pycom09g01790

Formiminotransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0001831
Physical Location & Seq
Reverse (-)
1376159 .. 1377856
1698 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g01790.1

Sequence Viewer

Length: 1110 bp
ATGGAGGAGCTGGTTGAGAAGTACCCGATCATGGAACCGGAGGACGAGAGCGTCGGGGATGTGATGGAGGCTCTGAGGTTGAAGTTCAGGGCGGTTTGTGCTTCGTTGGGTGTGAAATTGGAGTATAAGGGGTACCCAAAAGGTGCTTCTGAGGGTTTTTCTGCAGTTGGTGATGAGCAGGAGGGAGAGAAAATGTTGAAGTCGATGCTTGGTTGCTGCAAGGTTTACATATCCGAAAGCAGAAACAGGGCAGCGCTGGAATCAATCGAACGGGCTGCTAAGCTTTTCTTGGAAGCACCGATTGTGAATAAGTTCGAGGATGAAACGTACAACAGAGTTGGTTACACACTTGTCTCTAAGTTGGCTCCAAAGCCGTCTGTCGATCCTTGTCCTTTGAAGATGGCAGTGCTTGCCATGGTCAAGGCTGCTTTCGAAACAATTGATCTCGAGTCACATTGTGGAAGTCATCCGCGGCTAGGAGTTGTGGATCATATATGCTTTCATCCCCTTCTCGGTGCTTCTTTGGAGCAAGTGGCTGGTGTTGCAAACTCTTTGGCTGCAGAAGTTGGCTCTAGTCTTCAAGTCCCTACTTTTCTCTATGGAGCTGCCCATGAAGAGGGAAGAACGCTTGATTCAGTCAGAAGAGAGTTAGGTTACTTCAAGCCGAATTCTAGTGGAGAGCAATGGGTTGGGGGACCGAAATCAGATTACTTGGCGCTGAAGCCGGACAAGGGTCCCCCTCAAGTGACTCAAGGAAGGGGTGTCATTGTGATTGGAGCAACCCGGTGGGTTGATAACTATAATGTCCCGGTCATCTCTACTGATATTGCTGCTGTTCGTAGAATTGCAAAACAAGTGAGTGGCAGGGGAGGCGGACTTGCTTCGGTCCAAGCCATGGCACTTGCGCACGGTGAATCCATCATCGAAGTCGCTTGCAATTTGTTGGAACCAGAGAAGGTGGGAGGAGATAAGGTTCAACTTGAAGTTGAGAGGCTTGCAAGGGAAGAGGGTATGAGAGTTGGGAAAGGCTACTTCACTGATTTTTCTCAGGAAAGATTAATTGAAAGTTACTTGAAGTCGGATTTCAGTACAAACAAAATGTGTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FTCD_N Yae1_N

Protein Analysis

370

Amino Acids

40.18

Weight (kDa)

5.49

Isoelectric Point (pI)

33.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FTCD_N PF07837 72 - 261 2.4e-52 Formiminotransferase domain, N-terminal subdomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 50
Acc16I TGCGCA 1 cut(s) 906
Acc65I GGTACC 1 cut(s) 132
AccB1I GGYRCC 1 cut(s) 132
AccB7I CCANNNNNTGG 1 cut(s) 895
AccII CGCG 1 cut(s) 472
AciI CCGC 4 cut(s) 92, 470, 472, 873
AclWI GGATC 2 cut(s) 377, 495
AcsI RAATTY 1 cut(s) 667
AcuI CTGAAG 1 cut(s) 740
AdeI CACNNNGTG 1 cut(s) 458
AfaI GTAC 4 cut(s) 23, 134, 329, 1090
AfeI AGCGCT 1 cut(s) 255
AfiI CCNNNNNNNGG 6 cut(s) 31, 476, 512, 616, 731, 895
AgsI TTSAA 9 cut(s) 82, 199, 397, 581, 661, 977, 983, 1064, 1075
AjuI GAANNNNNNNTTGG 2 cut(s) 130, 162
AloI GAACNNNNNNTCC 2 cut(s) 957, 989
AluBI AGCT 3 cut(s) 10, 283, 605
AluI AGCT 3 cut(s) 10, 283, 605
Alw26I GTCTC 1 cut(s) 358
AlwI GGATC 2 cut(s) 377, 495
Ama87I CYCGRG 1 cut(s) 446
Aor51HI AGCGCT 1 cut(s) 255
ApeKI GCWGC 7 cut(s) 216, 251, 275, 425, 557, 605, 830
ApoI RAATTY 1 cut(s) 667
AseI ATTAAT 1 cut(s) 1058
Asp700I GAANNNNTTC 1 cut(s) 311
Asp718I GGTACC 1 cut(s) 132
AspLEI GCGC 3 cut(s) 256, 718, 907
AspS9I GGNCC 3 cut(s) 695, 734, 886
AsuC2I CCSGG 2 cut(s) 784, 809
AsuHPI GGTGA 2 cut(s) 182, 923
AsuII TTCGAA 1 cut(s) 432
AvaI CYCGRG 1 cut(s) 446
AvaII GGWCC 3 cut(s) 695, 734, 886
BanI GGYRCC 1 cut(s) 132
BbsI GAAGAC 1 cut(s) 569
BbvI GCAGC 7 cut(s) 203, 262, 263, 412, 544, 592, 817
BccI CCATC 3 cut(s) 58, 394, 926
BceAI ACGGC 1 cut(s) 358
BcgI CGANNNNNNTGC 2 cut(s) 257, 291
BcnI CCSGG 2 cut(s) 784, 809
BcoDI GTCTC 1 cut(s) 358
BfaI CTAG 4 cut(s) 476, 573, 672, 1108
BfmI CTRYAG 2 cut(s) 162, 558
BfoI RGCGCY 2 cut(s) 257, 719
BisI GCNGC 8 cut(s) 217, 252, 276, 426, 473, 558, 606, 831
BlpI GCTNAGC 1 cut(s) 279
BlsI GCNGC 8 cut(s) 218, 253, 277, 427, 474, 559, 607, 832
Bme1390I CCNGG 2 cut(s) 784, 809
Bme18I GGWCC 3 cut(s) 695, 734, 886
BmeT110I CYCGRG 1 cut(s) 446
BmgT120I GGNCC 3 cut(s) 695, 734, 886
BmiI GGNNCC 7 cut(s) 36, 134, 366, 696, 735, 736, 948
BmrFI CCNGG 2 cut(s) 784, 809
BmsI GCATC 1 cut(s) 195
BoxI GACNNNNGTC 1 cut(s) 732
BpiI GAAGAC 1 cut(s) 569
Bpu1102I GCTNAGC 1 cut(s) 279
Bpu14I TTCGAA 1 cut(s) 432
BpuEI CTTGAG 2 cut(s) 726, 735
BpuMI CCSGG 2 cut(s) 784, 809
BsaJI CCNNGG 3 cut(s) 414, 470, 894
BsaWI WCCGGW 1 cut(s) 37
BsaXI ACNNNNNCTCC 2 cut(s) 957, 987
Bsc4I CCNNNNNNNGG 6 cut(s) 31, 476, 512, 616, 731, 895
Bse3DI GCAATG 1 cut(s) 689
BseDI CCNNGG 3 cut(s) 414, 470, 894
BseGI GGATG 4 cut(s) 64, 325, 466, 502
BseLI CCNNNNNNNGG 6 cut(s) 31, 476, 512, 616, 731, 895
BseMI GCAATG 1 cut(s) 689
BseMII CTCAG 3 cut(s) 65, 141, 1061
BseRI GAGGAG 2 cut(s) 20, 978
BseXI GCAGC 7 cut(s) 203, 262, 263, 412, 544, 592, 817
Bsh1236I CGCG 1 cut(s) 472
BshNI GGYRCC 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 446
BsiSI CCGG 4 cut(s) 38, 725, 784, 809
BslFI GGGAC 4 cut(s) 569, 708, 720, 791
BslI CCNNNNNNNGG 6 cut(s) 31, 476, 512, 616, 731, 895
BsmAI GTCTC 1 cut(s) 358
BsmFI GGGAC 4 cut(s) 569, 708, 720, 791
BsoBI CYCGRG 1 cut(s) 446
Bsp119I TTCGAA 1 cut(s) 432
Bsp143I GATC 4 cut(s) 27, 382, 442, 487
Bsp1720I GCTNAGC 1 cut(s) 279
Bsp19I CCATGG 2 cut(s) 414, 894
BspACI CCGC 4 cut(s) 92, 470, 472, 873
BspCNI CTCAG 3 cut(s) 66, 142, 1060
BspFNI CGCG 1 cut(s) 472
BspLI GGNNCC 7 cut(s) 36, 134, 366, 696, 735, 736, 948
BspMAI CTGCAG 2 cut(s) 166, 562
BspPI GGATC 2 cut(s) 377, 495
BspT104I TTCGAA 1 cut(s) 432
BspT107I GGYRCC 1 cut(s) 132
BsrDI GCAATG 1 cut(s) 689
BssECI CCNNGG 3 cut(s) 414, 470, 894
BssMI GATC 4 cut(s) 27, 382, 442, 487
BssT1I CCWWGG 2 cut(s) 414, 894
Bst4CI ACNGT 1 cut(s) 911
Bst6I CTCTTC 3 cut(s) 609, 637, 999
BstAPI GCANNNNNTGC 1 cut(s) 410
BstBI TTCGAA 1 cut(s) 432
BstC8I GCNNGC 3 cut(s) 411, 934, 996
BstDEI CTNAG 5 cut(s) 74, 150, 279, 357, 1047
BstDSI CCRYGG 3 cut(s) 414, 470, 894
BstF5I GGATG 4 cut(s) 64, 325, 466, 502
BstFNI CGCG 1 cut(s) 472
BstH2I RGCGCY 2 cut(s) 257, 719
BstHHI GCGC 3 cut(s) 256, 718, 907
BstKTI GATC 4 cut(s) 30, 385, 445, 490
BstMAI GTCTC 1 cut(s) 358
BstMBI GATC 4 cut(s) 27, 382, 442, 487
BstMWI GCNNNNNNNGC 4 cut(s) 98, 410, 542, 870
BstPAI GACNNNNGTC 1 cut(s) 732
BstSCI CCNGG 2 cut(s) 782, 807
BstSFI CTRYAG 2 cut(s) 162, 558
BstUI CGCG 1 cut(s) 472
BstV1I GCAGC 7 cut(s) 203, 262, 263, 412, 544, 592, 817
BstV2I GAAGAC 1 cut(s) 569
BtgI CCRYGG 3 cut(s) 414, 470, 894
BtsCI GGATG 4 cut(s) 64, 325, 466, 502
BtsI GCAGTG 1 cut(s) 411
BtsIMutI CAGTG 2 cut(s) 411, 1035
Cac8I GCNNGC 3 cut(s) 411, 934, 996
CfoI GCGC 3 cut(s) 256, 718, 907
Cfr13I GGNCC 3 cut(s) 695, 734, 886
Cfr42I CCGCGG 1 cut(s) 473
CseI GACGC 1 cut(s) 40
Csp6I GTAC 4 cut(s) 22, 133, 328, 1089
CviAII CATG 4 cut(s) 31, 415, 611, 895
CviQI GTAC 4 cut(s) 22, 133, 328, 1089
DdeI CTNAG 5 cut(s) 74, 150, 279, 357, 1047
DpnI GATC 4 cut(s) 29, 384, 444, 489
DpnII GATC 4 cut(s) 27, 382, 442, 487
DraIII CACNNNGTG 1 cut(s) 458
DrdI GACNNNNNNGTC 1 cut(s) 50
DseDI GACNNNNNNGTC 1 cut(s) 50
Eam1104I CTCTTC 3 cut(s) 609, 637, 999
EarI CTCTTC 3 cut(s) 609, 637, 999
EciI GGCGGA 1 cut(s) 888
Eco130I CCWWGG 2 cut(s) 414, 894
Eco47I GGWCC 3 cut(s) 695, 734, 886
Eco47III AGCGCT 1 cut(s) 255
Eco57I CTGAAG 1 cut(s) 740
Eco88I CYCGRG 1 cut(s) 446
EcoO109I RGGNCCY 1 cut(s) 734
EcoRI GAATTC 1 cut(s) 667
EcoT14I CCWWGG 2 cut(s) 414, 894
ErhI CCWWGG 2 cut(s) 414, 894
FaeI CATG 4 cut(s) 34, 418, 614, 898
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FaqI GGGAC 4 cut(s) 569, 708, 720, 791
FatI CATG 4 cut(s) 30, 414, 610, 894
Fnu4HI GCNGC 8 cut(s) 217, 252, 276, 426, 473, 558, 606, 831
FokI GGATG 4 cut(s) 71, 332, 453, 489
Fsp4HI GCNGC 8 cut(s) 217, 252, 276, 426, 473, 558, 606, 831
FspBI CTAG 4 cut(s) 476, 573, 672, 1108
FspI TGCGCA 1 cut(s) 906
GlaI GCGC 3 cut(s) 255, 717, 906
GluI GCNGC 8 cut(s) 217, 252, 276, 426, 473, 558, 606, 831
HaeII RGCGCY 2 cut(s) 257, 719
HapII CCGG 4 cut(s) 38, 725, 784, 809
HgaI GACGC 1 cut(s) 40
HhaI GCGC 3 cut(s) 256, 718, 907
Hin1II CATG 4 cut(s) 34, 418, 614, 898
Hin6I GCGC 3 cut(s) 254, 716, 905
HinP1I GCGC 3 cut(s) 254, 716, 905
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 5 cut(s) 260, 449, 632, 748, 914
HpaII CCGG 4 cut(s) 38, 725, 784, 809
HphI GGTGA 2 cut(s) 182, 923
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 6 cut(s) 75, 151, 235, 641, 706, 1081
Hpy188III TCNNGA 2 cut(s) 446, 1049
Hpy8I GTNNAC 1 cut(s) 226
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 3 cut(s) 518, 750, 949
HpyCH4III ACNGT 1 cut(s) 911
HpyCH4IV ACGT 1 cut(s) 326
HpyCH4V TGCA 7 cut(s) 164, 219, 545, 560, 848, 936, 998
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 410, 542, 870
HpyF3I CTNAG 5 cut(s) 74, 150, 279, 357, 1047
HpySE526I ACGT 1 cut(s) 326
Hsp92II CATG 4 cut(s) 34, 418, 614, 898
HspAI GCGC 3 cut(s) 254, 716, 905
KflI GGGWCCC 1 cut(s) 734
KpnI GGTACC 1 cut(s) 136
KspI CCGCGG 1 cut(s) 473
Kzo9I GATC 4 cut(s) 27, 382, 442, 487
LmnI GCTCC 5 cut(s) 7, 370, 526, 602, 776
Lsp1109I GCAGC 7 cut(s) 203, 262, 263, 412, 544, 592, 817
LweI GCATC 1 cut(s) 195
MaeI CTAG 4 cut(s) 476, 573, 672, 1108
MaeII ACGT 1 cut(s) 326
MaeIII GTNAC 5 cut(s) 341, 450, 653, 745, 1067
MalI GATC 4 cut(s) 29, 384, 444, 489
MboI GATC 4 cut(s) 27, 382, 442, 487
MboII GAAGA 6 cut(s) 409, 569, 626, 633, 654, 1016
MfeI CAATTG 1 cut(s) 438
MluCI AATT 6 cut(s) 116, 438, 667, 843, 937, 1059
MlyI GAGTC 2 cut(s) 458, 742
MmeI TCCRAC 2 cut(s) 924, 1059
MroXI GAANNNNTTC 1 cut(s) 311
MseI TTAA 1 cut(s) 1058
MspA1I CMGCKG 1 cut(s) 472
MspI CCGG 4 cut(s) 38, 725, 784, 809
MspR9I CCNGG 2 cut(s) 784, 809
MunI CAATTG 1 cut(s) 438
MvnI CGCG 1 cut(s) 472
MwoI GCNNNNNNNGC 4 cut(s) 98, 410, 542, 870
NciI CCSGG 2 cut(s) 784, 809
NcoI CCATGG 2 cut(s) 414, 894
NdeII GATC 4 cut(s) 27, 382, 442, 487
NlaIII CATG 4 cut(s) 34, 418, 614, 898
NlaIV GGNNCC 7 cut(s) 36, 134, 366, 696, 735, 736, 948
NmuCI GTSAC 2 cut(s) 450, 745
NsbI TGCGCA 1 cut(s) 906
NspV TTCGAA 1 cut(s) 432
PaeR7I CTCGAG 1 cut(s) 446
PdmI GAANNNNTTC 1 cut(s) 311
PfeI GAWTC 3 cut(s) 260, 632, 914
PflMI CCANNNNNTGG 1 cut(s) 895
PkrI GCNGC 8 cut(s) 218, 253, 277, 427, 474, 559, 607, 832
PleI GAGTC 2 cut(s) 457, 742
PpsI GAGTC 2 cut(s) 457, 742
PpuMI RGGWCCY 1 cut(s) 734
PshAI GACNNNNGTC 1 cut(s) 732
PshBI ATTAAT 1 cut(s) 1058
Psp5II RGGWCCY 1 cut(s) 734
PspN4I GGNNCC 7 cut(s) 36, 134, 366, 696, 735, 736, 948
PspPI GGNCC 3 cut(s) 695, 734, 886
PspPPI RGGWCCY 1 cut(s) 734
PstI CTGCAG 2 cut(s) 166, 562
RsaI GTAC 4 cut(s) 23, 134, 329, 1090
RsaNI GTAC 4 cut(s) 22, 133, 328, 1089
SacII CCGCGG 1 cut(s) 473
SaqAI TTAA 1 cut(s) 1058
SatI GCNGC 8 cut(s) 217, 252, 276, 426, 473, 558, 606, 831
Sau3AI GATC 4 cut(s) 27, 382, 442, 487
Sau96I GGNCC 3 cut(s) 695, 734, 886
SchI GAGTC 2 cut(s) 458, 742
ScrFI CCNGG 2 cut(s) 784, 809
SfaNI GCATC 1 cut(s) 195
SfcI CTRYAG 2 cut(s) 162, 558
Sfr274I CTCGAG 1 cut(s) 446
Sfr303I CCGCGG 1 cut(s) 473
SfuI TTCGAA 1 cut(s) 432
SgrBI CCGCGG 1 cut(s) 473
SinI GGWCC 3 cut(s) 695, 734, 886
SlaI CTCGAG 1 cut(s) 446
SmlI CTYRAG 3 cut(s) 446, 741, 750
SmoI CTYRAG 3 cut(s) 446, 741, 750
Sse9I AATT 6 cut(s) 116, 438, 667, 843, 937, 1059
SsiI CCGC 4 cut(s) 92, 470, 472, 873
SspMI CTAG 4 cut(s) 476, 573, 672, 1108
StyD4I CCNGG 2 cut(s) 782, 807
StyI CCWWGG 2 cut(s) 414, 894
TaaI ACNGT 1 cut(s) 911
TaiI ACGT 1 cut(s) 329
TaqI TCGA 7 cut(s) 203, 267, 315, 381, 432, 447, 924
TaqII GACCGA 2 cut(s) 712, 874
TasI AATT 6 cut(s) 116, 438, 667, 843, 937, 1059
TatI WGTACW 1 cut(s) 1088
TauI GCSGC 1 cut(s) 475
TfiI GAWTC 3 cut(s) 260, 632, 914
Tru1I TTAA 1 cut(s) 1058
Tru9I TTAA 1 cut(s) 1058
TscAI CASTG 2 cut(s) 411, 1042
TseFI GTSAC 2 cut(s) 450, 745
TseI GCWGC 7 cut(s) 216, 251, 275, 425, 557, 605, 830
Tsp45I GTSAC 2 cut(s) 450, 745
TspDTI ATGAA 3 cut(s) 336, 491, 627
TspRI CASTG 2 cut(s) 411, 1042
Van91I CCANNNNNTGG 1 cut(s) 895
VpaK11BI GGWCC 3 cut(s) 695, 734, 886
VspI ATTAAT 1 cut(s) 1058
XapI RAATTY 1 cut(s) 667
XhoI CTCGAG 1 cut(s) 446
XmnI GAANNNNTTC 1 cut(s) 311
XspI CTAG 4 cut(s) 476, 573, 672, 1108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.