Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026966.1

Orthogroup ID

OG0001831

Physical Location & Seq

Genomic Coordinates Reverse (-)

1264 .. 2534

Gene Structure 1271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026966.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atgttaaaatcaatgcttggttgctgcaaggtgtacatatctgaaagcagaaataggcttgcactggagtcaattgagcgagctgctaagcgattctcggaagcacccgttgtcaataagtttgaagatgaaacttacaacagagttggctacactcttgtctctaagctggctccaaagccatctggggacccttgtcccttgaggatggctgtccttgccatggttaaggctgcttttgaaaccattgactttgagtcgcactgtggaagtcatccccggattggagttgtggatcatatatgctttcacccccttcttggtgcttcgttggaacagatggctggtgttgcaaactccttagcggcagatgttggctctagtcttcaagttcctacatttctatatggagctgcccatgaagagaggagggcacttgattcaattagaagagagctcggttacttcaagccaaactctagtggagaacagtgggttgggggtccaaaatcggaatacttggcactgaagccagacaaaggtccccctaaagtgactcaagagaaaggtgtcattgtgattggagcaacccagtgggtggataattataacgtccctgtccactctactgatattgctgccgttcgtagaatttcgaaacgtgtgagtggcagaggaggtggacttccttcagtccaagcaatggcccttgcgcatggtgaatctgtcacggaggtagcttgcaatttgttggaaccacaggaagtgggaggagatagggttcagcttgaagttgagaggcttgcaaaagaagaaggtttgacagtggggaagggctacttcactgatctttctcaagaaaaattaatcgaaaggtatttgcaatcagtttctgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FTCD_N Yae1_N

Protein Analysis

299

Amino Acids

32.51

Weight (kDa)

6.67

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20830 AT2G20830 AT2G20830 AT2G20830 AT2G20830 AT2G20830
fragaria_vesca	FvH4_6g44860 FvH4_6g44860 FvH4_6g44870 FvH4_6g44870 FvH4_6g44870
malus_domestica	MD09G1092400.v1.1 MD09G1092500.v1.1 MD17G1082500.v1.1
prunus_persica	Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232700_v2.0.a1 Prupe.3G232700_v2.0.a1
pyrus_communis	pycom09g01780 pycom09g01790 pycom17g08050 pycom17g08060
rosa_chinensis	RchiOBHm_Chr2g0162051 RchiOBHm_Chr2g0162061
rosa_laevigata	RLG00000021319
rosa_multiflora	Rmu_co8364399.1_g000001 Rmu_sc0005601.1_g000004 Rmu_sc0005601.1_g000005 Rmu_sc0026966.1_g000002
rosa_roxburghii	Rroxscaffold_2G00088340 Rroxscaffold_2G00088350
rosa_rugosa	Rorug02G0494300
rosa_samantha	Rh2AG560400 Rh2AG560500 Rh2BG573700 Rh2BG573800 Rh2CG544000 Rh2CG544100 Rh2DG583700 Rh2DG583800
rosa_wichuraiana	Rw2G046410 Rw2G046420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	609
Acc16I	TGCGCA	1 cut(s)	714
AccB7I	CCANNNNNTGG	2 cut(s)	598, 703
AciI	CCGC	1 cut(s)	365
AclWI	GGATC	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	651
AcuI	CTGAAG	2 cut(s)	548, 675
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	6 cut(s)	223, 284, 320, 539, 598, 703
AflIII	ACRYGT	1 cut(s)	661
AgsI	TTSAA	6 cut(s)	125, 242, 389, 444, 469, 791
AhdI	GACNNNNNGTC	1 cut(s)	256
AjuI	GAANNNNNNNTTGG	2 cut(s)	480, 512
AloI	GAACNNNNNNTCC	2 cut(s)	765, 797
AluBI	AGCT	6 cut(s)	83, 169, 413, 457, 740, 787
AluI	AGCT	6 cut(s)	83, 169, 413, 457, 740, 787
Alw21I	GWGCWC	1 cut(s)	459
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	1 cut(s)	303
AlwNI	CAGNNNCTG	1 cut(s)	893
AoxI	GGCC	1 cut(s)	705
ApeKI	GCWGC	5 cut(s)	24, 83, 233, 413, 638
ApoI	RAATTY	1 cut(s)	651
AseI	ATTAAT	1 cut(s)	866
AspLEI	GCGC	1 cut(s)	715
AspS9I	GGNCC	4 cut(s)	190, 503, 542, 706
AsuC2I	CCSGG	1 cut(s)	280
AsuHPI	GGTGA	2 cut(s)	302, 731
AsuII	TTCGAA	1 cut(s)	656
AvaII	GGWCC	3 cut(s)	190, 503, 542
BaeGI	GKGCMC	1 cut(s)	436
BanII	GRGCYC	1 cut(s)	459
BbsI	GAAGAC	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	5 cut(s)	11, 70, 220, 400, 625
BccI	CCATC	3 cut(s)	190, 202, 334
BceAI	ACGGC	1 cut(s)	626
BcnI	CCSGG	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	2 cut(s)	381, 480
BisI	GCNGC	6 cut(s)	25, 84, 234, 366, 414, 639
BlpI	GCTNAGC	1 cut(s)	87
BlsI	GCNGC	6 cut(s)	26, 85, 235, 367, 415, 640
Bme1390I	CCNGG	1 cut(s)	280
Bme18I	GGWCC	3 cut(s)	190, 503, 542
BmeRI	GACNNNNNGTC	1 cut(s)	256
BmgT120I	GGNCC	4 cut(s)	190, 503, 542, 706
BmiI	GGNNCC	6 cut(s)	174, 191, 192, 504, 544, 756
BmrFI	CCNGG	1 cut(s)	280
BmrI	ACTGGG	1 cut(s)	586
BmuI	ACTGGG	1 cut(s)	586
BoxI	GACNNNNGTC	2 cut(s)	195, 540
BpiI	GAAGAC	1 cut(s)	377
BpmI	CTGGAG	1 cut(s)	86
Bpu10I	CCTNAGC	1 cut(s)	361
Bpu1102I	GCTNAGC	1 cut(s)	87
Bpu14I	TTCGAA	1 cut(s)	656
BpuEI	CTTGAG	3 cut(s)	223, 543, 840
BpuMI	CCSGG	1 cut(s)	280
BsaJI	CCNNGG	2 cut(s)	222, 278
BsaXI	ACNNNNNCTCC	2 cut(s)	765, 795
Bsc4I	CCNNNNNNNGG	6 cut(s)	223, 284, 320, 539, 598, 703
Bse1I	ACTGG	2 cut(s)	69, 592
Bse3DI	GCAATG	1 cut(s)	708
BseDI	CCNNGG	2 cut(s)	222, 278
BseGI	GGATG	2 cut(s)	213, 274
BseLI	CCNNNNNNNGG	6 cut(s)	223, 284, 320, 539, 598, 703
BseMI	GCAATG	1 cut(s)	708
BseNI	ACTGG	2 cut(s)	69, 592
BseRI	GAGGAG	3 cut(s)	442, 690, 786
BseSI	GKGCMC	1 cut(s)	436
BseXI	GCAGC	5 cut(s)	11, 70, 220, 400, 625
BshFI	GGCC	1 cut(s)	707
BsiHKAI	GWGCWC	1 cut(s)	459
BsiSI	CCGG	1 cut(s)	280
BslFI	GGGAC	4 cut(s)	183, 203, 528, 599
BslI	CCNNNNNNNGG	6 cut(s)	223, 284, 320, 539, 598, 703
BsmAI	GTCTC	1 cut(s)	166
BsmFI	GGGAC	4 cut(s)	183, 203, 528, 599
BsnI	GGCC	1 cut(s)	707
Bsp119I	TTCGAA	1 cut(s)	656
Bsp1286I	GDGCHC	2 cut(s)	436, 459
Bsp1407I	TGTACA	1 cut(s)	33
Bsp143I	GATC	2 cut(s)	295, 847
Bsp1720I	GCTNAGC	1 cut(s)	87
Bsp19I	CCATGG	1 cut(s)	222
BspACI	CCGC	1 cut(s)	365
BspANI	GGCC	1 cut(s)	707
BspLI	GGNNCC	6 cut(s)	174, 191, 192, 504, 544, 756
BspPI	GGATC	1 cut(s)	303
BspT104I	TTCGAA	1 cut(s)	656
BsrDI	GCAATG	1 cut(s)	708
BsrGI	TGTACA	1 cut(s)	33
BsrI	ACTGG	2 cut(s)	69, 592
BssECI	CCNNGG	2 cut(s)	222, 278
BssMI	GATC	2 cut(s)	295, 847
BssT1I	CCWWGG	1 cut(s)	222
Bst4CI	ACNGT	3 cut(s)	266, 492, 826
Bst6I	CTCTTC	2 cut(s)	417, 445
BstAUI	TGTACA	1 cut(s)	33
BstBI	TTCGAA	1 cut(s)	656
BstC8I	GCNNGC	5 cut(s)	60, 81, 171, 742, 804
BstDEI	CTNAG	3 cut(s)	87, 165, 361
BstDSI	CCRYGG	1 cut(s)	222
BstF5I	GGATG	2 cut(s)	213, 274
BstHHI	GCGC	1 cut(s)	715
BstKTI	GATC	2 cut(s)	298, 850
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	2 cut(s)	295, 847
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 350
BstPAI	GACNNNNGTC	2 cut(s)	195, 540
BstSCI	CCNGG	1 cut(s)	278
BstSLI	GKGCMC	1 cut(s)	436
BstV1I	GCAGC	5 cut(s)	11, 70, 220, 400, 625
BstV2I	GAAGAC	1 cut(s)	377
BsuRI	GGCC	1 cut(s)	707
BtgI	CCRYGG	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	213, 274
BtsIMutI	CAGTG	7 cut(s)	62, 262, 497, 524, 599, 831, 843
Cac8I	GCNNGC	5 cut(s)	60, 81, 171, 742, 804
CaiI	CAGNNNCTG	1 cut(s)	893
CfoI	GCGC	1 cut(s)	715
Cfr13I	GGNCC	4 cut(s)	190, 503, 542, 706
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	3 cut(s)	223, 419, 716
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	3 cut(s)	87, 165, 361
DpnI	GATC	2 cut(s)	297, 849
DpnII	GATC	2 cut(s)	295, 847
DriI	GACNNNNNGTC	1 cut(s)	256
Eam1104I	CTCTTC	2 cut(s)	417, 445
Eam1105I	GACNNNNNGTC	1 cut(s)	256
EarI	CTCTTC	2 cut(s)	417, 445
Ecl136II	GAGCTC	1 cut(s)	457
Eco130I	CCWWGG	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	459
Eco47I	GGWCC	3 cut(s)	190, 503, 542
Eco53kI	GAGCTC	1 cut(s)	457
Eco57I	CTGAAG	2 cut(s)	548, 675
EcoICRI	GAGCTC	1 cut(s)	457
EcoO109I	RGGNCCY	2 cut(s)	190, 542
EcoT14I	CCWWGG	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	3 cut(s)	226, 422, 719
FalI	AAGNNNNNCTT	2 cut(s)	824, 856
FaqI	GGGAC	4 cut(s)	183, 203, 528, 599
FatI	CATG	3 cut(s)	222, 418, 715
Fnu4HI	GCNGC	6 cut(s)	25, 84, 234, 366, 414, 639
FokI	GGATG	2 cut(s)	220, 261
FriOI	GRGCYC	1 cut(s)	459
Fsp4HI	GCNGC	6 cut(s)	25, 84, 234, 366, 414, 639
FspBI	CTAG	2 cut(s)	381, 480
FspI	TGCGCA	1 cut(s)	714
GlaI	GCGC	1 cut(s)	714
GluI	GCNGC	6 cut(s)	25, 84, 234, 366, 414, 639
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	1 cut(s)	707
HapII	CCGG	1 cut(s)	280
HhaI	GCGC	1 cut(s)	715
Hin1II	CATG	3 cut(s)	226, 422, 719
Hin6I	GCGC	1 cut(s)	713
HinP1I	GCGC	1 cut(s)	713
HinfI	GANTC	6 cut(s)	68, 93, 257, 440, 556, 722
HpaII	CCGG	1 cut(s)	280
HphI	GGTGA	2 cut(s)	302, 731
Hpy166II	GTNNAC	3 cut(s)	34, 622, 683
Hpy188I	TCNGA	3 cut(s)	43, 100, 514
Hpy188III	TCNNGA	2 cut(s)	560, 857
Hpy8I	GTNNAC	3 cut(s)	34, 622, 683
HpyAV	CCTTC	4 cut(s)	326, 699, 809, 826
HpyCH4III	ACNGT	3 cut(s)	266, 492, 826
HpyCH4IV	ACGT	2 cut(s)	612, 661
HpyCH4V	TGCA	6 cut(s)	27, 62, 353, 744, 806, 883
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 350
HpyF3I	CTNAG	3 cut(s)	87, 165, 361
HpySE526I	ACGT	2 cut(s)	612, 661
Hsp92II	CATG	3 cut(s)	226, 422, 719
HspAI	GCGC	1 cut(s)	713
KflI	GGGWCCC	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	295, 847
LmnI	GCTCC	3 cut(s)	178, 410, 584
LpnPI	CCDG	9 cut(s)	50, 155, 171, 293, 330, 546, 605, 630, 746
Lsp1109I	GCAGC	5 cut(s)	11, 70, 220, 400, 625
MaeI	CTAG	2 cut(s)	381, 480
MaeII	ACGT	2 cut(s)	612, 661
MaeIII	GTNAC	3 cut(s)	461, 553, 727
MalI	GATC	2 cut(s)	297, 849
MboI	GATC	2 cut(s)	295, 847
MboII	GAAGA	5 cut(s)	137, 377, 434, 462, 824
MfeI	CAATTG	1 cut(s)	72
MhlI	GDGCHC	2 cut(s)	436, 459
MluCI	AATT	6 cut(s)	72, 444, 604, 651, 745, 863
MlyI	GAGTC	3 cut(s)	77, 266, 550
MmeI	TCCRAC	2 cut(s)	312, 732
MnlI	CCTC	8 cut(s)	198, 420, 423, 668, 671, 727, 764, 792
MseI	TTAA	3 cut(s)	5, 228, 866
MspI	CCGG	1 cut(s)	280
MspR9I	CCNGG	1 cut(s)	280
MunI	CAATTG	1 cut(s)	72
MwoI	GCNNNNNNNGC	2 cut(s)	218, 350
NciI	CCSGG	1 cut(s)	280
NcoI	CCATGG	1 cut(s)	222
NdeII	GATC	2 cut(s)	295, 847
NlaIII	CATG	3 cut(s)	226, 422, 719
NlaIV	GGNNCC	6 cut(s)	174, 191, 192, 504, 544, 756
NmuCI	GTSAC	2 cut(s)	553, 727
NsbI	TGCGCA	1 cut(s)	714
NspV	TTCGAA	1 cut(s)	656
PfeI	GAWTC	3 cut(s)	93, 440, 722
PflMI	CCANNNNNTGG	2 cut(s)	598, 703
PkrI	GCNGC	6 cut(s)	26, 85, 235, 367, 415, 640
PleI	GAGTC	3 cut(s)	76, 265, 550
PpsI	GAGTC	3 cut(s)	76, 265, 550
PpuMI	RGGWCCY	2 cut(s)	190, 542
PshAI	GACNNNNGTC	2 cut(s)	195, 540
PshBI	ATTAAT	1 cut(s)	866
PsiI	TTATAA	1 cut(s)	609
Psp124BI	GAGCTC	1 cut(s)	459
Psp5II	RGGWCCY	2 cut(s)	190, 542
PspN4I	GGNNCC	6 cut(s)	174, 191, 192, 504, 544, 756
PspPI	GGNCC	4 cut(s)	190, 503, 542, 706
PspPPI	RGGWCCY	2 cut(s)	190, 542
PstNI	CAGNNNCTG	1 cut(s)	893
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SacI	GAGCTC	1 cut(s)	459
SaqAI	TTAA	3 cut(s)	5, 228, 866
SatI	GCNGC	6 cut(s)	25, 84, 234, 366, 414, 639
Sau3AI	GATC	2 cut(s)	295, 847
Sau96I	GGNCC	4 cut(s)	190, 503, 542, 706
SchI	GAGTC	3 cut(s)	77, 266, 550
ScrFI	CCNGG	1 cut(s)	280
SduI	GDGCHC	2 cut(s)	436, 459
SfuI	TTCGAA	1 cut(s)	656
SinI	GGWCC	3 cut(s)	190, 503, 542
SmlI	CTYRAG	3 cut(s)	202, 558, 855
SmoI	CTYRAG	3 cut(s)	202, 558, 855
Sse9I	AATT	6 cut(s)	72, 444, 604, 651, 745, 863
SsiI	CCGC	1 cut(s)	365
SspMI	CTAG	2 cut(s)	381, 480
SstI	GAGCTC	1 cut(s)	459
StyD4I	CCNGG	1 cut(s)	278
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	3 cut(s)	266, 492, 826
TaiI	ACGT	2 cut(s)	615, 664
TaqI	TCGA	2 cut(s)	656, 870
TasI	AATT	6 cut(s)	72, 444, 604, 651, 745, 863
TatI	WGTACW	1 cut(s)	33
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	3 cut(s)	93, 440, 722
Tru1I	TTAA	3 cut(s)	5, 228, 866
Tru9I	TTAA	3 cut(s)	5, 228, 866
TscAI	CASTG	7 cut(s)	69, 269, 497, 531, 599, 831, 850
TseFI	GTSAC	2 cut(s)	553, 727
TseI	GCWGC	5 cut(s)	24, 83, 233, 413, 638
Tsp45I	GTSAC	2 cut(s)	553, 727
TspDTI	ATGAA	2 cut(s)	144, 435
TspGWI	ACGGA	1 cut(s)	746
TspRI	CASTG	7 cut(s)	69, 269, 497, 531, 599, 831, 850
Van91I	CCANNNNNTGG	2 cut(s)	598, 703
VpaK11BI	GGWCC	3 cut(s)	190, 503, 542
VspI	ATTAAT	1 cut(s)	866
XapI	RAATTY	1 cut(s)	651
XspI	CTAG	2 cut(s)	381, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.