(s) 260, 435, 622, 783, 855
BssT1I CCWWGG 1 cut(s) 274
Bst2UI CCWGG 2 cut(s) 428, 503
Bst4CI ACNGT 2 cut(s) 157, 257
BstC8I GCNNGC 1 cut(s) 171
BstF5I GGATG 1 cut(s) 265
BstFNI CGCG 1 cut(s) 49
BstH2I RGCGCY 1 cut(s) 701
BstHHI GCGC 2 cut(s) 49, 700
BstKTI GATC 5 cut(s) 263, 438, 625, 786, 858
BstMBI GATC 5 cut(s) 260, 435, 622, 783, 855
BstMWI GCNNNNNNNGC 4 cut(s) 68, 209, 520, 575
BstNI CCWGG 2 cut(s) 428, 503
BstSCI CCNGG 2 cut(s) 426, 501
BstSFI CTRYAG 1 cut(s) 321
BstSLI GKGCMC 2 cut(s) 425, 708
BstUI CGCG 1 cut(s) 49
BstV1I GCAGC 2 cut(s) 91, 416
BstV2I GAAGAC 2 cut(s) 177, 659
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
BsuI GTATCC 1 cut(s) 172
BsuRI GGCC 2 cut(s) 62, 535
BtsCI GGATG 1 cut(s) 265
BtsI GCAGTG 2 cut(s) 425, 639
BtsIMutI CAGTG 6 cut(s) 153, 253, 425, 515, 639, 690
BveI ACCTGC 1 cut(s) 479
Cac8I GCNNGC 1 cut(s) 171
CaiI CAGNNNCTG 1 cut(s) 781
CfoI GCGC 2 cut(s) 49, 700
Cfr13I GGNCC 2 cut(s) 61, 533
CseI GACGC 1 cut(s) 536
Csp6I GTAC 2 cut(s) 454, 773
CspCI CAANNNNNGTGG 2 cut(s) 738, 773
CviAII CATG 2 cut(s) 479, 613
CviQI GTAC 2 cut(s) 454, 773
DpnI GATC 5 cut(s) 262, 437, 624, 785, 857
DpnII GATC 5 cut(s) 260, 435, 622, 783, 855
DraI TTTAAA 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 274
Eco32I GATATC 1 cut(s) 364
Eco57I CTGAAG 3 cut(s) 63, 539, 666
EcoRII CCWGG 2 cut(s) 426, 501
EcoRV GATATC 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 274
FaeI CATG 2 cut(s) 482, 616
FalI AAGNNNNNCTT 2 cut(s) 798, 830
FaqI GGGAC 2 cut(s) 489, 792
FatI CATG 2 cut(s) 478, 612
FauI CCCGC 1 cut(s) 278
FauNDI CATATG 1 cut(s) 293
Fnu4HI GCNGC 3 cut(s) 105, 132, 405
FokI GGATG 1 cut(s) 252
Fsp4HI GCNGC 3 cut(s) 105, 132, 405
GlaI GCGC 2 cut(s) 48, 699
GluI GCNGC 3 cut(s) 105, 132, 405
GsaI CCCAGC 1 cut(s) 452
GsuI CTGGAG 1 cut(s) 524
HaeII RGCGCY 1 cut(s) 701
HaeIII GGCC 2 cut(s) 62, 535
HgaI GACGC 1 cut(s) 536
HhaI GCGC 2 cut(s) 49, 700
Hin1II CATG 2 cut(s) 482, 616
Hin6I GCGC 2 cut(s) 47, 698
HinP1I GCGC 2 cut(s) 47, 698
HincII GTYRAC 2 cut(s) 115, 286
HindII GTYRAC 2 cut(s) 115, 286
HinfI GANTC 3 cut(s) 431, 717, 745
HphI GGTGA 2 cut(s) 293, 556
Hpy166II GTNNAC 5 cut(s) 34, 115, 286, 423, 706
Hpy188I TCNGA 2 cut(s) 43, 440
Hpy188III TCNNGA 3 cut(s) 230, 245, 787
Hpy8I GTNNAC 5 cut(s) 34, 115, 286, 423, 706
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 2 cut(s) 707, 800
HpyCH4III ACNGT 2 cut(s) 157, 257
HpyCH4IV ACGT 1 cut(s) 603
HpyCH4V TGCA 7 cut(s) 27, 107, 253, 356, 423, 688, 706
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 209, 520, 575
HpySE526I ACGT 1 cut(s) 603
Hsp92II CATG 2 cut(s) 482, 616
HspAI GCGC 2 cut(s) 47, 698
Kzo9I GATC 5 cut(s) 260, 435, 622, 783, 855
LmnI GCTCC 3 cut(s) 374, 401, 415
Lsp1109I GCAGC 2 cut(s) 91, 416
LweI GCATC 1 cut(s) 118
MaeII ACGT 1 cut(s) 603
MaeIII GTNAC 3 cut(s) 149, 593, 734
MalI GATC 5 cut(s) 262, 437, 624, 785, 857
MboI GATC 5 cut(s) 260, 435, 622, 783, 855
MboII GAAGA 8 cut(s) 137, 177, 180, 208, 327, 368, 453, 664
MfeI CAATTG 1 cut(s) 108
MflI RGATCY 1 cut(s) 260
MhlI GDGCHC 2 cut(s) 425, 708
MluCI AATT 3 cut(s) 108, 346, 886
MlyI GAGTC 1 cut(s) 726
MseI TTAA 2 cut(s) 86, 219
MspA1I CMGCKG 1 cut(s) 104
MspR9I CCNGG 2 cut(s) 428, 503
MunI CAATTG 1 cut(s) 108
Mva1269I GAATGC 1 cut(s) 205
MvaI CCWGG 2 cut(s) 428, 503
MvnI CGCG 1 cut(s) 49
MwoI GCNNNNNNNGC 4 cut(s) 68, 209, 520, 575
NdeI CATATG 1 cut(s) 293
NdeII GATC 5 cut(s) 260, 435, 622, 783, 855
NlaIII CATG 2 cut(s) 482, 616
NlaIV GGNNCC 2 cut(s) 370, 513
PaqCI CACCTGC 1 cut(s) 479
PctI GAATGC 1 cut(s) 205
PfeI GAWTC 2 cut(s) 431, 745
PkrI GCNGC 3 cut(s) 106, 133, 406
PleI GAGTC 1 cut(s) 725
PpsI GAGTC 1 cut(s) 725
Psp6I CCWGG 2 cut(s) 426, 501
PspFI CCCAGC 1 cut(s) 448
PspGI CCWGG 2 cut(s) 426, 501
PspN4I GGNNCC 2 cut(s) 370, 513
PspPI GGNCC 2 cut(s) 61, 533
PstNI CAGNNNCTG 1 cut(s) 781
PsuI RGATCY 1 cut(s) 260
PvuII CAGCTG 1 cut(s) 104
RsaI GTAC 2 cut(s) 455, 774
RsaNI GTAC 2 cut(s) 454, 773
SaqAI TTAA 2 cut(s) 86, 219
SatI GCNGC 3 cut(s) 105, 132, 405
Sau3AI GATC 5 cut(s) 260, 435, 622, 783, 855
Sau96I GGNCC 2 cut(s) 61, 533
SchI GAGTC 1 cut(s) 726
ScrFI CCNGG 2 cut(s) 428, 503
SduI GDGCHC 2 cut(s) 425, 708
SfaNI GCATC 1 cut(s) 118
SfcI CTRYAG 1 cut(s) 321
SmlI CTYRAG 2 cut(s) 245, 626
SmoI CTYRAG 2 cut(s) 245, 626
Sse9I AATT 3 cut(s) 108, 346, 886
SsiI CCGC 5 cut(s) 49, 131, 203, 271, 569
StyD4I CCNGG 2 cut(s) 426, 501
StyI CCWWGG 1 cut(s) 274
TaaI ACNGT 2 cut(s) 157, 257
TaiI ACGT 1 cut(s) 606
TaqI TCGA 5 cut(s) 66, 231, 379, 434, 786
TasI AATT 3 cut(s) 108, 346, 886
TatI WGTACW 1 cut(s) 772
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 2 cut(s) 431, 745
Tru1I TTAA 2 cut(s) 86, 219
Tru9I TTAA 2 cut(s) 86, 219
TscAI CASTG 6 cut(s) 160, 260, 425, 522, 639, 690
TseI GCWGC 2 cut(s) 104, 404
TspDTI ATGAA 3 cut(s) 495, 783, 879
TspGWI ACGGA 2 cut(s) 328, 851
TspRI CASTG 6 cut(s) 160, 260, 425, 522, 639, 690
VneI GTGCAC 2 cut(s) 421, 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.