Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001831

Physical Location & Seq

Genomic Coordinates Forward (+)

78998139 .. 79000215

Gene Structure 2077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG573800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGCTGCTCTGCTGCAAGCTCTTCATATCTGAATCGCGTAACCTCGCTGTGCTCGACGCCATTGAACGTGCCGCTAGGCTTGACCCGGAGTCTGTCATTGTTAACAAATTTGAGGACCGAGCTTACAATAGGGTCCGGTATACTATTGTGTCATATGTTCTGCATGATAGCACAGGAAGTGCTATATACAGCCCCTTGCAGCAAACTGTACTAGCCATGGCTGAGGCAGCGTTCGGGGCCATTAACCTCGAGCAGCATTCAGGGGCTCACCCTCGCTTAGGGGTTGTCGATGACATTGTGTTCCACCCTTTGGCAAGAGCATCTCTAGATGAAGCAGCTTGGCTTGCTAAGGCTGTGGCAGTGGACATTGGCAATAAATTCCAAGTTCCAGTATATCTATATGCTGCAGCACACCCTACAGGCAAGGCTCTTGACACCATTAGGCGTGAGCTTGGCTACTACAGGCCAAATTTCATGGGCAACCAATGGGCAGGATGGACCATGCCCGGAGTGCTCCAAGAAAAACCCGATGAAGGCCCGACAACTGTATCTCCTACTCGTGGCATTGCAATGATCGGGGCACGCCCATGGGTTGCCTTGTACAACATACCAATATTGTCCACCGATGTTGCAGCCACTCGAAGGATTGCAAGAATGGTGAGTGCTCGAGGGGGAGGTCTCCCAACTGTGCAAACACTAGGTCTGGTTCATGGTGAGGACTCCACAGAGATAGCTTGTATGCTCTTAGAGCCCAACCAGATTGGAGCGGAGAGAGTCCAGAACCGGGTTGAGATGCTAGCAGCAGAAGAAGGGTTGTACGTAGAGAAGGGTTACTTCACTGATCACTCACCAGATATGGTAATTGAAAAGTACATGAAACTAATATCTGCAGACAGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005790 GO:0005793 GO:0005794 GO:0005829 GO:0005886 GO:0006082 GO:0006520 GO:0006547 GO:0006548 GO:0006725 GO:0006807 GO:0006996 GO:0007010 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009987 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016054 GO:0016740 GO:0016741 GO:0016742 GO:0016829 GO:0016840 GO:0016841 GO:0019439 GO:0019752 GO:0030407 GO:0030409 GO:0030412 GO:0030868 GO:0031090 GO:0031984 GO:0034641 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046483 GO:0046700 GO:0052803 GO:0052805 GO:0071704 GO:0071840 GO:0071944 GO:0097425 GO:0098588 GO:0098791 GO:0098827 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FTCD_N

Protein Analysis

300

Amino Acids

33.01

Weight (kDa)

5.84

Isoelectric Point (pI)

35.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FTCD_N	PF07837	2 - 195	4.9e-52	Formiminotransferase domain, N-terminal subdomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20830 AT2G20830 AT2G20830 AT2G20830 AT2G20830 AT2G20830
fragaria_vesca	FvH4_6g44860 FvH4_6g44860 FvH4_6g44870 FvH4_6g44870 FvH4_6g44870
malus_domestica	MD09G1092400.v1.1 MD09G1092500.v1.1 MD17G1082500.v1.1
prunus_persica	Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232700_v2.0.a1 Prupe.3G232700_v2.0.a1
pyrus_communis	pycom09g01780 pycom09g01790 pycom17g08050 pycom17g08060
rosa_chinensis	RchiOBHm_Chr2g0162051 RchiOBHm_Chr2g0162061
rosa_laevigata	RLG00000021319
rosa_multiflora	Rmu_co8364399.1_g000001 Rmu_sc0005601.1_g000004 Rmu_sc0005601.1_g000005 Rmu_sc0026966.1_g000002
rosa_roxburghii	Rroxscaffold_2G00088340 Rroxscaffold_2G00088350
rosa_rugosa	Rorug02G0494300
rosa_samantha	Rh2AG560400 Rh2AG560500 Rh2BG573700 Rh2BG573800 Rh2CG544000 Rh2CG544100 Rh2DG583700 Rh2DG583800
rosa_wichuraiana	Rw2G046410 Rw2G046420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	310
AccBSI	CCGCTC	1 cut(s)	767
AccI	GTMKAC	1 cut(s)	140
AccII	CGCG	1 cut(s)	37
AciI	CCGC	2 cut(s)	72, 767
AcsI	RAATTY	3 cut(s)	107, 377, 469
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	4 cut(s)	210, 602, 818, 872
AfiI	CCNNNNNNNGG	6 cut(s)	278, 310, 533, 560, 642, 784
AgsI	TTSAA	2 cut(s)	65, 866
AhdI	GACNNNNNGTC	1 cut(s)	88
AluBI	AGCT	5 cut(s)	19, 122, 338, 451, 734
AluI	AGCT	5 cut(s)	19, 122, 338, 451, 734
Alw21I	GWGCWC	3 cut(s)	54, 516, 667
Alw26I	GTCTC	1 cut(s)	683
Ama87I	CYCGRG	2 cut(s)	248, 666
AoxI	GGCC	3 cut(s)	237, 464, 535
ApoI	RAATTY	3 cut(s)	107, 377, 469
ArsI	GACNNNNNNTTYG	2 cut(s)	685, 717
AspS9I	GGNCC	5 cut(s)	115, 133, 237, 498, 536
AsuC2I	CCSGG	3 cut(s)	86, 507, 785
AsuHPI	GGTGA	4 cut(s)	260, 670, 725, 840
AsuNHI	GCTAGC	1 cut(s)	796
AvaI	CYCGRG	2 cut(s)	248, 666
AvaII	GGWCC	3 cut(s)	115, 133, 498
BaeGI	GKGCMC	1 cut(s)	583
BaeI	ACNNNNGTAYC	2 cut(s)	531, 564
BanII	GRGCYC	2 cut(s)	268, 753
BauI	CACGAG	1 cut(s)	558
Bbv12I	GWGCWC	3 cut(s)	54, 516, 667
BbvCI	CCTCAGC	1 cut(s)	222
BbvI	GCAGC	8 cut(s)	211, 239, 265, 347, 391, 419, 644, 812
BccI	CCATC	1 cut(s)	489
BclI	TGATCA	1 cut(s)	841
BcnI	CCSGG	3 cut(s)	86, 507, 785
BcoDI	GTCTC	1 cut(s)	683
BfaI	CTAG	5 cut(s)	75, 212, 326, 698, 797
BfmI	CTRYAG	4 cut(s)	405, 417, 460, 888
Bme1390I	CCNGG	3 cut(s)	86, 507, 785
Bme18I	GGWCC	3 cut(s)	115, 133, 498
BmeRI	GACNNNNNGTC	1 cut(s)	88
BmeT110I	CYCGRG	2 cut(s)	248, 666
BmgT120I	GGNCC	5 cut(s)	115, 133, 237, 498, 536
BmiI	GGNNCC	2 cut(s)	134, 238
BmrFI	CCNGG	3 cut(s)	86, 507, 785
BmsI	GCATC	2 cut(s)	329, 783
BmtI	GCTAGC	1 cut(s)	800
Bpu10I	CCTNAGC	3 cut(s)	222, 277, 348
BpuMI	CCSGG	3 cut(s)	86, 507, 785
BsaAI	YACGTR	1 cut(s)	820
BsaHI	GRCGYC	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	683
BsaJI	CCNNGG	2 cut(s)	216, 587
BsaWI	WCCGGW	1 cut(s)	135
BsaXI	ACNNNNNCTCC	2 cut(s)	535, 565
Bsc4I	CCNNNNNNNGG	6 cut(s)	278, 310, 533, 560, 642, 784
Bse1I	ACTGG	1 cut(s)	389
Bse3DI	GCAATG	2 cut(s)	564, 576
BseDI	CCNNGG	2 cut(s)	216, 587
BseGI	GGATG	1 cut(s)	500
BseLI	CCNNNNNNNGG	6 cut(s)	278, 310, 533, 560, 642, 784
BseMI	GCAATG	2 cut(s)	564, 576
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	389
BseSI	GKGCMC	1 cut(s)	583
BseXI	GCAGC	8 cut(s)	211, 239, 265, 347, 391, 419, 644, 812
Bsh1236I	CGCG	1 cut(s)	37
BshFI	GGCC	3 cut(s)	239, 466, 537
BsiHKAI	GWGCWC	3 cut(s)	54, 516, 667
BsiHKCI	CYCGRG	2 cut(s)	248, 666
BsiSI	CCGG	4 cut(s)	86, 136, 507, 784
BslI	CCNNNNNNNGG	6 cut(s)	278, 310, 533, 560, 642, 784
BsmAI	GTCTC	1 cut(s)	683
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	3 cut(s)	239, 466, 537
Bso31I	GGTCTC	1 cut(s)	683
BsoBI	CYCGRG	2 cut(s)	248, 666
Bsp1286I	GDGCHC	6 cut(s)	54, 268, 516, 583, 667, 753
Bsp1407I	TGTACA	1 cut(s)	600
Bsp143I	GATC	2 cut(s)	573, 841
Bsp19I	CCATGG	2 cut(s)	216, 587
BspACI	CCGC	2 cut(s)	72, 767
BspANI	GGCC	3 cut(s)	239, 466, 537
BspCNI	CTCAG	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	37
BspLI	GGNNCC	2 cut(s)	134, 238
BspMAI	CTGCAG	2 cut(s)	409, 892
BspOI	GCTAGC	1 cut(s)	800
BspQI	GCTCTTC	1 cut(s)	26
BspTNI	GGTCTC	1 cut(s)	683
BsrBI	CCGCTC	1 cut(s)	767
BsrDI	GCAATG	2 cut(s)	564, 576
BsrGI	TGTACA	1 cut(s)	600
BsrI	ACTGG	1 cut(s)	389
BssECI	CCNNGG	2 cut(s)	216, 587
BssMI	GATC	2 cut(s)	573, 841
BssNAI	GTATAC	1 cut(s)	141
BssNI	GRCGYC	1 cut(s)	57
BssSI	CACGAG	1 cut(s)	558
BssT1I	CCWWGG	2 cut(s)	216, 587
Bst1107I	GTATAC	1 cut(s)	141
Bst2BI	CACGAG	1 cut(s)	558
Bst4CI	ACNGT	3 cut(s)	208, 547, 688
Bst6I	CTCTTC	1 cut(s)	26
BstACI	GRCGYC	1 cut(s)	57
BstAUI	TGTACA	1 cut(s)	600
BstBAI	YACGTR	1 cut(s)	820
BstC8I	GCNNGC	4 cut(s)	17, 345, 583, 798
BstDEI	CTNAG	4 cut(s)	222, 277, 348, 745
BstDSI	CCRYGG	2 cut(s)	216, 587
BstENI	CCTNNNNNAGG	1 cut(s)	276
BstF5I	GGATG	1 cut(s)	500
BstFNI	CGCG	1 cut(s)	37
BstKTI	GATC	2 cut(s)	576, 844
BstMAI	GTCTC	1 cut(s)	683
BstMBI	GATC	2 cut(s)	573, 841
BstMWI	GCNNNNNNNGC	5 cut(s)	227, 236, 344, 511, 748
BstSCI	CCNGG	3 cut(s)	84, 505, 783
BstSFI	CTRYAG	4 cut(s)	405, 417, 460, 888
BstSLI	GKGCMC	1 cut(s)	583
BstSNI	TACGTA	1 cut(s)	820
BstUI	CGCG	1 cut(s)	37
BstV1I	GCAGC	8 cut(s)	211, 239, 265, 347, 391, 419, 644, 812
BstZ17I	GTATAC	1 cut(s)	141
BsuRI	GGCC	3 cut(s)	239, 466, 537
BtgI	CCRYGG	2 cut(s)	216, 587
BtsCI	GGATG	1 cut(s)	500
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	2 cut(s)	366, 837
Cac8I	GCNNGC	4 cut(s)	17, 345, 583, 798
Cfr13I	GGNCC	5 cut(s)	115, 133, 237, 498, 536
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	4 cut(s)	209, 601, 817, 871
CspCI	CAANNNNNGTGG	2 cut(s)	610, 645
CviAII	CATG	7 cut(s)	164, 217, 475, 502, 588, 710, 874
CviQI	GTAC	4 cut(s)	209, 601, 817, 871
DdeI	CTNAG	4 cut(s)	222, 277, 348, 745
DpnI	GATC	2 cut(s)	575, 843
DpnII	GATC	2 cut(s)	573, 841
DriI	GACNNNNNGTC	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	26
Eam1105I	GACNNNNNGTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	26
Eco105I	TACGTA	1 cut(s)	820
Eco130I	CCWWGG	2 cut(s)	216, 587
Eco24I	GRGCYC	2 cut(s)	268, 753
Eco31I	GGTCTC	1 cut(s)	683
Eco47I	GGWCC	3 cut(s)	115, 133, 498
Eco88I	CYCGRG	2 cut(s)	248, 666
EcoNI	CCTNNNNNAGG	1 cut(s)	276
EcoT14I	CCWWGG	2 cut(s)	216, 587
EcoT38I	GRGCYC	2 cut(s)	268, 753
ErhI	CCWWGG	2 cut(s)	216, 587
FaeI	CATG	7 cut(s)	167, 220, 478, 505, 591, 713, 877
FalI	AAGNNNNNCTT	2 cut(s)	818, 850
FatI	CATG	7 cut(s)	163, 216, 474, 501, 587, 709, 873
FauNDI	CATATG	1 cut(s)	154
FbaI	TGATCA	1 cut(s)	841
FblI	GTMKAC	1 cut(s)	140
FokI	GGATG	1 cut(s)	507
FriOI	GRGCYC	2 cut(s)	268, 753
FspBI	CTAG	5 cut(s)	75, 212, 326, 698, 797
HaeIII	GGCC	3 cut(s)	239, 466, 537
HapII	CCGG	4 cut(s)	86, 136, 507, 784
HgaI	GACGC	1 cut(s)	65
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	7 cut(s)	167, 220, 478, 505, 591, 713, 877
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HinfI	GANTC	4 cut(s)	32, 89, 719, 774
HpaI	GTTAAC	1 cut(s)	103
HpaII	CCGG	4 cut(s)	86, 136, 507, 784
HphI	GGTGA	4 cut(s)	260, 670, 725, 840
Hpy166II	GTNNAC	4 cut(s)	103, 141, 364, 621
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	3 cut(s)	326, 431, 778
Hpy8I	GTNNAC	4 cut(s)	103, 141, 364, 621
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	4 cut(s)	527, 636, 803, 820
HpyCH4III	ACNGT	3 cut(s)	208, 547, 688
HpyCH4IV	ACGT	2 cut(s)	67, 819
HpyCH4V	TGCA	9 cut(s)	15, 163, 199, 407, 569, 632, 650, 691, 890
HpyF10VI	GCNNNNNNNGC	5 cut(s)	227, 236, 344, 511, 748
HpyF3I	CTNAG	4 cut(s)	222, 277, 348, 745
HpySE526I	ACGT	2 cut(s)	67, 819
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	7 cut(s)	167, 220, 478, 505, 591, 713, 877
Ksp22I	TGATCA	1 cut(s)	841
KspAI	GTTAAC	1 cut(s)	103
Kzo9I	GATC	2 cut(s)	573, 841
LguI	GCTCTTC	1 cut(s)	26
LmnI	GCTCC	2 cut(s)	519, 764
Lsp1109I	GCAGC	8 cut(s)	211, 239, 265, 347, 391, 419, 644, 812
LweI	GCATC	2 cut(s)	329, 783
MaeI	CTAG	5 cut(s)	75, 212, 326, 698, 797
MaeII	ACGT	2 cut(s)	67, 819
MaeIII	GTNAC	2 cut(s)	38, 830
MalI	GATC	2 cut(s)	575, 843
MbiI	CCGCTC	1 cut(s)	767
MboI	GATC	2 cut(s)	573, 841
MboII	GAAGA	2 cut(s)	13, 818
MhlI	GDGCHC	6 cut(s)	54, 268, 516, 583, 667, 753
MluCI	AATT	4 cut(s)	107, 377, 469, 861
MlyI	GAGTC	3 cut(s)	98, 713, 783
MnlI	CCTC	8 cut(s)	53, 106, 217, 257, 282, 662, 668, 709
MseI	TTAA	2 cut(s)	102, 243
MslI	CAYNNNNRTG	2 cut(s)	569, 586
MspI	CCGG	4 cut(s)	86, 136, 507, 784
MspR9I	CCNGG	3 cut(s)	86, 507, 785
Mva1269I	GAATGC	1 cut(s)	256
MvnI	CGCG	1 cut(s)	37
MwoI	GCNNNNNNNGC	5 cut(s)	227, 236, 344, 511, 748
NciI	CCSGG	3 cut(s)	86, 507, 785
NcoI	CCATGG	2 cut(s)	216, 587
NdeI	CATATG	1 cut(s)	154
NdeII	GATC	2 cut(s)	573, 841
NheI	GCTAGC	1 cut(s)	796
NlaIII	CATG	7 cut(s)	167, 220, 478, 505, 591, 713, 877
NlaIV	GGNNCC	2 cut(s)	134, 238
PaeR7I	CTCGAG	2 cut(s)	248, 666
PciSI	GCTCTTC	1 cut(s)	26
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PctI	GAATGC	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	32
PflMI	CCANNNNNTGG	1 cut(s)	310
PleI	GAGTC	3 cut(s)	97, 713, 782
PpsI	GAGTC	3 cut(s)	97, 713, 782
Ppu21I	YACGTR	1 cut(s)	820
PspN4I	GGNNCC	2 cut(s)	134, 238
PspPI	GGNCC	5 cut(s)	115, 133, 237, 498, 536
PspXI	VCTCGAGB	2 cut(s)	248, 666
PstI	CTGCAG	2 cut(s)	409, 892
RsaI	GTAC	4 cut(s)	210, 602, 818, 872
RsaNI	GTAC	4 cut(s)	209, 601, 817, 871
RseI	CAYNNNNRTG	2 cut(s)	569, 586
SapI	GCTCTTC	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	102, 243
Sau3AI	GATC	2 cut(s)	573, 841
Sau96I	GGNCC	5 cut(s)	115, 133, 237, 498, 536
SchI	GAGTC	3 cut(s)	98, 713, 783
ScrFI	CCNGG	3 cut(s)	86, 507, 785
SduI	GDGCHC	6 cut(s)	54, 268, 516, 583, 667, 753
SfaNI	GCATC	2 cut(s)	329, 783
SfcI	CTRYAG	4 cut(s)	405, 417, 460, 888
Sfr274I	CTCGAG	2 cut(s)	248, 666
SinI	GGWCC	3 cut(s)	115, 133, 498
SlaI	CTCGAG	2 cut(s)	248, 666
SmiMI	CAYNNNNRTG	2 cut(s)	569, 586
SmlI	CTYRAG	2 cut(s)	248, 666
SmoI	CTYRAG	2 cut(s)	248, 666
SnaBI	TACGTA	1 cut(s)	820
Sse9I	AATT	4 cut(s)	107, 377, 469, 861
SsiI	CCGC	2 cut(s)	72, 767
SspI	AATATT	1 cut(s)	615
SspMI	CTAG	5 cut(s)	75, 212, 326, 698, 797
StyD4I	CCNGG	3 cut(s)	84, 505, 783
StyI	CCWWGG	2 cut(s)	216, 587
TaaI	ACNGT	3 cut(s)	208, 547, 688
TaiI	ACGT	2 cut(s)	70, 822
TaqI	TCGA	5 cut(s)	54, 249, 288, 640, 667
TaqII	GACCGA	1 cut(s)	132
TasI	AATT	4 cut(s)	107, 377, 469, 861
TatI	WGTACW	3 cut(s)	208, 600, 870
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	2 cut(s)	102, 243
Tru9I	TTAA	2 cut(s)	102, 243
TscAI	CASTG	2 cut(s)	366, 844
TspDTI	ATGAA	6 cut(s)	13, 345, 463, 546, 698, 890
TspRI	CASTG	2 cut(s)	366, 844
Van91I	CCANNNNNTGG	1 cut(s)	310
VpaK11BI	GGWCC	3 cut(s)	115, 133, 498
XagI	CCTNNNNNAGG	1 cut(s)	276
XapI	RAATTY	3 cut(s)	107, 377, 469
XbaI	TCTAGA	1 cut(s)	325
XhoI	CTCGAG	2 cut(s)	248, 666
XmiI	GTMKAC	1 cut(s)	140
XspI	CTAG	5 cut(s)	75, 212, 326, 698, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.