Rroxscaffold_2G00088340

Formiminotransferase domain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
10300473 .. 10302924
2452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00088340.1

Sequence Viewer

Length: 957 bp
ATGGATTACAACACTGCTTGCAAGGACAAGAAGAAGAAAACCATAGACCAGTCCATGCTGCTCTGCTGCAAGCTCTTCATATCTGAATCGCGTAACCTCGCTGTGCTCGACGCCATTGAACGTGCCGCTAGGCTTGACCCGGAGTCTGTCATTGTTAACAAATTTGAGGACCGAGCTTACAATAGGGTCCGGTATACTATTGTGTCATATGTTCTGCATGATAGCACAGGAAGTGCTATATACAGCCCCTTGCAGCAAACTGTACTAGCCATGGCTGAGGCAGCATTTGGGGCCATTAACCTCGAGCAGCATTCAGGGGCTCACCCTCGCTTAGGGGTTGTCGATGACATTGTGTTCCACCCTTTGGCAAGAGCATCTCTAGATGAAGCAGCTTGGCTTGCTAAGGCTGTGGCAGTGGACATTGGCAATAAATTCCAAGTTCCAGTATATCTATATGCTGCAGCACACCCTACAGGCAAGGCTCTTGACACCATTAGGCGTGAGCTTGGCTACTACAGGCCAAATTTCATGGGCAACCAATGGGCAGGATGGACCATGCCCGGAGTGCTCCAAGAAAAACCCGATGAAGGCCCGACAACTGTATCTCCTACTCGTGGCATTGCAATGATCGGGGCACGCCCATGGGTTGCCTTGTACAACATACCAATATTGTCCACCGATGTTGCAGCCACTCGAAGGATTGCAAGAATGGTGAGTGCTCGAGGGGGAGGTCTCCCAACTGTGCAAACACTGGGTCTGGTTCATGGTGAGGACTCCACAGAGATAGCTTGTATGCTCTTAGAGCCCAACCAGATTGGAGCAGAGAGAGTCCAGACCCGGGTTGAGATGCTAGCAGCAGAAGAAGGGTTGTACGTAGAGAAGGGTTACTTCACTGATCACTCACCGGATATGGTGATTGAAAAGTATATGAAACTAATATCCGCAGACAGAAACTAG

Protein Analysis

318

Amino Acids

35.1

Weight (kDa)

6.19

Isoelectric Point (pI)

36.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FTCD_N PF07837 20 - 213 5.8e-52 Formiminotransferase domain, N-terminal subdomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 364
AccI GTMKAC 1 cut(s) 194
AccII CGCG 1 cut(s) 91
AciI CCGC 2 cut(s) 126, 942
AcsI RAATTY 3 cut(s) 161, 431, 523
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 3 cut(s) 264, 656, 872
AfiI CCNNNNNNNGG 6 cut(s) 332, 364, 587, 614, 696, 838
AgsI TTSAA 2 cut(s) 119, 920
AhdI GACNNNNNGTC 1 cut(s) 142
AluBI AGCT 5 cut(s) 73, 176, 392, 505, 788
AluI AGCT 5 cut(s) 73, 176, 392, 505, 788
Alw21I GWGCWC 3 cut(s) 108, 570, 721
Alw26I GTCTC 1 cut(s) 737
Ama87I CYCGRG 3 cut(s) 302, 720, 837
AoxI GGCC 3 cut(s) 291, 518, 589
ApoI RAATTY 3 cut(s) 161, 431, 523
ArsI GACNNNNNNTTYG 2 cut(s) 739, 771
AspS9I GGNCC 5 cut(s) 169, 187, 291, 552, 590
AsuC2I CCSGG 4 cut(s) 140, 561, 838, 839
AsuHPI GGTGA 5 cut(s) 314, 724, 779, 894, 925
AsuNHI GCTAGC 1 cut(s) 850
AvaI CYCGRG 3 cut(s) 302, 720, 837
AvaII GGWCC 3 cut(s) 169, 187, 552
BaeGI GKGCMC 1 cut(s) 637
BaeI ACNNNNGTAYC 2 cut(s) 585, 618
BanII GRGCYC 2 cut(s) 322, 807
BauI CACGAG 1 cut(s) 612
Bbv12I GWGCWC 3 cut(s) 108, 570, 721
BbvCI CCTCAGC 1 cut(s) 276
BccI CCATC 1 cut(s) 543
BclI TGATCA 1 cut(s) 895
BcnI CCSGG 4 cut(s) 140, 561, 838, 839
BcoDI GTCTC 1 cut(s) 737
BfaI CTAG 5 cut(s) 129, 266, 380, 851, 955
BfmI CTRYAG 3 cut(s) 459, 471, 514
Bme1390I CCNGG 4 cut(s) 140, 561, 838, 839
Bme18I GGWCC 3 cut(s) 169, 187, 552
BmeRI GACNNNNNGTC 1 cut(s) 142
BmeT110I CYCGRG 3 cut(s) 302, 720, 837
BmgT120I GGNCC 5 cut(s) 169, 187, 291, 552, 590
BmiI GGNNCC 2 cut(s) 188, 292
BmrFI CCNGG 4 cut(s) 140, 561, 838, 839
BmrI ACTGGG 1 cut(s) 761
BmsI GCATC 2 cut(s) 383, 837
BmtI GCTAGC 1 cut(s) 854
BmuI ACTGGG 1 cut(s) 761
Bpu10I CCTNAGC 3 cut(s) 276, 331, 402
BpuMI CCSGG 4 cut(s) 140, 561, 838, 839
BsaAI YACGTR 1 cut(s) 874
BsaHI GRCGYC 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 737
BsaJI CCNNGG 3 cut(s) 270, 641, 837
BsaWI WCCGGW 2 cut(s) 189, 904
BsaXI ACNNNNNCTCC 2 cut(s) 589, 619
Bsc4I CCNNNNNNNGG 6 cut(s) 332, 364, 587, 614, 696, 838
Bse1I ACTGG 3 cut(s) 49, 443, 756
Bse3DI GCAATG 2 cut(s) 618, 630
BseDI CCNNGG 3 cut(s) 270, 641, 837
BseGI GGATG 1 cut(s) 554
BseLI CCNNNNNNNGG 6 cut(s) 332, 364, 587, 614, 696, 838
BseMI GCAATG 2 cut(s) 618, 630
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 3 cut(s) 49, 443, 756
BseSI GKGCMC 1 cut(s) 637
Bsh1236I CGCG 1 cut(s) 91
BshFI GGCC 3 cut(s) 293, 520, 591
BsiHKAI GWGCWC 3 cut(s) 108, 570, 721
BsiHKCI CYCGRG 3 cut(s) 302, 720, 837
BsiSI CCGG 5 cut(s) 140, 190, 561, 838, 905
BslI CCNNNNNNNGG 6 cut(s) 332, 364, 587, 614, 696, 838
BsmAI GTCTC 1 cut(s) 737
BsmI GAATGC 1 cut(s) 310
BsnI GGCC 3 cut(s) 293, 520, 591
Bso31I GGTCTC 1 cut(s) 737
BsoBI CYCGRG 3 cut(s) 302, 720, 837
Bsp1286I GDGCHC 6 cut(s) 108, 322, 570, 637, 721, 807
Bsp1407I TGTACA 1 cut(s) 654
Bsp143I GATC 2 cut(s) 627, 895
Bsp19I CCATGG 2 cut(s) 270, 641
BspACI CCGC 2 cut(s) 126, 942
BspANI GGCC 3 cut(s) 293, 520, 591
BspCNI CTCAG 1 cut(s) 268
BspFNI CGCG 1 cut(s) 91
BspLI GGNNCC 2 cut(s) 188, 292
BspMAI CTGCAG 1 cut(s) 463
BspOI GCTAGC 1 cut(s) 854
BspQI GCTCTTC 1 cut(s) 80
BspTNI GGTCTC 1 cut(s) 737
BsrDI GCAATG 2 cut(s) 618, 630
BsrGI TGTACA 1 cut(s) 654
BsrI ACTGG 3 cut(s) 49, 443, 756
BssECI CCNNGG 3 cut(s) 270, 641, 837
BssMI GATC 2 cut(s) 627, 895
BssNAI GTATAC 1 cut(s) 195
BssNI GRCGYC 1 cut(s) 111
BssSI CACGAG 1 cut(s) 612
BssT1I CCWWGG 2 cut(s) 270, 641
Bst1107I GTATAC 1 cut(s) 195
Bst2BI CACGAG 1 cut(s) 612
Bst4CI ACNGT 3 cut(s) 262, 601, 742
Bst6I CTCTTC 1 cut(s) 80
BstACI GRCGYC 1 cut(s) 111
BstAUI TGTACA 1 cut(s) 654
BstBAI YACGTR 1 cut(s) 874
BstC8I GCNNGC 5 cut(s) 19, 71, 399, 637, 852
BstDEI CTNAG 4 cut(s) 276, 331, 402, 799
BstDSI CCRYGG 2 cut(s) 270, 641
BstENI CCTNNNNNAGG 1 cut(s) 330
BstF5I GGATG 1 cut(s) 554
BstFNI CGCG 1 cut(s) 91
BstKTI GATC 2 cut(s) 630, 898
BstMAI GTCTC 1 cut(s) 737
BstMBI GATC 2 cut(s) 627, 895
BstMWI GCNNNNNNNGC 5 cut(s) 281, 290, 398, 565, 802
BstSCI CCNGG 4 cut(s) 138, 559, 836, 837
BstSFI CTRYAG 3 cut(s) 459, 471, 514
BstSLI GKGCMC 1 cut(s) 637
BstSNI TACGTA 1 cut(s) 874
BstUI CGCG 1 cut(s) 91
BstZ17I GTATAC 1 cut(s) 195
BsuRI GGCC 3 cut(s) 293, 520, 591
BtgI CCRYGG 2 cut(s) 270, 641
BtsCI GGATG 1 cut(s) 554
BtsI GCAGTG 2 cut(s) 12, 420
BtsIMutI CAGTG 4 cut(s) 12, 420, 749, 891
Cac8I GCNNGC 5 cut(s) 19, 71, 399, 637, 852
Cfr13I GGNCC 5 cut(s) 169, 187, 291, 552, 590
Cfr9I CCCGGG 1 cut(s) 837
CseI GACGC 1 cut(s) 119
Csp6I GTAC 3 cut(s) 263, 655, 871
CspCI CAANNNNNGTGG 2 cut(s) 664, 699
CviAII CATG 7 cut(s) 55, 218, 271, 529, 556, 642, 764
CviQI GTAC 3 cut(s) 263, 655, 871
DdeI CTNAG 4 cut(s) 276, 331, 402, 799
DpnI GATC 2 cut(s) 629, 897
DpnII GATC 2 cut(s) 627, 895
DriI GACNNNNNGTC 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 80
Eam1105I GACNNNNNGTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 80
Eco105I TACGTA 1 cut(s) 874
Eco130I CCWWGG 2 cut(s) 270, 641
Eco24I GRGCYC 2 cut(s) 322, 807
Eco31I GGTCTC 1 cut(s) 737
Eco47I GGWCC 3 cut(s) 169, 187, 552
Eco88I CYCGRG 3 cut(s) 302, 720, 837
EcoNI CCTNNNNNAGG 1 cut(s) 330
EcoT14I CCWWGG 2 cut(s) 270, 641
EcoT38I GRGCYC 2 cut(s) 322, 807
ErhI CCWWGG 2 cut(s) 270, 641
FaeI CATG 7 cut(s) 58, 221, 274, 532, 559, 645, 767
FalI AAGNNNNNCTT 2 cut(s) 872, 904
FatI CATG 7 cut(s) 54, 217, 270, 528, 555, 641, 763
FauNDI CATATG 1 cut(s) 208
FbaI TGATCA 1 cut(s) 895
FblI GTMKAC 1 cut(s) 194
FokI GGATG 1 cut(s) 561
FriOI GRGCYC 2 cut(s) 322, 807
FspBI CTAG 5 cut(s) 129, 266, 380, 851, 955
HaeIII GGCC 3 cut(s) 293, 520, 591
HapII CCGG 5 cut(s) 140, 190, 561, 838, 905
HgaI GACGC 1 cut(s) 119
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 7 cut(s) 58, 221, 274, 532, 559, 645, 767
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 4 cut(s) 86, 143, 773, 828
HpaI GTTAAC 1 cut(s) 157
HpaII CCGG 5 cut(s) 140, 190, 561, 838, 905
HphI GGTGA 5 cut(s) 314, 724, 779, 894, 925
Hpy166II GTNNAC 4 cut(s) 157, 195, 418, 675
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 3 cut(s) 380, 485, 832
Hpy8I GTNNAC 4 cut(s) 157, 195, 418, 675
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 4 cut(s) 581, 690, 857, 874
HpyCH4III ACNGT 3 cut(s) 262, 601, 742
HpyCH4IV ACGT 2 cut(s) 121, 873
HpyCH4V TGCA 9 cut(s) 21, 69, 217, 253, 461, 623, 686, 704, 745
HpyF10VI GCNNNNNNNGC 5 cut(s) 281, 290, 398, 565, 802
HpyF3I CTNAG 4 cut(s) 276, 331, 402, 799
HpySE526I ACGT 2 cut(s) 121, 873
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 7 cut(s) 58, 221, 274, 532, 559, 645, 767
Ksp22I TGATCA 1 cut(s) 895
KspAI GTTAAC 1 cut(s) 157
Kzo9I GATC 2 cut(s) 627, 895
LguI GCTCTTC 1 cut(s) 80
LmnI GCTCC 2 cut(s) 573, 818
LweI GCATC 2 cut(s) 383, 837
MaeI CTAG 5 cut(s) 129, 266, 380, 851, 955
MaeII ACGT 2 cut(s) 121, 873
MaeIII GTNAC 2 cut(s) 92, 884
MalI GATC 2 cut(s) 629, 897
MboI GATC 2 cut(s) 627, 895
MboII GAAGA 4 cut(s) 43, 46, 67, 872
MhlI GDGCHC 6 cut(s) 108, 322, 570, 637, 721, 807
MluCI AATT 3 cut(s) 161, 431, 523
MlyI GAGTC 3 cut(s) 152, 767, 837
MnlI CCTC 8 cut(s) 107, 160, 271, 311, 336, 716, 722, 763
MseI TTAA 2 cut(s) 156, 297
MslI CAYNNNNRTG 2 cut(s) 623, 640
MspI CCGG 5 cut(s) 140, 190, 561, 838, 905
MspR9I CCNGG 4 cut(s) 140, 561, 838, 839
Mva1269I GAATGC 1 cut(s) 310
MvnI CGCG 1 cut(s) 91
MwoI GCNNNNNNNGC 5 cut(s) 281, 290, 398, 565, 802
NciI CCSGG 4 cut(s) 140, 561, 838, 839
NcoI CCATGG 2 cut(s) 270, 641
NdeI CATATG 1 cut(s) 208
NdeII GATC 2 cut(s) 627, 895
NheI GCTAGC 1 cut(s) 850
NlaIII CATG 7 cut(s) 58, 221, 274, 532, 559, 645, 767
NlaIV GGNNCC 2 cut(s) 188, 292
PaeR7I CTCGAG 2 cut(s) 302, 720
PciSI GCTCTTC 1 cut(s) 80
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PctI GAATGC 1 cut(s) 310
PfeI GAWTC 1 cut(s) 86
PflMI CCANNNNNTGG 1 cut(s) 364
PleI GAGTC 3 cut(s) 151, 767, 836
PpsI GAGTC 3 cut(s) 151, 767, 836
Ppu21I YACGTR 1 cut(s) 874
PspN4I GGNNCC 2 cut(s) 188, 292
PspPI GGNCC 5 cut(s) 169, 187, 291, 552, 590
PspXI VCTCGAGB 2 cut(s) 302, 720
PstI CTGCAG 1 cut(s) 463
RsaI GTAC 3 cut(s) 264, 656, 872
RsaNI GTAC 3 cut(s) 263, 655, 871
RseI CAYNNNNRTG 2 cut(s) 623, 640
SapI GCTCTTC 1 cut(s) 80
SaqAI TTAA 2 cut(s) 156, 297
Sau3AI GATC 2 cut(s) 627, 895
Sau96I GGNCC 5 cut(s) 169, 187, 291, 552, 590
SchI GAGTC 3 cut(s) 152, 767, 837
ScrFI CCNGG 4 cut(s) 140, 561, 838, 839
SduI GDGCHC 6 cut(s) 108, 322, 570, 637, 721, 807
SfaNI GCATC 2 cut(s) 383, 837
SfcI CTRYAG 3 cut(s) 459, 471, 514
Sfr274I CTCGAG 2 cut(s) 302, 720
SinI GGWCC 3 cut(s) 169, 187, 552
SlaI CTCGAG 2 cut(s) 302, 720
SmaI CCCGGG 1 cut(s) 839
SmiMI CAYNNNNRTG 2 cut(s) 623, 640
SmlI CTYRAG 2 cut(s) 302, 720
SmoI CTYRAG 2 cut(s) 302, 720
SnaBI TACGTA 1 cut(s) 874
Sse9I AATT 3 cut(s) 161, 431, 523
SsiI CCGC 2 cut(s) 126, 942
SspI AATATT 1 cut(s) 669
SspMI CTAG 5 cut(s) 129, 266, 380, 851, 955
StyD4I CCNGG 4 cut(s) 138, 559, 836, 837
StyI CCWWGG 2 cut(s) 270, 641
TaaI ACNGT 3 cut(s) 262, 601, 742
TaiI ACGT 2 cut(s) 124, 876
TaqI TCGA 5 cut(s) 108, 303, 342, 694, 721
TaqII GACCGA 1 cut(s) 186
TasI AATT 3 cut(s) 161, 431, 523
TatI WGTACW 2 cut(s) 262, 654
TauI GCSGC 1 cut(s) 128
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 2 cut(s) 156, 297
Tru9I TTAA 2 cut(s) 156, 297
TscAI CASTG 4 cut(s) 19, 420, 756, 898
TspDTI ATGAA 6 cut(s) 67, 399, 517, 600, 752, 944
TspMI CCCGGG 1 cut(s) 837
TspRI CASTG 4 cut(s) 19, 420, 756, 898
Van91I CCANNNNNTGG 1 cut(s) 364
VpaK11BI GGWCC 3 cut(s) 169, 187, 552
XagI CCTNNNNNAGG 1 cut(s) 330
XapI RAATTY 3 cut(s) 161, 431, 523
XbaI TCTAGA 1 cut(s) 379
XhoI CTCGAG 2 cut(s) 302, 720
XmaI CCCGGG 1 cut(s) 837
XmiI GTMKAC 1 cut(s) 194
XspI CTAG 5 cut(s) 129, 266, 380, 851, 955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.