Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001831

Physical Location & Seq

Genomic Coordinates Forward (+)

73676681 .. 73678427

Gene Structure 1747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G046420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGATTACAACACTGCTTGCAAGGACAAGAAGAAGAAAACCATAGACCAGTCCATGCTGCTCTGCTGCAAGCTCTTCATATCTGAATCGCGTAACCTCGCTGTGCTCGACGCCATTGAACGCGCCGCTAGGCTTGACCCGGAGTCTGTCATTGTTAACAAATTTGAGGACCGAGCTTACAATAGGGTCCGGTATACTATTGTGTCATATGTTCTGCATGACAGCACAGGAAGTGCTATATACAGCCCCTTGCAGCAAACTGTACTAGCCATGGCTGAGGCAGCGTTCGGGGCCATTAACCTCGAGCAGCATTCAGGGGCTCACCCTCGCTTAGGGGTTGTCGATGACATTGTGTTCCACCCTTTGGCAAGAGCATCTCTAGATGAAGCAGCTTGGCTTGCTAAGGCTGTGGCAGTGGACATTGGCAATAAATTCCAAGTTCCAGTATATCTATATGCTGCAGCACACCCTACAGGCAAGGCTCTAGACACCATTAGGCGTGAGCTTGGCTACTACAGGCCAAATTTCATGGGCAACCAATGGGCAGGATGGACCATGCCCGGAGTGCTCCAAGAAAAACCCGATGAAGGCCCGACAACTGTATCTCCTACTCGTGGCATTGCAATGATCGGGGCACGCCCATGGGTTGCCTTGTACAACATACCAATATTGTCCACCGATGTTGCAGCCACTCGAAGGATTGCAAGAATGGTGAGTGCTCGAGGGGGAGGTCTCCCAACTGTGCAAACACTGGGTCTGGTTCATGGTGAGGACTCCACAGAGATAGCTTGTATGCTCTTAGAGCCCAACCAGATTGGAGCGGAGAGAGTCCAGAACCGGGTTGAGATGCTAGCAGCAGAAGAAGGGTTGTACGTAGAGAAGGGTTACTTCACTGATCACTCGCCAGATATGGTAATTGAAAAGTACATGAAACTAATATCTGCAGACAGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005790 GO:0005793 GO:0005794 GO:0005829 GO:0005886 GO:0006082 GO:0006520 GO:0006547 GO:0006548 GO:0006725 GO:0006807 GO:0006996 GO:0007010 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009987 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016054 GO:0016740 GO:0016741 GO:0016742 GO:0016829 GO:0016840 GO:0016841 GO:0019439 GO:0019752 GO:0030407 GO:0030409 GO:0030412 GO:0030868 GO:0031090 GO:0031984 GO:0034641 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046483 GO:0046700 GO:0052803 GO:0052805 GO:0071704 GO:0071840 GO:0071944 GO:0097425 GO:0098588 GO:0098791 GO:0098827 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FTCD_N

Protein Analysis

318

Amino Acids

35.11

Weight (kDa)

6.19

Isoelectric Point (pI)

36.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FTCD_N	PF07837	20 - 213	5.8e-52	Formiminotransferase domain, N-terminal subdomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20830 AT2G20830 AT2G20830 AT2G20830 AT2G20830 AT2G20830
fragaria_vesca	FvH4_6g44860 FvH4_6g44860 FvH4_6g44870 FvH4_6g44870 FvH4_6g44870
malus_domestica	MD09G1092400.v1.1 MD09G1092500.v1.1 MD17G1082500.v1.1
prunus_persica	Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232700_v2.0.a1 Prupe.3G232700_v2.0.a1
pyrus_communis	pycom09g01780 pycom09g01790 pycom17g08050 pycom17g08060
rosa_chinensis	RchiOBHm_Chr2g0162051 RchiOBHm_Chr2g0162061
rosa_laevigata	RLG00000021319
rosa_multiflora	Rmu_co8364399.1_g000001 Rmu_sc0005601.1_g000004 Rmu_sc0005601.1_g000005 Rmu_sc0026966.1_g000002
rosa_roxburghii	Rroxscaffold_2G00088340 Rroxscaffold_2G00088350
rosa_rugosa	Rorug02G0494300
rosa_samantha	Rh2AG560400 Rh2AG560500 Rh2BG573700 Rh2BG573800 Rh2CG544000 Rh2CG544100 Rh2DG583700 Rh2DG583800
rosa_wichuraiana	Rw2G046410 Rw2G046420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	364
AccBSI	CCGCTC	1 cut(s)	821
AccI	GTMKAC	1 cut(s)	194
AccII	CGCG	2 cut(s)	91, 123
AciI	CCGC	2 cut(s)	126, 821
AcsI	RAATTY	3 cut(s)	161, 431, 523
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	4 cut(s)	264, 656, 872, 926
AfiI	CCNNNNNNNGG	6 cut(s)	332, 364, 587, 614, 696, 838
AgsI	TTSAA	2 cut(s)	119, 920
AhdI	GACNNNNNGTC	1 cut(s)	142
AluBI	AGCT	5 cut(s)	73, 176, 392, 505, 788
AluI	AGCT	5 cut(s)	73, 176, 392, 505, 788
Alw21I	GWGCWC	3 cut(s)	108, 570, 721
Alw26I	GTCTC	1 cut(s)	737
Ama87I	CYCGRG	2 cut(s)	302, 720
AoxI	GGCC	3 cut(s)	291, 518, 589
ApoI	RAATTY	3 cut(s)	161, 431, 523
ArsI	GACNNNNNNTTYG	2 cut(s)	739, 771
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	5 cut(s)	169, 187, 291, 552, 590
AsuC2I	CCSGG	3 cut(s)	140, 561, 839
AsuHPI	GGTGA	3 cut(s)	314, 724, 779
AsuNHI	GCTAGC	1 cut(s)	850
AvaI	CYCGRG	2 cut(s)	302, 720
AvaII	GGWCC	3 cut(s)	169, 187, 552
BaeGI	GKGCMC	1 cut(s)	637
BaeI	ACNNNNGTAYC	2 cut(s)	585, 618
BanII	GRGCYC	2 cut(s)	322, 807
BauI	CACGAG	1 cut(s)	612
Bbv12I	GWGCWC	3 cut(s)	108, 570, 721
BbvCI	CCTCAGC	1 cut(s)	276
BccI	CCATC	1 cut(s)	543
BclI	TGATCA	1 cut(s)	895
BcnI	CCSGG	3 cut(s)	140, 561, 839
BcoDI	GTCTC	1 cut(s)	737
BfaI	CTAG	5 cut(s)	129, 266, 380, 485, 851
BfmI	CTRYAG	4 cut(s)	459, 471, 514, 942
Bme1390I	CCNGG	3 cut(s)	140, 561, 839
Bme18I	GGWCC	3 cut(s)	169, 187, 552
BmeRI	GACNNNNNGTC	1 cut(s)	142
BmeT110I	CYCGRG	2 cut(s)	302, 720
BmgT120I	GGNCC	5 cut(s)	169, 187, 291, 552, 590
BmiI	GGNNCC	2 cut(s)	188, 292
BmrFI	CCNGG	3 cut(s)	140, 561, 839
BmrI	ACTGGG	1 cut(s)	761
BmsI	GCATC	2 cut(s)	383, 837
BmtI	GCTAGC	1 cut(s)	854
BmuI	ACTGGG	1 cut(s)	761
Bpu10I	CCTNAGC	3 cut(s)	276, 331, 402
BpuMI	CCSGG	3 cut(s)	140, 561, 839
BsaAI	YACGTR	1 cut(s)	874
BsaHI	GRCGYC	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	737
BsaJI	CCNNGG	2 cut(s)	270, 641
BsaWI	WCCGGW	1 cut(s)	189
BsaXI	ACNNNNNCTCC	2 cut(s)	589, 619
Bsc4I	CCNNNNNNNGG	6 cut(s)	332, 364, 587, 614, 696, 838
Bse1I	ACTGG	3 cut(s)	49, 443, 756
Bse3DI	GCAATG	2 cut(s)	618, 630
BseDI	CCNNGG	2 cut(s)	270, 641
BseGI	GGATG	1 cut(s)	554
BseLI	CCNNNNNNNGG	6 cut(s)	332, 364, 587, 614, 696, 838
BseMI	GCAATG	2 cut(s)	618, 630
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	3 cut(s)	49, 443, 756
BseSI	GKGCMC	1 cut(s)	637
Bsh1236I	CGCG	2 cut(s)	91, 123
BshFI	GGCC	3 cut(s)	293, 520, 591
BsiHKAI	GWGCWC	3 cut(s)	108, 570, 721
BsiHKCI	CYCGRG	2 cut(s)	302, 720
BsiSI	CCGG	4 cut(s)	140, 190, 561, 838
BslI	CCNNNNNNNGG	6 cut(s)	332, 364, 587, 614, 696, 838
BsmAI	GTCTC	1 cut(s)	737
BsmI	GAATGC	1 cut(s)	310
BsnI	GGCC	3 cut(s)	293, 520, 591
Bso31I	GGTCTC	1 cut(s)	737
BsoBI	CYCGRG	2 cut(s)	302, 720
Bsp1286I	GDGCHC	6 cut(s)	108, 322, 570, 637, 721, 807
Bsp1407I	TGTACA	1 cut(s)	654
Bsp143I	GATC	2 cut(s)	627, 895
Bsp19I	CCATGG	2 cut(s)	270, 641
BspACI	CCGC	2 cut(s)	126, 821
BspANI	GGCC	3 cut(s)	293, 520, 591
BspCNI	CTCAG	1 cut(s)	268
BspFNI	CGCG	2 cut(s)	91, 123
BspLI	GGNNCC	2 cut(s)	188, 292
BspMAI	CTGCAG	2 cut(s)	463, 946
BspOI	GCTAGC	1 cut(s)	854
BspQI	GCTCTTC	1 cut(s)	80
BspTNI	GGTCTC	1 cut(s)	737
BsrBI	CCGCTC	1 cut(s)	821
BsrDI	GCAATG	2 cut(s)	618, 630
BsrGI	TGTACA	1 cut(s)	654
BsrI	ACTGG	3 cut(s)	49, 443, 756
BssECI	CCNNGG	2 cut(s)	270, 641
BssMI	GATC	2 cut(s)	627, 895
BssNAI	GTATAC	1 cut(s)	195
BssNI	GRCGYC	1 cut(s)	111
BssSI	CACGAG	1 cut(s)	612
BssT1I	CCWWGG	2 cut(s)	270, 641
Bst1107I	GTATAC	1 cut(s)	195
Bst2BI	CACGAG	1 cut(s)	612
Bst4CI	ACNGT	3 cut(s)	262, 601, 742
Bst6I	CTCTTC	1 cut(s)	80
BstACI	GRCGYC	1 cut(s)	111
BstAUI	TGTACA	1 cut(s)	654
BstBAI	YACGTR	1 cut(s)	874
BstC8I	GCNNGC	5 cut(s)	19, 71, 399, 637, 852
BstDEI	CTNAG	4 cut(s)	276, 331, 402, 799
BstDSI	CCRYGG	2 cut(s)	270, 641
BstENI	CCTNNNNNAGG	1 cut(s)	330
BstF5I	GGATG	1 cut(s)	554
BstFNI	CGCG	2 cut(s)	91, 123
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	2 cut(s)	630, 898
BstMAI	GTCTC	1 cut(s)	737
BstMBI	GATC	2 cut(s)	627, 895
BstMWI	GCNNNNNNNGC	5 cut(s)	281, 290, 398, 565, 802
BstSCI	CCNGG	3 cut(s)	138, 559, 837
BstSFI	CTRYAG	4 cut(s)	459, 471, 514, 942
BstSLI	GKGCMC	1 cut(s)	637
BstSNI	TACGTA	1 cut(s)	874
BstUI	CGCG	2 cut(s)	91, 123
BstZ17I	GTATAC	1 cut(s)	195
BsuRI	GGCC	3 cut(s)	293, 520, 591
BtgI	CCRYGG	2 cut(s)	270, 641
BtsCI	GGATG	1 cut(s)	554
BtsI	GCAGTG	2 cut(s)	12, 420
BtsIMutI	CAGTG	4 cut(s)	12, 420, 749, 891
Cac8I	GCNNGC	5 cut(s)	19, 71, 399, 637, 852
CfoI	GCGC	1 cut(s)	125
Cfr13I	GGNCC	5 cut(s)	169, 187, 291, 552, 590
CseI	GACGC	1 cut(s)	119
Csp6I	GTAC	4 cut(s)	263, 655, 871, 925
CspCI	CAANNNNNGTGG	2 cut(s)	664, 699
CviAII	CATG	8 cut(s)	55, 218, 271, 529, 556, 642, 764, 928
CviQI	GTAC	4 cut(s)	263, 655, 871, 925
DdeI	CTNAG	4 cut(s)	276, 331, 402, 799
DpnI	GATC	2 cut(s)	629, 897
DpnII	GATC	2 cut(s)	627, 895
DriI	GACNNNNNGTC	1 cut(s)	142
Eam1104I	CTCTTC	1 cut(s)	80
Eam1105I	GACNNNNNGTC	1 cut(s)	142
EarI	CTCTTC	1 cut(s)	80
Eco105I	TACGTA	1 cut(s)	874
Eco130I	CCWWGG	2 cut(s)	270, 641
Eco24I	GRGCYC	2 cut(s)	322, 807
Eco31I	GGTCTC	1 cut(s)	737
Eco47I	GGWCC	3 cut(s)	169, 187, 552
Eco88I	CYCGRG	2 cut(s)	302, 720
EcoNI	CCTNNNNNAGG	1 cut(s)	330
EcoT14I	CCWWGG	2 cut(s)	270, 641
EcoT38I	GRGCYC	2 cut(s)	322, 807
ErhI	CCWWGG	2 cut(s)	270, 641
FaeI	CATG	8 cut(s)	58, 221, 274, 532, 559, 645, 767, 931
FalI	AAGNNNNNCTT	2 cut(s)	872, 904
FatI	CATG	8 cut(s)	54, 217, 270, 528, 555, 641, 763, 927
FauNDI	CATATG	1 cut(s)	208
FbaI	TGATCA	1 cut(s)	895
FblI	GTMKAC	1 cut(s)	194
FokI	GGATG	1 cut(s)	561
FriOI	GRGCYC	2 cut(s)	322, 807
FspBI	CTAG	5 cut(s)	129, 266, 380, 485, 851
GlaI	GCGC	1 cut(s)	124
HaeIII	GGCC	3 cut(s)	293, 520, 591
HapII	CCGG	4 cut(s)	140, 190, 561, 838
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	8 cut(s)	58, 221, 274, 532, 559, 645, 767, 931
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	4 cut(s)	86, 143, 773, 828
HpaI	GTTAAC	1 cut(s)	157
HpaII	CCGG	4 cut(s)	140, 190, 561, 838
HphI	GGTGA	3 cut(s)	314, 724, 779
Hpy166II	GTNNAC	4 cut(s)	157, 195, 418, 675
Hpy188I	TCNGA	1 cut(s)	85
Hpy188III	TCNNGA	3 cut(s)	380, 485, 832
Hpy8I	GTNNAC	4 cut(s)	157, 195, 418, 675
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	4 cut(s)	581, 690, 857, 874
HpyCH4III	ACNGT	3 cut(s)	262, 601, 742
HpyCH4IV	ACGT	1 cut(s)	873
HpyF10VI	GCNNNNNNNGC	5 cut(s)	281, 290, 398, 565, 802
HpyF3I	CTNAG	4 cut(s)	276, 331, 402, 799
HpySE526I	ACGT	1 cut(s)	873
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	8 cut(s)	58, 221, 274, 532, 559, 645, 767, 931
HspAI	GCGC	1 cut(s)	123
Ksp22I	TGATCA	1 cut(s)	895
KspAI	GTTAAC	1 cut(s)	157
Kzo9I	GATC	2 cut(s)	627, 895
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	2 cut(s)	573, 818
LweI	GCATC	2 cut(s)	383, 837
MaeI	CTAG	5 cut(s)	129, 266, 380, 485, 851
MaeII	ACGT	1 cut(s)	873
MaeIII	GTNAC	2 cut(s)	92, 884
MalI	GATC	2 cut(s)	629, 897
MbiI	CCGCTC	1 cut(s)	821
MboI	GATC	2 cut(s)	627, 895
MboII	GAAGA	4 cut(s)	43, 46, 67, 872
MhlI	GDGCHC	6 cut(s)	108, 322, 570, 637, 721, 807
MluCI	AATT	4 cut(s)	161, 431, 523, 915
MlyI	GAGTC	3 cut(s)	152, 767, 837
MnlI	CCTC	8 cut(s)	107, 160, 271, 311, 336, 716, 722, 763
MseI	TTAA	2 cut(s)	156, 297
MslI	CAYNNNNRTG	2 cut(s)	623, 640
MspI	CCGG	4 cut(s)	140, 190, 561, 838
MspR9I	CCNGG	3 cut(s)	140, 561, 839
Mva1269I	GAATGC	1 cut(s)	310
MvnI	CGCG	2 cut(s)	91, 123
MwoI	GCNNNNNNNGC	5 cut(s)	281, 290, 398, 565, 802
NciI	CCSGG	3 cut(s)	140, 561, 839
NcoI	CCATGG	2 cut(s)	270, 641
NdeI	CATATG	1 cut(s)	208
NdeII	GATC	2 cut(s)	627, 895
NheI	GCTAGC	1 cut(s)	850
NlaIII	CATG	8 cut(s)	58, 221, 274, 532, 559, 645, 767, 931
NlaIV	GGNNCC	2 cut(s)	188, 292
PaeR7I	CTCGAG	2 cut(s)	302, 720
PciSI	GCTCTTC	1 cut(s)	80
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PctI	GAATGC	1 cut(s)	310
PfeI	GAWTC	1 cut(s)	86
PflMI	CCANNNNNTGG	1 cut(s)	364
PleI	GAGTC	3 cut(s)	151, 767, 836
PpsI	GAGTC	3 cut(s)	151, 767, 836
Ppu21I	YACGTR	1 cut(s)	874
PspN4I	GGNNCC	2 cut(s)	188, 292
PspPI	GGNCC	5 cut(s)	169, 187, 291, 552, 590
PspXI	VCTCGAGB	2 cut(s)	302, 720
PstI	CTGCAG	2 cut(s)	463, 946
RsaI	GTAC	4 cut(s)	264, 656, 872, 926
RsaNI	GTAC	4 cut(s)	263, 655, 871, 925
RseI	CAYNNNNRTG	2 cut(s)	623, 640
SapI	GCTCTTC	1 cut(s)	80
SaqAI	TTAA	2 cut(s)	156, 297
Sau3AI	GATC	2 cut(s)	627, 895
Sau96I	GGNCC	5 cut(s)	169, 187, 291, 552, 590
SchI	GAGTC	3 cut(s)	152, 767, 837
ScrFI	CCNGG	3 cut(s)	140, 561, 839
SduI	GDGCHC	6 cut(s)	108, 322, 570, 637, 721, 807
SetI	ASST	9 cut(s)	75, 99, 178, 303, 394, 507, 733, 790, 876
SfaNI	GCATC	2 cut(s)	383, 837
SfcI	CTRYAG	4 cut(s)	459, 471, 514, 942
Sfr274I	CTCGAG	2 cut(s)	302, 720
SinI	GGWCC	3 cut(s)	169, 187, 552
SlaI	CTCGAG	2 cut(s)	302, 720
SmiMI	CAYNNNNRTG	2 cut(s)	623, 640
SmlI	CTYRAG	2 cut(s)	302, 720
SmoI	CTYRAG	2 cut(s)	302, 720
SnaBI	TACGTA	1 cut(s)	874
Sse9I	AATT	4 cut(s)	161, 431, 523, 915
SsiI	CCGC	2 cut(s)	126, 821
SspI	AATATT	1 cut(s)	669
SspMI	CTAG	5 cut(s)	129, 266, 380, 485, 851
StyD4I	CCNGG	3 cut(s)	138, 559, 837
StyI	CCWWGG	2 cut(s)	270, 641
TaaI	ACNGT	3 cut(s)	262, 601, 742
TaiI	ACGT	1 cut(s)	876
TaqI	TCGA	5 cut(s)	108, 303, 342, 694, 721
TaqII	GACCGA	1 cut(s)	186
TasI	AATT	4 cut(s)	161, 431, 523, 915
TatI	WGTACW	3 cut(s)	262, 654, 924
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	2 cut(s)	156, 297
Tru9I	TTAA	2 cut(s)	156, 297
TscAI	CASTG	4 cut(s)	19, 420, 756, 898
TspDTI	ATGAA	6 cut(s)	67, 399, 517, 600, 752, 944
TspRI	CASTG	4 cut(s)	19, 420, 756, 898
Van91I	CCANNNNNTGG	1 cut(s)	364
VpaK11BI	GGWCC	3 cut(s)	169, 187, 552
XagI	CCTNNNNNAGG	1 cut(s)	330
XapI	RAATTY	3 cut(s)	161, 431, 523
XbaI	TCTAGA	2 cut(s)	379, 484
XhoI	CTCGAG	2 cut(s)	302, 720
XmiI	GTMKAC	1 cut(s)	194
XspI	CTAG	5 cut(s)	129, 266, 380, 485, 851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.