Rmu_sc0005601.1_g000004

Formiminotransferase domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005601.1
Physical Location & Seq
Forward (+)
3677 .. 6230
2554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005601.1_g000004.1.cds

Sequence Viewer

Length: 1128 bp
atgcttggttgctgcaaggtgtacatatctgaaagcagaaataggcttgcactggagtcaattgagcgagctgctaagcgattctcggaagcacccgttgtcaataagtttgaagatgaaacttacaacagagttggctacactcttgtctctaagctggctccaaagccatctggggacccttgtcccttgaggatggctgtccttgccatggttaaggctgcttttgaaaccattgactttgagtcgcactgtggaagtcatccccggattggagttgtggatcatatatgctttcacccccttcttggtgcttcgttggaacagatggctggtgttgcaaactccttagcggcagatgttggctctagtcttcaagttcctacatttctatatggagctgcccatgaagagaggagggcacttgattcaattagaagagagctcggttacttcaagccaaactctagtggagaacagtgggttgggggtccaaaatcggaatacttggcactgaagccagacaaaggtccccctaaagtgactcaagagaaaggtgtcattgtgattggagcaacccagtgggtggataattataacgtccctgtccactctactgatattgctgccgttcgtagaatttcgaaacgtgtgagtggcagaggaggtggacttccttcagtccaagcaatggcccttgcgcatggtgaatctgtcacggaggtagcttgcaatttgttggaaccacaggaagtgggaggagatagggttcagcttgaagttgagaggcttgcaaaagaagaaggtttgacagtggggaagggctacttcactgatctttctcaagaaaaattaatcgaaagaggcggcgtagattctgaatcgatggcggtgaggattgtgaggcgctggatcgagacaatgcagttttgtggtggcgtggagcgcgaagatctaggtcgtggcctggcacgtacgacatggcgtctggcagatggttgtgggcctggaccgagcttgcttgatgggctatgggtggaactcttccttcagaggctcttgggctcagtaaattgggctggagttgggtgtggactctctttgtgggttcgcattgggctaggctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

375

Amino Acids

40.72

Weight (kDa)

6.42

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 597
Acc16I TGCGCA 1 cut(s) 702
AccB7I CCANNNNNTGG 2 cut(s) 586, 691
AccII CGCG 1 cut(s) 948
AciI CCGC 3 cut(s) 353, 867, 890
AclWI GGATC 2 cut(s) 291, 920
AcsI RAATTY 1 cut(s) 639
AcuI CTGAAG 3 cut(s) 536, 663, 1034
AcyI GRCGYC 1 cut(s) 985
AfaI GTAC 2 cut(s) 23, 976
AfiI CCNNNNNNNGG 6 cut(s) 211, 272, 308, 527, 586, 691
AflIII ACRYGT 1 cut(s) 649
AgsI TTSAA 6 cut(s) 113, 230, 377, 432, 457, 779
AhdI GACNNNNNGTC 2 cut(s) 244, 984
AjnI CCWGG 2 cut(s) 966, 1006
AjuI GAANNNNNNNTTGG 2 cut(s) 468, 500
AloI GAACNNNNNNTCC 2 cut(s) 753, 785
AluBI AGCT 7 cut(s) 71, 157, 401, 445, 728, 775, 1017
AluI AGCT 7 cut(s) 71, 157, 401, 445, 728, 775, 1017
Alw21I GWGCWC 1 cut(s) 447
Alw26I GTCTC 2 cut(s) 154, 911
AlwI GGATC 2 cut(s) 291, 920
AoxI GGCC 3 cut(s) 693, 964, 1004
ApeKI GCWGC 5 cut(s) 12, 71, 221, 401, 626
ApoI RAATTY 1 cut(s) 639
AseI ATTAAT 1 cut(s) 854
AspLEI GCGC 3 cut(s) 703, 909, 948
AspS9I GGNCC 6 cut(s) 178, 491, 530, 694, 1004, 1010
AsuC2I CCSGG 1 cut(s) 268
AsuHPI GGTGA 3 cut(s) 290, 719, 904
AsuII TTCGAA 1 cut(s) 644
AvaII GGWCC 4 cut(s) 178, 491, 530, 1010
BaeGI GKGCMC 1 cut(s) 424
BanII GRGCYC 2 cut(s) 447, 1067
BbsI GAAGAC 1 cut(s) 365
Bbv12I GWGCWC 1 cut(s) 447
BbvI GCAGC 4 cut(s) 58, 208, 388, 613
BccI CCATC 6 cut(s) 178, 190, 322, 880, 989, 1019
BceAI ACGGC 1 cut(s) 614
BciT130I CCWGG 2 cut(s) 968, 1008
BcnI CCSGG 1 cut(s) 268
BcoDI GTCTC 2 cut(s) 154, 911
BfaI CTAG 5 cut(s) 369, 468, 956, 1121, 1126
BfoI RGCGCY 1 cut(s) 910
BglII AGATCT 1 cut(s) 952
BisI GCNGC 7 cut(s) 13, 72, 222, 354, 402, 627, 868
BlpI GCTNAGC 1 cut(s) 75
BlsI GCNGC 7 cut(s) 14, 73, 223, 355, 403, 628, 869
Bme1390I CCNGG 3 cut(s) 268, 968, 1008
Bme18I GGWCC 4 cut(s) 178, 491, 530, 1010
BmeRI GACNNNNNGTC 2 cut(s) 244, 984
BmgT120I GGNCC 6 cut(s) 178, 491, 530, 694, 1004, 1010
BmiI GGNNCC 6 cut(s) 162, 179, 180, 492, 532, 744
BmrFI CCNGG 3 cut(s) 268, 968, 1008
BmrI ACTGGG 1 cut(s) 574
BmuI ACTGGG 1 cut(s) 574
BoxI GACNNNNGTC 2 cut(s) 183, 528
BpiI GAAGAC 1 cut(s) 365
BpmI CTGGAG 2 cut(s) 74, 1101
Bpu10I CCTNAGC 1 cut(s) 349
Bpu1102I GCTNAGC 1 cut(s) 75
Bpu14I TTCGAA 1 cut(s) 644
BpuEI CTTGAG 3 cut(s) 211, 531, 828
BpuMI CCSGG 1 cut(s) 268
Bsa29I ATCGAT 1 cut(s) 884
BsaAI YACGTR 1 cut(s) 974
BsaHI GRCGYC 1 cut(s) 985
BsaJI CCNNGG 2 cut(s) 210, 266
BsaXI ACNNNNNCTCC 2 cut(s) 753, 783
Bsc4I CCNNNNNNNGG 6 cut(s) 211, 272, 308, 527, 586, 691
Bse1I ACTGG 2 cut(s) 57, 580
Bse3DI GCAATG 1 cut(s) 696
BseBI CCWGG 2 cut(s) 968, 1008
BseCI ATCGAT 1 cut(s) 884
BseDI CCNNGG 2 cut(s) 210, 266
BseGI GGATG 2 cut(s) 201, 262
BseLI CCNNNNNNNGG 6 cut(s) 211, 272, 308, 527, 586, 691
BseMI GCAATG 1 cut(s) 696
BseMII CTCAG 1 cut(s) 1080
BseNI ACTGG 2 cut(s) 57, 580
BseRI GAGGAG 3 cut(s) 430, 678, 774
BseSI GKGCMC 1 cut(s) 424
BseXI GCAGC 4 cut(s) 58, 208, 388, 613
Bsh1236I CGCG 1 cut(s) 948
BshFI GGCC 3 cut(s) 695, 966, 1006
BshVI ATCGAT 1 cut(s) 884
BsiHKAI GWGCWC 1 cut(s) 447
BsiSI CCGG 1 cut(s) 268
BsiWI CGTACG 1 cut(s) 974
BslFI GGGAC 4 cut(s) 171, 191, 516, 587
BslI CCNNNNNNNGG 6 cut(s) 211, 272, 308, 527, 586, 691
BsmAI GTCTC 2 cut(s) 154, 911
BsmFI GGGAC 4 cut(s) 171, 191, 516, 587
BsnI GGCC 3 cut(s) 695, 966, 1006
Bsp119I TTCGAA 1 cut(s) 644
Bsp1286I GDGCHC 3 cut(s) 424, 447, 1067
Bsp1407I TGTACA 1 cut(s) 21
Bsp143I GATC 4 cut(s) 283, 835, 912, 952
Bsp1720I GCTNAGC 1 cut(s) 75
Bsp19I CCATGG 1 cut(s) 210
BspACI CCGC 3 cut(s) 353, 867, 890
BspANI GGCC 3 cut(s) 695, 966, 1006
BspCNI CTCAG 1 cut(s) 1079
BspDI ATCGAT 1 cut(s) 884
BspFNI CGCG 1 cut(s) 948
BspLI GGNNCC 6 cut(s) 162, 179, 180, 492, 532, 744
BspPI GGATC 2 cut(s) 291, 920
BspT104I TTCGAA 1 cut(s) 644
BsrDI GCAATG 1 cut(s) 696
BsrGI TGTACA 1 cut(s) 21
BsrI ACTGG 2 cut(s) 57, 580
BssECI CCNNGG 2 cut(s) 210, 266
BssMI GATC 4 cut(s) 283, 835, 912, 952
BssNI GRCGYC 1 cut(s) 985
BssT1I CCWWGG 1 cut(s) 210
Bst2UI CCWGG 2 cut(s) 968, 1008
Bst4CI ACNGT 3 cut(s) 254, 480, 814
Bst6I CTCTTC 3 cut(s) 405, 433, 1049
BstACI GRCGYC 1 cut(s) 985
BstAUI TGTACA 1 cut(s) 21
BstBAI YACGTR 1 cut(s) 974
BstBI TTCGAA 1 cut(s) 644
BstC8I GCNNGC 6 cut(s) 48, 69, 159, 730, 792, 1019
BstDEI CTNAG 4 cut(s) 75, 153, 349, 1066
BstDSI CCRYGG 1 cut(s) 210
BstF5I GGATG 2 cut(s) 201, 262
BstFNI CGCG 1 cut(s) 948
BstH2I RGCGCY 1 cut(s) 910
BstHHI GCGC 3 cut(s) 703, 909, 948
BstKTI GATC 4 cut(s) 286, 838, 915, 955
BstMAI GTCTC 2 cut(s) 154, 911
BstMBI GATC 4 cut(s) 283, 835, 912, 952
BstMWI GCNNNNNNNGC 4 cut(s) 206, 338, 945, 1027
BstNI CCWGG 2 cut(s) 968, 1008
BstPAI GACNNNNGTC 2 cut(s) 183, 528
BstSCI CCNGG 3 cut(s) 266, 966, 1006
BstSLI GKGCMC 1 cut(s) 424
BstUI CGCG 1 cut(s) 948
BstV1I GCAGC 4 cut(s) 58, 208, 388, 613
BstV2I GAAGAC 1 cut(s) 365
BstX2I RGATCY 1 cut(s) 952
BstYI RGATCY 1 cut(s) 952
Bsu15I ATCGAT 1 cut(s) 884
BsuRI GGCC 3 cut(s) 695, 966, 1006
BsuTUI ATCGAT 1 cut(s) 884
BtgI CCRYGG 1 cut(s) 210
BtsCI GGATG 2 cut(s) 201, 262
BtsIMutI CAGTG 7 cut(s) 50, 250, 485, 512, 587, 819, 831
Cac8I GCNNGC 6 cut(s) 48, 69, 159, 730, 792, 1019
CfoI GCGC 3 cut(s) 703, 909, 948
Cfr13I GGNCC 6 cut(s) 178, 491, 530, 694, 1004, 1010
ClaI ATCGAT 1 cut(s) 884
CseI GACGC 1 cut(s) 974
Csp6I GTAC 2 cut(s) 22, 975
CviAII CATG 4 cut(s) 211, 407, 704, 981
CviQI GTAC 2 cut(s) 22, 975
DdeI CTNAG 4 cut(s) 75, 153, 349, 1066
DpnI GATC 4 cut(s) 285, 837, 914, 954
DpnII GATC 4 cut(s) 283, 835, 912, 952
DriI GACNNNNNGTC 2 cut(s) 244, 984
Eam1104I CTCTTC 3 cut(s) 405, 433, 1049
Eam1105I GACNNNNNGTC 2 cut(s) 244, 984
EarI CTCTTC 3 cut(s) 405, 433, 1049
Ecl136II GAGCTC 1 cut(s) 445
Eco130I CCWWGG 1 cut(s) 210
Eco24I GRGCYC 2 cut(s) 447, 1067
Eco47I GGWCC 4 cut(s) 178, 491, 530, 1010
Eco53kI GAGCTC 1 cut(s) 445
Eco57I CTGAAG 3 cut(s) 536, 663, 1034
EcoICRI GAGCTC 1 cut(s) 445
EcoO109I RGGNCCY 2 cut(s) 178, 530
EcoRII CCWGG 2 cut(s) 966, 1006
EcoT14I CCWWGG 1 cut(s) 210
EcoT38I GRGCYC 2 cut(s) 447, 1067
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 4 cut(s) 214, 410, 707, 984
FalI AAGNNNNNCTT 2 cut(s) 812, 844
FaqI GGGAC 4 cut(s) 171, 191, 516, 587
FatI CATG 4 cut(s) 210, 406, 703, 980
Fnu4HI GCNGC 7 cut(s) 13, 72, 222, 354, 402, 627, 868
FokI GGATG 2 cut(s) 208, 249
FriOI GRGCYC 2 cut(s) 447, 1067
Fsp4HI GCNGC 7 cut(s) 13, 72, 222, 354, 402, 627, 868
FspBI CTAG 5 cut(s) 369, 468, 956, 1121, 1126
FspI TGCGCA 1 cut(s) 702
GlaI GCGC 3 cut(s) 702, 908, 947
GluI GCNGC 7 cut(s) 13, 72, 222, 354, 402, 627, 868
GsuI CTGGAG 2 cut(s) 74, 1101
HaeII RGCGCY 1 cut(s) 910
HaeIII GGCC 3 cut(s) 695, 966, 1006
HapII CCGG 1 cut(s) 268
HgaI GACGC 1 cut(s) 974
HhaI GCGC 3 cut(s) 703, 909, 948
Hin1I GRCGYC 1 cut(s) 985
Hin1II CATG 4 cut(s) 214, 410, 707, 984
Hin6I GCGC 3 cut(s) 701, 907, 946
HinP1I GCGC 3 cut(s) 701, 907, 946
HinfI GANTC 9 cut(s) 56, 81, 245, 428, 544, 710, 875, 881, 1095
HpaII CCGG 1 cut(s) 268
HphI GGTGA 3 cut(s) 290, 719, 904
Hpy166II GTNNAC 4 cut(s) 22, 610, 671, 1094
Hpy188I TCNGA 5 cut(s) 31, 88, 502, 880, 1053
Hpy188III TCNNGA 3 cut(s) 548, 845, 916
Hpy8I GTNNAC 4 cut(s) 22, 610, 671, 1094
HpyAV CCTTC 5 cut(s) 314, 687, 797, 814, 1058
HpyCH4III ACNGT 3 cut(s) 254, 480, 814
HpyCH4IV ACGT 3 cut(s) 600, 649, 973
HpyCH4V TGCA 6 cut(s) 15, 50, 341, 732, 794, 925
HpyF10VI GCNNNNNNNGC 4 cut(s) 206, 338, 945, 1027
HpyF3I CTNAG 4 cut(s) 75, 153, 349, 1066
HpySE526I ACGT 3 cut(s) 600, 649, 973
Hsp92I GRCGYC 1 cut(s) 985
Hsp92II CATG 4 cut(s) 214, 410, 707, 984
HspAI GCGC 3 cut(s) 701, 907, 946
KflI GGGWCCC 1 cut(s) 178
Kzo9I GATC 4 cut(s) 283, 835, 912, 952
LmnI GCTCC 4 cut(s) 166, 398, 572, 943
Lsp1109I GCAGC 4 cut(s) 58, 208, 388, 613
MaeI CTAG 5 cut(s) 369, 468, 956, 1121, 1126
MaeII ACGT 3 cut(s) 600, 649, 973
MaeIII GTNAC 3 cut(s) 449, 541, 715
MalI GATC 4 cut(s) 285, 837, 914, 954
MboI GATC 4 cut(s) 283, 835, 912, 952
MboII GAAGA 7 cut(s) 125, 365, 422, 450, 812, 962, 1036
MfeI CAATTG 1 cut(s) 60
MflI RGATCY 1 cut(s) 952
MhlI GDGCHC 3 cut(s) 424, 447, 1067
MluCI AATT 7 cut(s) 60, 432, 592, 639, 733, 851, 1072
MlyI GAGTC 4 cut(s) 65, 254, 538, 1089
MmeI TCCRAC 2 cut(s) 300, 720
MseI TTAA 2 cut(s) 216, 854
MspI CCGG 1 cut(s) 268
MspR9I CCNGG 3 cut(s) 268, 968, 1008
MunI CAATTG 1 cut(s) 60
MvaI CCWGG 2 cut(s) 968, 1008
MvnI CGCG 1 cut(s) 948
MwoI GCNNNNNNNGC 4 cut(s) 206, 338, 945, 1027
NciI CCSGG 1 cut(s) 268
NcoI CCATGG 1 cut(s) 210
NdeII GATC 4 cut(s) 283, 835, 912, 952
NlaIII CATG 4 cut(s) 214, 410, 707, 984
NlaIV GGNNCC 6 cut(s) 162, 179, 180, 492, 532, 744
NmuCI GTSAC 2 cut(s) 541, 715
NsbI TGCGCA 1 cut(s) 702
NspV TTCGAA 1 cut(s) 644
PfeI GAWTC 5 cut(s) 81, 428, 710, 875, 881
Pfl23II CGTACG 1 cut(s) 974
PflMI CCANNNNNTGG 2 cut(s) 586, 691
PkrI GCNGC 7 cut(s) 14, 73, 223, 355, 403, 628, 869
PleI GAGTC 4 cut(s) 64, 253, 538, 1089
PpsI GAGTC 4 cut(s) 64, 253, 538, 1089
Ppu21I YACGTR 1 cut(s) 974
PpuMI RGGWCCY 2 cut(s) 178, 530
PshAI GACNNNNGTC 2 cut(s) 183, 528
PshBI ATTAAT 1 cut(s) 854
PsiI TTATAA 1 cut(s) 597
Psp124BI GAGCTC 1 cut(s) 447
Psp5II RGGWCCY 2 cut(s) 178, 530
Psp6I CCWGG 2 cut(s) 966, 1006
PspGI CCWGG 2 cut(s) 966, 1006
PspLI CGTACG 1 cut(s) 974
PspN4I GGNNCC 6 cut(s) 162, 179, 180, 492, 532, 744
PspPI GGNCC 6 cut(s) 178, 491, 530, 694, 1004, 1010
PspPPI RGGWCCY 2 cut(s) 178, 530
PsuI RGATCY 1 cut(s) 952
RsaI GTAC 2 cut(s) 23, 976
RsaNI GTAC 2 cut(s) 22, 975
SacI GAGCTC 1 cut(s) 447
SaqAI TTAA 2 cut(s) 216, 854
SatI GCNGC 7 cut(s) 13, 72, 222, 354, 402, 627, 868
Sau3AI GATC 4 cut(s) 283, 835, 912, 952
Sau96I GGNCC 6 cut(s) 178, 491, 530, 694, 1004, 1010
SchI GAGTC 4 cut(s) 65, 254, 538, 1089
ScrFI CCNGG 3 cut(s) 268, 968, 1008
SduI GDGCHC 3 cut(s) 424, 447, 1067
SfuI TTCGAA 1 cut(s) 644
SinI GGWCC 4 cut(s) 178, 491, 530, 1010
SmlI CTYRAG 3 cut(s) 190, 546, 843
SmoI CTYRAG 3 cut(s) 190, 546, 843
Sse9I AATT 7 cut(s) 60, 432, 592, 639, 733, 851, 1072
SsiI CCGC 3 cut(s) 353, 867, 890
SspMI CTAG 5 cut(s) 369, 468, 956, 1121, 1126
SstI GAGCTC 1 cut(s) 447
StyD4I CCNGG 3 cut(s) 266, 966, 1006
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 3 cut(s) 254, 480, 814
TaiI ACGT 3 cut(s) 603, 652, 976
TaqI TCGA 4 cut(s) 644, 858, 884, 915
TaqII GACCGA 1 cut(s) 1027
TasI AATT 7 cut(s) 60, 432, 592, 639, 733, 851, 1072
TatI WGTACW 1 cut(s) 21
TauI GCSGC 2 cut(s) 356, 870
TfiI GAWTC 5 cut(s) 81, 428, 710, 875, 881
Tru1I TTAA 2 cut(s) 216, 854
Tru9I TTAA 2 cut(s) 216, 854
TscAI CASTG 7 cut(s) 57, 257, 485, 519, 587, 819, 838
TseFI GTSAC 2 cut(s) 541, 715
TseI GCWGC 5 cut(s) 12, 71, 221, 401, 626
Tsp45I GTSAC 2 cut(s) 541, 715
TspDTI ATGAA 2 cut(s) 132, 423
TspGWI ACGGA 1 cut(s) 734
TspRI CASTG 7 cut(s) 57, 257, 485, 519, 587, 819, 838
Van91I CCANNNNNTGG 2 cut(s) 586, 691
VpaK11BI GGWCC 4 cut(s) 178, 491, 530, 1010
VspI ATTAAT 1 cut(s) 854
XapI RAATTY 1 cut(s) 639
XspI CTAG 5 cut(s) 369, 468, 956, 1121, 1126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.