RchiOBHm_Chr2g0162051

Formiminotransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001831
Physical Location & Seq
Forward (+)
77845223 .. 77848268
3046 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53036

Sequence Viewer

Length: 951 bp
ATGGAGGATTTGAGCTTTGGATCTTGTAATGAGCAGCAAGGAGGAGAGAAAATGTTAAAATCAATGCTTGGTTGCTGCAAGGTGTACATATCTGAAAGCAGAAATAGGCTTGCACTGGAGTCAATTGAGCGAGCTGCTAAGCGATTCTCGGAAGCACCCATTGTCAATAAGTTTGAAGATGAAACTTACAACAGAGTTGGCTACACTCTTGTCTCTAAGCTGGCTCAAAAGCCATCTGGGAACCCTTGTCCCTTGAGGATGGCTGTCCTTGCCATGGTTAAGGCTGCTTTTGAAACCATTGACCTTGAGTCGCACTGTGGAAGTCATCCCCGGCTTGGAGTTGTGGATCATATATGCTTTCACCCCCTTCTTGGTGCTTCGTTGGAACAGATGGCTGGTGTTGCAAACTCCTTAGCGGCAGATGTTGGCTCTAGTCTTCAAGTTCCTACATTTCTATATGGAGCTGCCCATGAAGAGAGGAGGGCACTTGATTCAATTAGAAGAGAGCTCGGTTACTTCAAGCCAAACTCTAGTGGAGAACAGTGGGTTGGGGGTCCAAAATCGGAATACTTGGCACTGAAGCCAGACAAAGGTCCCCCTAAAGTGACTCAAGAGAAAGGTGTCATTGTGATTGGAGCAACCCGGTGGGTGGATAATTATAATGTCCCTGTCCACTCTACTGATATTGCTGCCGTTCGTAGAATTTCGAAACGTGTGAGTGGCAGAGGAGGTGGACTTCCTTCAGTCCAAGCAATGGCCCTTGCGCATGGTGAATCTGTCACGGAGGTAGCTTGCAATTTGTTGGAACCACAGGAAGTGGGAGGAGATAGGGTTCAGCTTGAAGTTGAGAGGCTTGCAAAAGAAGAAGGTTTGACAGTGGGGAAGGGCTACTTCACTGATCTTTCTCAAGAAAAATTAATCGAAAGGTATTTGCAATCAGTTTCTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FTCD_N Yae1_N

Protein Analysis

316

Amino Acids

34.39

Weight (kDa)

6.41

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FTCD_N PF07837 25 - 214 4.1e-54 Formiminotransferase domain, N-terminal subdomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 660
Acc16I TGCGCA 1 cut(s) 765
AccB7I CCANNNNNTGG 1 cut(s) 754
AciI CCGC 1 cut(s) 416
AclWI GGATC 2 cut(s) 28, 354
AcsI RAATTY 1 cut(s) 702
AcuI CTGAAG 2 cut(s) 599, 726
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 6 cut(s) 274, 335, 371, 590, 649, 754
AflIII ACRYGT 1 cut(s) 712
AgsI TTSAA 6 cut(s) 176, 293, 440, 495, 520, 842
AhdI GACNNNNNGTC 1 cut(s) 307
AjuI GAANNNNNNNTTGG 2 cut(s) 531, 563
AloI GAACNNNNNNTCC 2 cut(s) 816, 848
AluBI AGCT 7 cut(s) 15, 134, 220, 464, 508, 791, 838
AluI AGCT 7 cut(s) 15, 134, 220, 464, 508, 791, 838
Alw21I GWGCWC 1 cut(s) 510
Alw26I GTCTC 1 cut(s) 217
AlwI GGATC 2 cut(s) 28, 354
AlwNI CAGNNNCTG 1 cut(s) 944
AoxI GGCC 1 cut(s) 756
ApeKI GCWGC 6 cut(s) 34, 75, 134, 284, 464, 689
ApoI RAATTY 1 cut(s) 702
AseI ATTAAT 1 cut(s) 917
AspLEI GCGC 1 cut(s) 766
AspS9I GGNCC 3 cut(s) 554, 593, 757
AsuC2I CCSGG 2 cut(s) 331, 643
AsuHPI GGTGA 2 cut(s) 353, 782
AsuII TTCGAA 1 cut(s) 707
AvaII GGWCC 2 cut(s) 554, 593
BaeGI GKGCMC 1 cut(s) 487
BanII GRGCYC 1 cut(s) 510
BbsI GAAGAC 1 cut(s) 428
Bbv12I GWGCWC 1 cut(s) 510
BbvI GCAGC 6 cut(s) 46, 62, 121, 271, 451, 676
BccI CCATC 3 cut(s) 241, 253, 385
BceAI ACGGC 1 cut(s) 677
BcnI CCSGG 2 cut(s) 331, 643
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 2 cut(s) 432, 531
BisI GCNGC 7 cut(s) 35, 76, 135, 285, 417, 465, 690
BlpI GCTNAGC 1 cut(s) 138
BlsI GCNGC 7 cut(s) 36, 77, 136, 286, 418, 466, 691
Bme1390I CCNGG 2 cut(s) 331, 643
Bme18I GGWCC 2 cut(s) 554, 593
BmeRI GACNNNNNGTC 1 cut(s) 307
BmgT120I GGNCC 3 cut(s) 554, 593, 757
BmiI GGNNCC 4 cut(s) 242, 555, 595, 807
BmrFI CCNGG 2 cut(s) 331, 643
BoxI GACNNNNGTC 1 cut(s) 591
BpiI GAAGAC 1 cut(s) 428
BpmI CTGGAG 1 cut(s) 137
Bpu10I CCTNAGC 1 cut(s) 412
Bpu1102I GCTNAGC 1 cut(s) 138
Bpu14I TTCGAA 1 cut(s) 707
BpuEI CTTGAG 4 cut(s) 274, 326, 594, 891
BpuMI CCSGG 2 cut(s) 331, 643
BsaJI CCNNGG 2 cut(s) 273, 329
BsaXI ACNNNNNCTCC 2 cut(s) 816, 846
Bsc4I CCNNNNNNNGG 6 cut(s) 274, 335, 371, 590, 649, 754
Bse1I ACTGG 1 cut(s) 120
Bse3DI GCAATG 1 cut(s) 759
BseDI CCNNGG 2 cut(s) 273, 329
BseGI GGATG 2 cut(s) 264, 325
BseLI CCNNNNNNNGG 6 cut(s) 274, 335, 371, 590, 649, 754
BseMI GCAATG 1 cut(s) 759
BseNI ACTGG 1 cut(s) 120
BseRI GAGGAG 4 cut(s) 57, 493, 741, 837
BseSI GKGCMC 1 cut(s) 487
BseXI GCAGC 6 cut(s) 46, 62, 121, 271, 451, 676
BshFI GGCC 1 cut(s) 758
BsiHKAI GWGCWC 1 cut(s) 510
BsiSI CCGG 2 cut(s) 331, 643
BslFI GGGAC 3 cut(s) 234, 579, 650
BslI CCNNNNNNNGG 6 cut(s) 274, 335, 371, 590, 649, 754
BsmAI GTCTC 1 cut(s) 217
BsmFI GGGAC 3 cut(s) 234, 579, 650
BsnI GGCC 1 cut(s) 758
Bsp119I TTCGAA 1 cut(s) 707
Bsp1286I GDGCHC 2 cut(s) 487, 510
Bsp1407I TGTACA 1 cut(s) 84
Bsp143I GATC 3 cut(s) 20, 346, 898
Bsp1720I GCTNAGC 1 cut(s) 138
Bsp19I CCATGG 1 cut(s) 273
BspACI CCGC 1 cut(s) 416
BspANI GGCC 1 cut(s) 758
BspLI GGNNCC 4 cut(s) 242, 555, 595, 807
BspPI GGATC 2 cut(s) 28, 354
BspT104I TTCGAA 1 cut(s) 707
BsrDI GCAATG 1 cut(s) 759
BsrGI TGTACA 1 cut(s) 84
BsrI ACTGG 1 cut(s) 120
BssECI CCNNGG 2 cut(s) 273, 329
BssMI GATC 3 cut(s) 20, 346, 898
BssT1I CCWWGG 1 cut(s) 273
Bst4CI ACNGT 3 cut(s) 317, 543, 877
Bst6I CTCTTC 2 cut(s) 468, 496
BstAUI TGTACA 1 cut(s) 84
BstBI TTCGAA 1 cut(s) 707
BstC8I GCNNGC 5 cut(s) 111, 132, 222, 793, 855
BstDEI CTNAG 3 cut(s) 138, 216, 412
BstDSI CCRYGG 1 cut(s) 273
BstF5I GGATG 2 cut(s) 264, 325
BstHHI GCGC 1 cut(s) 766
BstKTI GATC 3 cut(s) 23, 349, 901
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 3 cut(s) 20, 346, 898
BstMWI GCNNNNNNNGC 2 cut(s) 269, 401
BstPAI GACNNNNGTC 1 cut(s) 591
BstSCI CCNGG 2 cut(s) 329, 641
BstSLI GKGCMC 1 cut(s) 487
BstV1I GCAGC 6 cut(s) 46, 62, 121, 271, 451, 676
BstV2I GAAGAC 1 cut(s) 428
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BsuRI GGCC 1 cut(s) 758
BtgI CCRYGG 1 cut(s) 273
BtsCI GGATG 2 cut(s) 264, 325
BtsIMutI CAGTG 6 cut(s) 113, 313, 548, 575, 882, 894
Cac8I GCNNGC 5 cut(s) 111, 132, 222, 793, 855
CaiI CAGNNNCTG 1 cut(s) 944
CfoI GCGC 1 cut(s) 766
Cfr13I GGNCC 3 cut(s) 554, 593, 757
Csp6I GTAC 1 cut(s) 85
CviAII CATG 3 cut(s) 274, 470, 767
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 3 cut(s) 138, 216, 412
DpnI GATC 3 cut(s) 22, 348, 900
DpnII GATC 3 cut(s) 20, 346, 898
DriI GACNNNNNGTC 1 cut(s) 307
Eam1104I CTCTTC 2 cut(s) 468, 496
Eam1105I GACNNNNNGTC 1 cut(s) 307
EarI CTCTTC 2 cut(s) 468, 496
Ecl136II GAGCTC 1 cut(s) 508
Eco130I CCWWGG 1 cut(s) 273
Eco24I GRGCYC 1 cut(s) 510
Eco47I GGWCC 2 cut(s) 554, 593
Eco53kI GAGCTC 1 cut(s) 508
Eco57I CTGAAG 2 cut(s) 599, 726
EcoICRI GAGCTC 1 cut(s) 508
EcoO109I RGGNCCY 1 cut(s) 593
EcoT14I CCWWGG 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 510
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 3 cut(s) 277, 473, 770
FalI AAGNNNNNCTT 2 cut(s) 875, 907
FaqI GGGAC 3 cut(s) 234, 579, 650
FatI CATG 3 cut(s) 273, 469, 766
Fnu4HI GCNGC 7 cut(s) 35, 76, 135, 285, 417, 465, 690
FokI GGATG 2 cut(s) 271, 312
FriOI GRGCYC 1 cut(s) 510
Fsp4HI GCNGC 7 cut(s) 35, 76, 135, 285, 417, 465, 690
FspBI CTAG 2 cut(s) 432, 531
FspI TGCGCA 1 cut(s) 765
GlaI GCGC 1 cut(s) 765
GluI GCNGC 7 cut(s) 35, 76, 135, 285, 417, 465, 690
GsuI CTGGAG 1 cut(s) 137
HaeIII GGCC 1 cut(s) 758
HapII CCGG 2 cut(s) 331, 643
HhaI GCGC 1 cut(s) 766
Hin1II CATG 3 cut(s) 277, 473, 770
Hin6I GCGC 1 cut(s) 764
HinP1I GCGC 1 cut(s) 764
HinfI GANTC 6 cut(s) 119, 144, 308, 491, 607, 773
HpaII CCGG 2 cut(s) 331, 643
HphI GGTGA 2 cut(s) 353, 782
Hpy166II GTNNAC 3 cut(s) 85, 673, 734
Hpy188I TCNGA 3 cut(s) 94, 151, 565
Hpy188III TCNNGA 2 cut(s) 611, 908
Hpy8I GTNNAC 3 cut(s) 85, 673, 734
HpyAV CCTTC 4 cut(s) 377, 750, 860, 877
HpyCH4III ACNGT 3 cut(s) 317, 543, 877
HpyCH4IV ACGT 1 cut(s) 712
HpyCH4V TGCA 6 cut(s) 78, 113, 404, 795, 857, 934
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 401
HpyF3I CTNAG 3 cut(s) 138, 216, 412
HpySE526I ACGT 1 cut(s) 712
Hsp92II CATG 3 cut(s) 277, 473, 770
HspAI GCGC 1 cut(s) 764
Kzo9I GATC 3 cut(s) 20, 346, 898
LmnI GCTCC 2 cut(s) 461, 635
LpnPI CCDG 9 cut(s) 101, 206, 222, 344, 381, 597, 656, 681, 797
Lsp1109I GCAGC 6 cut(s) 46, 62, 121, 271, 451, 676
MaeI CTAG 2 cut(s) 432, 531
MaeII ACGT 1 cut(s) 712
MaeIII GTNAC 3 cut(s) 512, 604, 778
MalI GATC 3 cut(s) 22, 348, 900
MboI GATC 3 cut(s) 20, 346, 898
MboII GAAGA 5 cut(s) 188, 428, 485, 513, 875
MfeI CAATTG 1 cut(s) 123
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 2 cut(s) 487, 510
MluCI AATT 6 cut(s) 123, 495, 655, 702, 796, 914
MlyI GAGTC 3 cut(s) 128, 317, 601
MmeI TCCRAC 2 cut(s) 363, 783
MnlI CCTC 9 cut(s) 35, 249, 471, 474, 719, 722, 778, 815, 843
MseI TTAA 3 cut(s) 56, 279, 917
MspI CCGG 2 cut(s) 331, 643
MspR9I CCNGG 2 cut(s) 331, 643
MunI CAATTG 1 cut(s) 123
MwoI GCNNNNNNNGC 2 cut(s) 269, 401
NciI CCSGG 2 cut(s) 331, 643
NcoI CCATGG 1 cut(s) 273
NdeII GATC 3 cut(s) 20, 346, 898
NlaIII CATG 3 cut(s) 277, 473, 770
NlaIV GGNNCC 4 cut(s) 242, 555, 595, 807
NmuCI GTSAC 2 cut(s) 604, 778
NsbI TGCGCA 1 cut(s) 765
NspV TTCGAA 1 cut(s) 707
PfeI GAWTC 3 cut(s) 144, 491, 773
PflMI CCANNNNNTGG 1 cut(s) 754
PkrI GCNGC 7 cut(s) 36, 77, 136, 286, 418, 466, 691
PleI GAGTC 3 cut(s) 127, 316, 601
PpsI GAGTC 3 cut(s) 127, 316, 601
PpuMI RGGWCCY 1 cut(s) 593
PshAI GACNNNNGTC 1 cut(s) 591
PshBI ATTAAT 1 cut(s) 917
PsiI TTATAA 1 cut(s) 660
Psp124BI GAGCTC 1 cut(s) 510
Psp5II RGGWCCY 1 cut(s) 593
PspN4I GGNNCC 4 cut(s) 242, 555, 595, 807
PspPI GGNCC 3 cut(s) 554, 593, 757
PspPPI RGGWCCY 1 cut(s) 593
PstNI CAGNNNCTG 1 cut(s) 944
PsuI RGATCY 1 cut(s) 20
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
SacI GAGCTC 1 cut(s) 510
SaqAI TTAA 3 cut(s) 56, 279, 917
SatI GCNGC 7 cut(s) 35, 76, 135, 285, 417, 465, 690
Sau3AI GATC 3 cut(s) 20, 346, 898
Sau96I GGNCC 3 cut(s) 554, 593, 757
SchI GAGTC 3 cut(s) 128, 317, 601
ScrFI CCNGG 2 cut(s) 331, 643
SduI GDGCHC 2 cut(s) 487, 510
SfuI TTCGAA 1 cut(s) 707
SinI GGWCC 2 cut(s) 554, 593
SmlI CTYRAG 4 cut(s) 253, 305, 609, 906
SmoI CTYRAG 4 cut(s) 253, 305, 609, 906
Sse9I AATT 6 cut(s) 123, 495, 655, 702, 796, 914
SsiI CCGC 1 cut(s) 416
SspMI CTAG 2 cut(s) 432, 531
SstI GAGCTC 1 cut(s) 510
StyD4I CCNGG 2 cut(s) 329, 641
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 3 cut(s) 317, 543, 877
TaiI ACGT 1 cut(s) 715
TaqI TCGA 2 cut(s) 707, 921
TasI AATT 6 cut(s) 123, 495, 655, 702, 796, 914
TatI WGTACW 1 cut(s) 84
TauI GCSGC 1 cut(s) 419
TfiI GAWTC 3 cut(s) 144, 491, 773
Tru1I TTAA 3 cut(s) 56, 279, 917
Tru9I TTAA 3 cut(s) 56, 279, 917
TscAI CASTG 6 cut(s) 120, 320, 548, 582, 882, 901
TseFI GTSAC 2 cut(s) 604, 778
TseI GCWGC 6 cut(s) 34, 75, 134, 284, 464, 689
Tsp45I GTSAC 2 cut(s) 604, 778
TspDTI ATGAA 2 cut(s) 195, 486
TspGWI ACGGA 1 cut(s) 797
TspRI CASTG 6 cut(s) 120, 320, 548, 582, 882, 901
Van91I CCANNNNNTGG 1 cut(s) 754
VpaK11BI GGWCC 2 cut(s) 554, 593
VspI ATTAAT 1 cut(s) 917
XapI RAATTY 1 cut(s) 702
XspI CTAG 2 cut(s) 432, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.