Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001831

Physical Location & Seq

Genomic Coordinates Reverse (-)

1372497 .. 1372895

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g01780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCCAGACGTTCTCCAAGAAAAGCCCGACGAAGGCCCAACTAGCGTATCTCCAGCAAGAGGCATCACAATGATCGGGGCACGTCAGTGGGTTGCCTTGTACAACATTCCCATAATGTCAACGGATGTCGCGGCCACTAAACGGATTGCACGGATGGTGAGTGCCCGAGGGGGCGGACTCCCAACCGTGCAAACACTAGGATTGCAGGGTGAGGACTGGACGGAGATAGCTTGCATGCTCTTAGATCCCAACCAAGTCGGAGCAGACCGCGTCCAGAACTACGTCGAGATGCTTGCAGCACAAGAAGGGTTGGATGTGGAGAAGGGGTACTTCACTGATTACTCACCAGATATGATTATTGAAAAATACATGAAACTGATTTCATCTGCAGAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005790 GO:0005793 GO:0005794 GO:0005829 GO:0005886 GO:0006082 GO:0006520 GO:0006547 GO:0006548 GO:0006725 GO:0006807 GO:0006996 GO:0007010 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009987 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016054 GO:0016740 GO:0016741 GO:0016742 GO:0016829 GO:0016840 GO:0016841 GO:0019439 GO:0019752 GO:0030407 GO:0030409 GO:0030412 GO:0030868 GO:0031090 GO:0031984 GO:0034641 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046483 GO:0046700 GO:0052803 GO:0052805 GO:0071704 GO:0071840 GO:0071944 GO:0097425 GO:0098588 GO:0098791 GO:0098827 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FTCD_N

Protein Analysis

133

Amino Acids

14.47

Weight (kDa)

4.47

Isoelectric Point (pI)

49.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20830 AT2G20830 AT2G20830 AT2G20830 AT2G20830 AT2G20830
fragaria_vesca	FvH4_6g44860 FvH4_6g44860 FvH4_6g44870 FvH4_6g44870 FvH4_6g44870
malus_domestica	MD09G1092400.v1.1 MD09G1092500.v1.1 MD17G1082500.v1.1
prunus_persica	Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232700_v2.0.a1 Prupe.3G232700_v2.0.a1
pyrus_communis	pycom09g01780 pycom09g01790 pycom17g08050 pycom17g08060
rosa_chinensis	RchiOBHm_Chr2g0162051 RchiOBHm_Chr2g0162061
rosa_laevigata	RLG00000021319
rosa_multiflora	Rmu_co8364399.1_g000001 Rmu_sc0005601.1_g000004 Rmu_sc0005601.1_g000005 Rmu_sc0026966.1_g000002
rosa_roxburghii	Rroxscaffold_2G00088340 Rroxscaffold_2G00088350
rosa_rugosa	Rorug02G0494300
rosa_samantha	Rh2AG560400 Rh2AG560500 Rh2BG573700 Rh2BG573800 Rh2CG544000 Rh2CG544100 Rh2DG583700 Rh2DG583800
rosa_wichuraiana	Rw2G046410 Rw2G046420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	131, 270
AciI	CCGC	3 cut(s)	131, 174, 268
AclWI	GGATC	1 cut(s)	239
AcoI	YGGCCR	1 cut(s)	132
AfaI	GTAC	2 cut(s)	101, 329
AfiI	CCNNNNNNNGG	3 cut(s)	32, 59, 141
AgsI	TTSAA	1 cut(s)	362
AjiI	CACGTC	1 cut(s)	83
AleI	CACNNNNGTG	1 cut(s)	85
AluBI	AGCT	1 cut(s)	230
AluI	AGCT	1 cut(s)	230
AlwI	GGATC	1 cut(s)	239
Ama87I	CYCGRG	1 cut(s)	165
AoxI	GGCC	2 cut(s)	34, 132
ApeKI	GCWGC	1 cut(s)	296
AspS9I	GGNCC	1 cut(s)	35
AsuHPI	GGTGA	3 cut(s)	169, 221, 336
AvaI	CYCGRG	1 cut(s)	165
BaeGI	GKGCMC	2 cut(s)	82, 166
BaeI	ACNNNNGTAYC	2 cut(s)	30, 63
BbvI	GCAGC	1 cut(s)	308
BccI	CCATC	1 cut(s)	148
BcgI	CGANNNNNNTGC	2 cut(s)	275, 309
BfaI	CTAG	2 cut(s)	42, 197
BfmI	CTRYAG	1 cut(s)	387
BisI	GCNGC	2 cut(s)	132, 297
BlsI	GCNGC	2 cut(s)	133, 298
BmeT110I	CYCGRG	1 cut(s)	165
BmgBI	CACGTC	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	35
BmsI	GCATC	2 cut(s)	72, 279
BpmI	CTGGAG	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	166
BsaXI	ACNNNNNCTCC	2 cut(s)	311, 341
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 59, 141
Bse1I	ACTGG	1 cut(s)	221
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	3 cut(s)	130, 159, 319
BseLI	CCNNNNNNNGG	3 cut(s)	32, 59, 141
BseNI	ACTGG	1 cut(s)	221
BseSI	GKGCMC	2 cut(s)	82, 166
BseXI	GCAGC	1 cut(s)	308
Bsh1236I	CGCG	2 cut(s)	131, 270
BshFI	GGCC	2 cut(s)	36, 134
BsiHKCI	CYCGRG	1 cut(s)	165
BslI	CCNNNNNNNGG	3 cut(s)	32, 59, 141
BsnI	GGCC	2 cut(s)	36, 134
BsoBI	CYCGRG	1 cut(s)	165
Bsp1286I	GDGCHC	2 cut(s)	82, 166
Bsp1407I	TGTACA	1 cut(s)	99
Bsp143I	GATC	2 cut(s)	72, 244
BspACI	CCGC	3 cut(s)	131, 174, 268
BspANI	GGCC	2 cut(s)	36, 134
BspFNI	CGCG	2 cut(s)	131, 270
BspMAI	CTGCAG	1 cut(s)	391
BspPI	GGATC	1 cut(s)	239
BsrGI	TGTACA	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	2 cut(s)	72, 244
Bst4CI	ACNGT	1 cut(s)	187
BstAUI	TGTACA	1 cut(s)	99
BstC8I	GCNNGC	3 cut(s)	232, 236, 294
BstDEI	CTNAG	1 cut(s)	241
BstF5I	GGATG	3 cut(s)	130, 159, 319
BstFNI	CGCG	2 cut(s)	131, 270
BstKTI	GATC	2 cut(s)	75, 247
BstMBI	GATC	2 cut(s)	72, 244
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstNSI	RCATGY	1 cut(s)	238
BstSFI	CTRYAG	1 cut(s)	387
BstSLI	GKGCMC	2 cut(s)	82, 166
BstUI	CGCG	2 cut(s)	131, 270
BstV1I	GCAGC	1 cut(s)	308
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BsuRI	GGCC	2 cut(s)	36, 134
BtrI	CACGTC	1 cut(s)	83
BtsCI	GGATG	3 cut(s)	130, 159, 319
BtsIMutI	CAGTG	2 cut(s)	92, 333
Cac8I	GCNNGC	3 cut(s)	232, 236, 294
Cfr13I	GGNCC	1 cut(s)	35
CseI	GACGC	1 cut(s)	259
Csp6I	GTAC	2 cut(s)	100, 328
CviAII	CATG	2 cut(s)	235, 370
CviJI	RGCY	4 cut(s)	25, 36, 134, 230
CviKI_1	RGCY	4 cut(s)	25, 36, 134, 230
CviQI	GTAC	2 cut(s)	100, 328
DdeI	CTNAG	1 cut(s)	241
DpnI	GATC	2 cut(s)	74, 246
DpnII	GATC	2 cut(s)	72, 244
EaeI	YGGCCR	1 cut(s)	132
EciI	GGCGGA	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	165
FaeI	CATG	2 cut(s)	238, 373
FaiI	YATR	4 cut(s)	113, 236, 353, 371
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FatI	CATG	2 cut(s)	234, 369
Fnu4HI	GCNGC	2 cut(s)	132, 297
FokI	GGATG	3 cut(s)	137, 166, 326
Fsp4HI	GCNGC	2 cut(s)	132, 297
FspBI	CTAG	2 cut(s)	42, 197
GluI	GCNGC	2 cut(s)	132, 297
GsuI	CTGGAG	1 cut(s)	36
HaeIII	GGCC	2 cut(s)	36, 134
HgaI	GACGC	1 cut(s)	259
Hin1II	CATG	2 cut(s)	238, 373
HincII	GTYRAC	1 cut(s)	120
HindII	GTYRAC	1 cut(s)	120
HinfI	GANTC	1 cut(s)	177
HphI	GGTGA	3 cut(s)	169, 221, 336
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	1 cut(s)	260
Hpy188III	TCNNGA	2 cut(s)	274, 286
Hpy8I	GTNNAC	1 cut(s)	120
Hpy99I	CGWCG	2 cut(s)	32, 287
HpyAV	CCTTC	3 cut(s)	26, 299, 316
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4IV	ACGT	3 cut(s)	9, 82, 282
HpyCH4V	TGCA	6 cut(s)	149, 190, 205, 234, 296, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	1 cut(s)	241
HpySE526I	ACGT	3 cut(s)	9, 82, 282
Hsp92II	CATG	2 cut(s)	238, 373
Kzo9I	GATC	2 cut(s)	72, 244
LmnI	GCTCC	1 cut(s)	260
LpnPI	CCDG	6 cut(s)	18, 66, 191, 202, 287, 360
Lsp1109I	GCAGC	1 cut(s)	308
LweI	GCATC	2 cut(s)	72, 279
MaeI	CTAG	2 cut(s)	42, 197
MaeII	ACGT	3 cut(s)	9, 82, 282
MalI	GATC	2 cut(s)	74, 246
MboI	GATC	2 cut(s)	72, 244
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	2 cut(s)	82, 166
MlyI	GAGTC	1 cut(s)	171
MmeI	TCCRAC	2 cut(s)	238, 291
MnlI	CCTC	3 cut(s)	53, 161, 205
MslI	CAYNNNNRTG	2 cut(s)	68, 85
MvnI	CGCG	2 cut(s)	131, 270
MwoI	GCNNNNNNNGC	1 cut(s)	42
NdeII	GATC	2 cut(s)	72, 244
NlaIII	CATG	2 cut(s)	238, 373
NspI	RCATGY	1 cut(s)	238
OliI	CACNNNNGTG	1 cut(s)	85
PaeI	GCATGC	1 cut(s)	238
PflFI	GACNNNGTC	1 cut(s)	269
PkrI	GCNGC	2 cut(s)	133, 298
PleI	GAGTC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	35
PstI	CTGCAG	1 cut(s)	391
PsuI	RGATCY	1 cut(s)	244
PsyI	GACNNNGTC	1 cut(s)	269
RsaI	GTAC	2 cut(s)	101, 329
RsaNI	GTAC	2 cut(s)	100, 328
RseI	CAYNNNNRTG	2 cut(s)	68, 85
SatI	GCNGC	2 cut(s)	132, 297
Sau3AI	GATC	2 cut(s)	72, 244
Sau96I	GGNCC	1 cut(s)	35
SchI	GAGTC	1 cut(s)	171
SduI	GDGCHC	2 cut(s)	82, 166
SetI	ASST	4 cut(s)	12, 85, 232, 285
SfaNI	GCATC	2 cut(s)	72, 279
SfcI	CTRYAG	1 cut(s)	387
SmiMI	CAYNNNNRTG	2 cut(s)	68, 85
SphI	GCATGC	1 cut(s)	238
SsiI	CCGC	3 cut(s)	131, 174, 268
SspMI	CTAG	2 cut(s)	42, 197
TaaI	ACNGT	1 cut(s)	187
TaiI	ACGT	3 cut(s)	12, 85, 285
TaqI	TCGA	1 cut(s)	285
TatI	WGTACW	1 cut(s)	99
TauI	GCSGC	1 cut(s)	134
TscAI	CASTG	2 cut(s)	92, 340
TseI	GCWGC	1 cut(s)	296
TspDTI	ATGAA	2 cut(s)	372, 386
TspGWI	ACGGA	4 cut(s)	137, 157, 166, 236
TspRI	CASTG	2 cut(s)	92, 340
Tth111I	GACNNNGTC	1 cut(s)	269
XceI	RCATGY	1 cut(s)	238
XspI	CTAG	2 cut(s)	42, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.