FvH4_6g44870

Formiminotransferase domain

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
34512965 .. 34515323
2359 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44870.t3

Sequence Viewer

Length: 957 bp
ATGGAGTACAACACTGCTTGCAAGGACAAGAAGAAGAAAACTATAGATCAGTCCATGCTGCTGTGCTGCAAGCTTTTCATATCTGAATCGCGTAACCTCACTGTGCTTGACGCCATTGAACGTGCCGCTAGGCTTGACCTGGAGTCTGTCATTGTTAACAAATTTGAGGACCGAGCTTACAATAGGGTCCGGTATACTATTGTGTCATATGTTCTGCATGATAGCACAGGAAGTGCCATATACAGCCCCTTGCAGCAAACTGTACTAGCCATGGCCGAGGCAGCATTCGGCGCCATTAACCTCGAGCAGCACTCAGGGGCTCACCCTCGCTTAGGGGTTGTCGACGACATTGTGTTCCACCCTTTGGCAAGAGCATCTCTAGATGAAGCAGCTTGGCTTGCTAAGGCTGTGGGAGCAGACATTGGCAATAAATTCCAAGTTCCAGTATATCTATATGCTGCAGCACACCCTACAGGCAAGGCTCTTGATACCATTAGGCGTGAGCTTGGCTACTTCAGACCAAACTTCATGGGCAACCAATGGGCAGGATGGACCATGCCGGGAGTGCTTCAAGAGAAACCCGATGAAGGCCCGACTAGTGTATCTCCAACCAGAGGCATTGCAATGATCGGAGCACGTCCATGGGTTGCCTTGTACAACATACCTATACTGTCCACCGATGTTGCAGCTACTCGAAGGATTGCACGAATGGTGAGTGCTCGAGGGGGAGGTCTCCCAACTGTGCAAACATTGGGACTTGTTCATGGTGAGGACTCCACAGAGATAGCTTGCATGCTCTTAGAGCCAAACCAGATTGGAGCAGACAGAGTCCAGAACCGAGTTGAGATGCTAGCAGCAGAAGAAGGGTTGTATGTGGAGAAGGGTTACTTCACTGATCACTCACCAGATATGATAATTGAAAAGTATATGAAACTAATATCTACAGATAGAAACTAG

Protein Analysis

319

Amino Acids

35.13

Weight (kDa)

6.19

Isoelectric Point (pI)

35.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FTCD_N PF07837 2 - 195 1.2e-51 Formiminotransferase domain, N-terminal subdomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 290
AccB7I CCANNNNNTGG 1 cut(s) 364
AccI GTMKAC 2 cut(s) 194, 342
AccII CGCG 1 cut(s) 91
AciI CCGC 1 cut(s) 126
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 2 cut(s) 161, 431
AcuI CTGAAG 1 cut(s) 499
AcyI GRCGYC 2 cut(s) 111, 291
AfaI GTAC 3 cut(s) 8, 264, 656
AfiI CCNNNNNNNGG 4 cut(s) 332, 364, 587, 614
AgsI TTSAA 3 cut(s) 119, 572, 920
AhdI GACNNNNNGTC 1 cut(s) 142
AhlI ACTAGT 1 cut(s) 596
AjiI CACGTC 1 cut(s) 638
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 6 cut(s) 73, 176, 392, 505, 689, 788
AluI AGCT 6 cut(s) 73, 176, 392, 505, 689, 788
Alw21I GWGCWC 2 cut(s) 637, 721
Alw26I GTCTC 1 cut(s) 737
Ama87I CYCGRG 2 cut(s) 302, 720
AoxI GGCC 2 cut(s) 273, 589
ApoI RAATTY 2 cut(s) 161, 431
AspLEI GCGC 1 cut(s) 293
AspS9I GGNCC 4 cut(s) 169, 187, 552, 590
AsuC2I CCSGG 1 cut(s) 561
AsuHPI GGTGA 4 cut(s) 314, 724, 779, 894
AsuNHI GCTAGC 1 cut(s) 850
AvaI CYCGRG 2 cut(s) 302, 720
AvaII GGWCC 3 cut(s) 169, 187, 552
BaeI ACNNNNGTAYC 2 cut(s) 585, 618
BanI GGYRCC 1 cut(s) 290
BanII GRGCYC 1 cut(s) 322
Bbv12I GWGCWC 2 cut(s) 637, 721
BccI CCATC 1 cut(s) 543
BciT130I CCWGG 1 cut(s) 140
BclI TGATCA 1 cut(s) 895
BcnI CCSGG 1 cut(s) 561
BcoDI GTCTC 1 cut(s) 737
BcuI ACTAGT 1 cut(s) 596
BfaI CTAG 6 cut(s) 129, 266, 380, 597, 851, 955
BfmI CTRYAG 4 cut(s) 42, 459, 471, 942
BfoI RGCGCY 1 cut(s) 294
Bme1390I CCNGG 2 cut(s) 140, 561
Bme18I GGWCC 3 cut(s) 169, 187, 552
BmeRI GACNNNNNGTC 1 cut(s) 142
BmeT110I CYCGRG 2 cut(s) 302, 720
BmgBI CACGTC 1 cut(s) 638
BmgT120I GGNCC 4 cut(s) 169, 187, 552, 590
BmiI GGNNCC 2 cut(s) 188, 292
BmrFI CCNGG 2 cut(s) 140, 561
BmsI GCATC 2 cut(s) 383, 837
BmtI GCTAGC 1 cut(s) 854
BplI GAGNNNNNCTC 2 cut(s) 296, 328
BpmI CTGGAG 1 cut(s) 161
Bpu10I CCTNAGC 2 cut(s) 331, 402
BpuMI CCSGG 1 cut(s) 561
BsaHI GRCGYC 2 cut(s) 111, 291
BsaI GGTCTC 1 cut(s) 737
BsaJI CCNNGG 3 cut(s) 270, 276, 641
BsaWI WCCGGW 1 cut(s) 189
Bsc4I CCNNNNNNNGG 4 cut(s) 332, 364, 587, 614
Bse1I ACTGG 1 cut(s) 443
Bse3DI GCAATG 2 cut(s) 618, 630
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 3 cut(s) 270, 276, 641
BseGI GGATG 1 cut(s) 554
BseLI CCNNNNNNNGG 4 cut(s) 332, 364, 587, 614
BseMI GCAATG 2 cut(s) 618, 630
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 1 cut(s) 443
Bsh1236I CGCG 1 cut(s) 91
BshFI GGCC 2 cut(s) 275, 591
BshNI GGYRCC 1 cut(s) 290
BsiHKAI GWGCWC 2 cut(s) 637, 721
BsiHKCI CYCGRG 2 cut(s) 302, 720
BsiSI CCGG 2 cut(s) 190, 560
BslFI GGGAC 1 cut(s) 768
BslI CCNNNNNNNGG 4 cut(s) 332, 364, 587, 614
BsmAI GTCTC 1 cut(s) 737
BsmFI GGGAC 1 cut(s) 768
BsmI GAATGC 1 cut(s) 284
BsnI GGCC 2 cut(s) 275, 591
Bso31I GGTCTC 1 cut(s) 737
BsoBI CYCGRG 2 cut(s) 302, 720
Bsp1286I GDGCHC 3 cut(s) 322, 637, 721
Bsp1407I TGTACA 1 cut(s) 654
Bsp143I GATC 3 cut(s) 46, 627, 895
Bsp19I CCATGG 2 cut(s) 270, 641
BspACI CCGC 1 cut(s) 126
BspANI GGCC 2 cut(s) 275, 591
BspCNI CTCAG 1 cut(s) 326
BspFNI CGCG 1 cut(s) 91
BspLI GGNNCC 2 cut(s) 188, 292
BspMAI CTGCAG 1 cut(s) 463
BspOI GCTAGC 1 cut(s) 854
BspT107I GGYRCC 1 cut(s) 290
BspTNI GGTCTC 1 cut(s) 737
BsrDI GCAATG 2 cut(s) 618, 630
BsrGI TGTACA 1 cut(s) 654
BsrI ACTGG 1 cut(s) 443
BssECI CCNNGG 3 cut(s) 270, 276, 641
BssMI GATC 3 cut(s) 46, 627, 895
BssNAI GTATAC 1 cut(s) 195
BssNI GRCGYC 2 cut(s) 111, 291
BssT1I CCWWGG 2 cut(s) 270, 641
Bst1107I GTATAC 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 4 cut(s) 103, 262, 672, 742
BstACI GRCGYC 2 cut(s) 111, 291
BstAUI TGTACA 1 cut(s) 654
BstC8I GCNNGC 6 cut(s) 19, 71, 399, 790, 794, 852
BstDEI CTNAG 4 cut(s) 313, 331, 402, 799
BstDSI CCRYGG 2 cut(s) 270, 641
BstENI CCTNNNNNAGG 1 cut(s) 330
BstF5I GGATG 1 cut(s) 554
BstFNI CGCG 1 cut(s) 91
BstH2I RGCGCY 1 cut(s) 294
BstHHI GCGC 1 cut(s) 293
BstKTI GATC 3 cut(s) 49, 630, 898
BstMAI GTCTC 1 cut(s) 737
BstMBI GATC 3 cut(s) 46, 627, 895
BstMWI GCNNNNNNNGC 6 cut(s) 281, 290, 398, 413, 565, 802
BstNI CCWGG 1 cut(s) 140
BstNSI RCATGY 1 cut(s) 796
BstSCI CCNGG 2 cut(s) 138, 559
BstSFI CTRYAG 4 cut(s) 42, 459, 471, 942
BstUI CGCG 1 cut(s) 91
BstZ17I GTATAC 1 cut(s) 195
BsuRI GGCC 2 cut(s) 275, 591
BtgI CCRYGG 2 cut(s) 270, 641
BtrI CACGTC 1 cut(s) 638
BtsCI GGATG 1 cut(s) 554
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 3 cut(s) 12, 99, 891
Cac8I GCNNGC 6 cut(s) 19, 71, 399, 790, 794, 852
CfoI GCGC 1 cut(s) 293
Cfr13I GGNCC 4 cut(s) 169, 187, 552, 590
CseI GACGC 1 cut(s) 119
Csp6I GTAC 3 cut(s) 7, 263, 655
CspCI CAANNNNNGTGG 2 cut(s) 664, 699
CviAII CATG 8 cut(s) 55, 218, 271, 529, 556, 642, 764, 793
CviQI GTAC 3 cut(s) 7, 263, 655
DdeI CTNAG 4 cut(s) 313, 331, 402, 799
DinI GGCGCC 1 cut(s) 292
DpnI GATC 3 cut(s) 48, 629, 897
DpnII GATC 3 cut(s) 46, 627, 895
DriI GACNNNNNGTC 1 cut(s) 142
EaeI YGGCCR 1 cut(s) 273
Eam1105I GACNNNNNGTC 1 cut(s) 142
Eco130I CCWWGG 2 cut(s) 270, 641
Eco24I GRGCYC 1 cut(s) 322
Eco31I GGTCTC 1 cut(s) 737
Eco47I GGWCC 3 cut(s) 169, 187, 552
Eco57I CTGAAG 1 cut(s) 499
Eco88I CYCGRG 2 cut(s) 302, 720
EcoNI CCTNNNNNAGG 1 cut(s) 330
EcoRII CCWGG 1 cut(s) 138
EcoT14I CCWWGG 2 cut(s) 270, 641
EcoT38I GRGCYC 1 cut(s) 322
EgeI GGCGCC 1 cut(s) 292
EheI GGCGCC 1 cut(s) 292
ErhI CCWWGG 2 cut(s) 270, 641
FaeI CATG 8 cut(s) 58, 221, 274, 532, 559, 645, 767, 796
FalI AAGNNNNNCTT 2 cut(s) 872, 904
FaqI GGGAC 1 cut(s) 768
FatI CATG 8 cut(s) 54, 217, 270, 528, 555, 641, 763, 792
FauNDI CATATG 1 cut(s) 208
FbaI TGATCA 1 cut(s) 895
FblI GTMKAC 2 cut(s) 194, 342
FokI GGATG 1 cut(s) 561
FriOI GRGCYC 1 cut(s) 322
FspBI CTAG 6 cut(s) 129, 266, 380, 597, 851, 955
GlaI GCGC 1 cut(s) 292
GsuI CTGGAG 1 cut(s) 161
HaeII RGCGCY 1 cut(s) 294
HaeIII GGCC 2 cut(s) 275, 591
HapII CCGG 2 cut(s) 190, 560
HgaI GACGC 1 cut(s) 119
HhaI GCGC 1 cut(s) 293
Hin1I GRCGYC 2 cut(s) 111, 291
Hin1II CATG 8 cut(s) 58, 221, 274, 532, 559, 645, 767, 796
Hin6I GCGC 1 cut(s) 291
HinP1I GCGC 1 cut(s) 291
HincII GTYRAC 2 cut(s) 157, 343
HindII GTYRAC 2 cut(s) 157, 343
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 4 cut(s) 86, 143, 773, 828
HpaI GTTAAC 1 cut(s) 157
HpaII CCGG 2 cut(s) 190, 560
HphI GGTGA 4 cut(s) 314, 724, 779, 894
Hpy166II GTNNAC 4 cut(s) 157, 195, 343, 675
Hpy188I TCNGA 3 cut(s) 85, 518, 632
Hpy188III TCNNGA 4 cut(s) 380, 485, 572, 832
Hpy8I GTNNAC 4 cut(s) 157, 195, 343, 675
Hpy99I CGWCG 1 cut(s) 347
HpyAV CCTTC 4 cut(s) 581, 690, 857, 874
HpyCH4III ACNGT 4 cut(s) 103, 262, 672, 742
HpyCH4IV ACGT 2 cut(s) 121, 637
HpyF10VI GCNNNNNNNGC 6 cut(s) 281, 290, 398, 413, 565, 802
HpyF3I CTNAG 4 cut(s) 313, 331, 402, 799
HpySE526I ACGT 2 cut(s) 121, 637
Hsp92I GRCGYC 2 cut(s) 111, 291
Hsp92II CATG 8 cut(s) 58, 221, 274, 532, 559, 645, 767, 796
HspAI GCGC 1 cut(s) 291
KasI GGCGCC 1 cut(s) 290
Ksp22I TGATCA 1 cut(s) 895
KspAI GTTAAC 1 cut(s) 157
Kzo9I GATC 3 cut(s) 46, 627, 895
LmnI GCTCC 3 cut(s) 413, 632, 818
LweI GCATC 2 cut(s) 383, 837
MaeI CTAG 6 cut(s) 129, 266, 380, 597, 851, 955
MaeII ACGT 2 cut(s) 121, 637
MaeIII GTNAC 2 cut(s) 92, 884
MalI GATC 3 cut(s) 48, 629, 897
MboI GATC 3 cut(s) 46, 627, 895
MboII GAAGA 3 cut(s) 43, 46, 872
MhlI GDGCHC 3 cut(s) 322, 637, 721
MluCI AATT 3 cut(s) 161, 431, 915
Mly113I GGCGCC 1 cut(s) 291
MlyI GAGTC 3 cut(s) 152, 767, 837
MmeI TCCRAC 1 cut(s) 632
MnlI CCTC 9 cut(s) 107, 160, 271, 311, 336, 608, 716, 722, 763
MseI TTAA 2 cut(s) 156, 297
MslI CAYNNNNRTG 2 cut(s) 623, 640
MspI CCGG 2 cut(s) 190, 560
MspR9I CCNGG 2 cut(s) 140, 561
Mva1269I GAATGC 1 cut(s) 284
MvaI CCWGG 1 cut(s) 140
MvnI CGCG 1 cut(s) 91
MwoI GCNNNNNNNGC 6 cut(s) 281, 290, 398, 413, 565, 802
NarI GGCGCC 1 cut(s) 291
NciI CCSGG 1 cut(s) 561
NcoI CCATGG 2 cut(s) 270, 641
NdeI CATATG 1 cut(s) 208
NdeII GATC 3 cut(s) 46, 627, 895
NheI GCTAGC 1 cut(s) 850
NlaIII CATG 8 cut(s) 58, 221, 274, 532, 559, 645, 767, 796
NlaIV GGNNCC 2 cut(s) 188, 292
NmeAIII GCCGAG 1 cut(s) 301
NspI RCATGY 1 cut(s) 796
PaeI GCATGC 1 cut(s) 796
PaeR7I CTCGAG 2 cut(s) 302, 720
PctI GAATGC 1 cut(s) 284
PfeI GAWTC 1 cut(s) 86
PflFI GACNNNGTC 1 cut(s) 827
PflMI CCANNNNNTGG 1 cut(s) 364
PleI GAGTC 3 cut(s) 151, 767, 836
PluTI GGCGCC 1 cut(s) 294
PpsI GAGTC 3 cut(s) 151, 767, 836
Psp6I CCWGG 1 cut(s) 138
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 2 cut(s) 188, 292
PspPI GGNCC 4 cut(s) 169, 187, 552, 590
PspXI VCTCGAGB 2 cut(s) 302, 720
PstI CTGCAG 1 cut(s) 463
PsyI GACNNNGTC 1 cut(s) 827
RsaI GTAC 3 cut(s) 8, 264, 656
RsaNI GTAC 3 cut(s) 7, 263, 655
RseI CAYNNNNRTG 2 cut(s) 623, 640
SalI GTCGAC 1 cut(s) 341
SaqAI TTAA 2 cut(s) 156, 297
Sau3AI GATC 3 cut(s) 46, 627, 895
Sau96I GGNCC 4 cut(s) 169, 187, 552, 590
SchI GAGTC 3 cut(s) 152, 767, 837
ScrFI CCNGG 2 cut(s) 140, 561
SduI GDGCHC 3 cut(s) 322, 637, 721
SfaNI GCATC 2 cut(s) 383, 837
SfcI CTRYAG 4 cut(s) 42, 459, 471, 942
SfoI GGCGCC 1 cut(s) 292
Sfr274I CTCGAG 2 cut(s) 302, 720
SinI GGWCC 3 cut(s) 169, 187, 552
SlaI CTCGAG 2 cut(s) 302, 720
SmiMI CAYNNNNRTG 2 cut(s) 623, 640
SmlI CTYRAG 2 cut(s) 302, 720
SmoI CTYRAG 2 cut(s) 302, 720
SpeI ACTAGT 1 cut(s) 596
SphI GCATGC 1 cut(s) 796
Sse9I AATT 3 cut(s) 161, 431, 915
SsiI CCGC 1 cut(s) 126
SspDI GGCGCC 1 cut(s) 290
SspMI CTAG 6 cut(s) 129, 266, 380, 597, 851, 955
StyD4I CCNGG 2 cut(s) 138, 559
StyI CCWWGG 2 cut(s) 270, 641
TaaI ACNGT 4 cut(s) 103, 262, 672, 742
TaiI ACGT 2 cut(s) 124, 640
TaqI TCGA 4 cut(s) 303, 342, 694, 721
TaqII GACCGA 1 cut(s) 186
TasI AATT 3 cut(s) 161, 431, 915
TatI WGTACW 3 cut(s) 6, 262, 654
TauI GCSGC 1 cut(s) 128
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 2 cut(s) 156, 297
Tru9I TTAA 2 cut(s) 156, 297
TscAI CASTG 3 cut(s) 19, 106, 898
TspDTI ATGAA 6 cut(s) 67, 399, 517, 600, 752, 944
TspRI CASTG 3 cut(s) 19, 106, 898
Tth111I GACNNNGTC 1 cut(s) 827
Van91I CCANNNNNTGG 1 cut(s) 364
VpaK11BI GGWCC 3 cut(s) 169, 187, 552
XagI CCTNNNNNAGG 1 cut(s) 330
XapI RAATTY 2 cut(s) 161, 431
XbaI TCTAGA 1 cut(s) 379
XceI RCATGY 1 cut(s) 796
XhoI CTCGAG 2 cut(s) 302, 720
XmiI GTMKAC 2 cut(s) 194, 342
XspI CTAG 6 cut(s) 129, 266, 380, 597, 851, 955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.