Rroxscaffold_2G00088350

Formiminotransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001831
Physical Location & Seq
Reverse (-)
10306088 .. 10309107
3020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00088350.1

Sequence Viewer

Length: 900 bp
ATGTTAAAATCGATGCTTGGTTGCTGCAAGGTGTACATATCTGAAAGCAGAAATAGGCTTGCACTGGAGTCAATTGAGCGAGCTGCTAAGCGATTCTCGGGAGCACCCATTGTCAATAAGTTTGAGGATGAAACTTACAACAGAGTTGGCTACACTCTTGTCTCTAAGCTGGCTCCAAAGCCATCTGGGGACCTGTGTCCCTTGAGCTTGGCTGTCCTTGCCATGGTTAAGGCTGCTTTAGAAACCATTGACCTTGAGTCGCACTGTGGAAGTCATCCCCGGCTTGGAGTTGTGGATCATATATGCTTTCACCCCCTTCTTGGTGCTTCGTTGGAACAGACGGCTGGTGTTGCAAACTCCTTAGCGGCAGATGTTGGCTCTAGTCTTCAAGTTCCTACATTTCTATATGGAGCTGCCCATGAAGAGAGGAGGACACTTGATTCAATTAGAAGAGAGCTCGGTTACTTCAAGCCAAACTCTAGTGGAGAACAGTGGGTTGGGGGTCCAAAATCTGAATACTTGGCACTGAAGCCAGACAAAGGTCCCCCTAAAGTGACTCAAGAGAAAGGTGTCATTGTGATTGGAGCAACCCGGTGGGTGGATAATTATAATGTCCCTGTCCACTCTACCGATATTGCTGCTGTTCGTAGAATTTCGAAACATGTGAGTGGCAGAGGAGGTGGACTTCCTTCAGTCCAAGCAATGGCCCTTGCGTATGGTGAATCTGTCACGGAGGTAGCTTGCAATTTGTTGGAACCACAGGAAGTGGGAGGAGATAGGGTTCAGCTTGAAGTTGAGAGGCTTGCAGAGGAAGAAGGTTTGACAGTGGGGAAGGGCTACTTCACTGATCTTTCTCAAGAAAAATTAATCGAAAGGTATTTGCAATCAGTTTCTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FTCD_N Yae1_N

Protein Analysis

299

Amino Acids

32.35

Weight (kDa)

6.2

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FTCD_N PF07837 8 - 197 2.9e-53 Formiminotransferase domain, N-terminal subdomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 609
AccB7I CCANNNNNTGG 1 cut(s) 703
AciI CCGC 1 cut(s) 365
AclWI GGATC 1 cut(s) 303
AcsI RAATTY 1 cut(s) 651
AcuI CTGAAG 2 cut(s) 548, 675
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 6 cut(s) 223, 284, 320, 539, 598, 703
AflIII ACRYGT 1 cut(s) 661
AgsI TTSAA 4 cut(s) 389, 444, 469, 791
AhdI GACNNNNNGTC 1 cut(s) 256
AjuI GAANNNNNNNTTGG 2 cut(s) 480, 512
AloI GAACNNNNNNTCC 2 cut(s) 765, 797
AluBI AGCT 7 cut(s) 83, 169, 207, 413, 457, 740, 787
AluI AGCT 7 cut(s) 83, 169, 207, 413, 457, 740, 787
Alw21I GWGCWC 2 cut(s) 106, 459
Alw26I GTCTC 1 cut(s) 166
AlwI GGATC 1 cut(s) 303
AlwNI CAGNNNCTG 1 cut(s) 893
Ama87I CYCGRG 1 cut(s) 97
AoxI GGCC 1 cut(s) 705
ApeKI GCWGC 5 cut(s) 24, 83, 233, 413, 638
ApoI RAATTY 1 cut(s) 651
AseI ATTAAT 1 cut(s) 866
AspS9I GGNCC 4 cut(s) 190, 503, 542, 706
AsuC2I CCSGG 2 cut(s) 280, 592
AsuHPI GGTGA 2 cut(s) 302, 731
AsuII TTCGAA 1 cut(s) 656
AvaI CYCGRG 1 cut(s) 97
AvaII GGWCC 3 cut(s) 190, 503, 542
BanII GRGCYC 1 cut(s) 459
BbsI GAAGAC 1 cut(s) 377
Bbv12I GWGCWC 2 cut(s) 106, 459
BbvI GCAGC 5 cut(s) 11, 70, 220, 400, 625
BccI CCATC 1 cut(s) 190
BceAI ACGGC 1 cut(s) 357
BcgI CGANNNNNNTGC 2 cut(s) 620, 654
BcnI CCSGG 2 cut(s) 280, 592
BcoDI GTCTC 1 cut(s) 166
BfaI CTAG 2 cut(s) 381, 480
BisI GCNGC 6 cut(s) 25, 84, 234, 366, 414, 639
BlpI GCTNAGC 1 cut(s) 87
BlsI GCNGC 6 cut(s) 26, 85, 235, 367, 415, 640
Bme1390I CCNGG 2 cut(s) 280, 592
Bme18I GGWCC 3 cut(s) 190, 503, 542
BmeRI GACNNNNNGTC 1 cut(s) 256
BmeT110I CYCGRG 1 cut(s) 97
BmgT120I GGNCC 4 cut(s) 190, 503, 542, 706
BmiI GGNNCC 5 cut(s) 174, 191, 504, 544, 756
BmrFI CCNGG 2 cut(s) 280, 592
BmsI GCATC 1 cut(s) 3
BoxI GACNNNNGTC 2 cut(s) 195, 540
BpiI GAAGAC 1 cut(s) 377
BpmI CTGGAG 1 cut(s) 86
Bpu10I CCTNAGC 1 cut(s) 361
Bpu1102I GCTNAGC 1 cut(s) 87
Bpu14I TTCGAA 1 cut(s) 656
BpuEI CTTGAG 4 cut(s) 223, 275, 543, 840
BpuMI CCSGG 2 cut(s) 280, 592
Bsa29I ATCGAT 1 cut(s) 11
BsaJI CCNNGG 2 cut(s) 222, 278
BsaXI ACNNNNNCTCC 2 cut(s) 765, 795
Bsc4I CCNNNNNNNGG 6 cut(s) 223, 284, 320, 539, 598, 703
Bse1I ACTGG 1 cut(s) 69
Bse3DI GCAATG 1 cut(s) 708
BseCI ATCGAT 1 cut(s) 11
BseDI CCNNGG 2 cut(s) 222, 278
BseGI GGATG 2 cut(s) 133, 274
BseLI CCNNNNNNNGG 6 cut(s) 223, 284, 320, 539, 598, 703
BseMI GCAATG 1 cut(s) 708
BseNI ACTGG 1 cut(s) 69
BseRI GAGGAG 3 cut(s) 442, 690, 786
BseXI GCAGC 5 cut(s) 11, 70, 220, 400, 625
BshFI GGCC 1 cut(s) 707
BshVI ATCGAT 1 cut(s) 11
BsiHKAI GWGCWC 2 cut(s) 106, 459
BsiHKCI CYCGRG 1 cut(s) 97
BsiSI CCGG 2 cut(s) 280, 592
BslFI GGGAC 4 cut(s) 183, 203, 528, 599
BslI CCNNNNNNNGG 6 cut(s) 223, 284, 320, 539, 598, 703
BsmAI GTCTC 1 cut(s) 166
BsmFI GGGAC 4 cut(s) 183, 203, 528, 599
BsnI GGCC 1 cut(s) 707
BsoBI CYCGRG 1 cut(s) 97
Bsp119I TTCGAA 1 cut(s) 656
Bsp1286I GDGCHC 2 cut(s) 106, 459
Bsp1407I TGTACA 1 cut(s) 33
Bsp143I GATC 2 cut(s) 295, 847
Bsp1720I GCTNAGC 1 cut(s) 87
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 1 cut(s) 365
BspANI GGCC 1 cut(s) 707
BspDI ATCGAT 1 cut(s) 11
BspLI GGNNCC 5 cut(s) 174, 191, 504, 544, 756
BspPI GGATC 1 cut(s) 303
BspT104I TTCGAA 1 cut(s) 656
BsrDI GCAATG 1 cut(s) 708
BsrGI TGTACA 1 cut(s) 33
BsrI ACTGG 1 cut(s) 69
BssECI CCNNGG 2 cut(s) 222, 278
BssMI GATC 2 cut(s) 295, 847
BssT1I CCWWGG 1 cut(s) 222
Bst4CI ACNGT 3 cut(s) 266, 492, 826
Bst6I CTCTTC 2 cut(s) 417, 445
BstAUI TGTACA 1 cut(s) 33
BstBI TTCGAA 1 cut(s) 656
BstC8I GCNNGC 5 cut(s) 60, 81, 171, 742, 804
BstDEI CTNAG 3 cut(s) 87, 165, 361
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 2 cut(s) 133, 274
BstKTI GATC 2 cut(s) 298, 850
BstMAI GTCTC 1 cut(s) 166
BstMBI GATC 2 cut(s) 295, 847
BstMWI GCNNNNNNNGC 2 cut(s) 218, 350
BstNSI RCATGY 1 cut(s) 665
BstPAI GACNNNNGTC 2 cut(s) 195, 540
BstSCI CCNGG 2 cut(s) 278, 590
BstV1I GCAGC 5 cut(s) 11, 70, 220, 400, 625
BstV2I GAAGAC 1 cut(s) 377
Bsu15I ATCGAT 1 cut(s) 11
BsuRI GGCC 1 cut(s) 707
BsuTUI ATCGAT 1 cut(s) 11
BtgI CCRYGG 1 cut(s) 222
BtsCI GGATG 2 cut(s) 133, 274
BtsIMutI CAGTG 6 cut(s) 62, 262, 497, 524, 831, 843
Cac8I GCNNGC 5 cut(s) 60, 81, 171, 742, 804
CaiI CAGNNNCTG 1 cut(s) 893
Cfr13I GGNCC 4 cut(s) 190, 503, 542, 706
ClaI ATCGAT 1 cut(s) 11
Csp6I GTAC 1 cut(s) 34
CviAII CATG 3 cut(s) 223, 419, 662
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 3 cut(s) 87, 165, 361
DpnI GATC 2 cut(s) 297, 849
DpnII GATC 2 cut(s) 295, 847
DriI GACNNNNNGTC 1 cut(s) 256
Eam1104I CTCTTC 2 cut(s) 417, 445
Eam1105I GACNNNNNGTC 1 cut(s) 256
EarI CTCTTC 2 cut(s) 417, 445
Ecl136II GAGCTC 1 cut(s) 457
Eco130I CCWWGG 1 cut(s) 222
Eco24I GRGCYC 1 cut(s) 459
Eco47I GGWCC 3 cut(s) 190, 503, 542
Eco53kI GAGCTC 1 cut(s) 457
Eco57I CTGAAG 2 cut(s) 548, 675
Eco88I CYCGRG 1 cut(s) 97
EcoICRI GAGCTC 1 cut(s) 457
EcoO109I RGGNCCY 2 cut(s) 190, 542
EcoT14I CCWWGG 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 459
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 3 cut(s) 226, 422, 665
FalI AAGNNNNNCTT 2 cut(s) 824, 856
FaqI GGGAC 4 cut(s) 183, 203, 528, 599
FatI CATG 3 cut(s) 222, 418, 661
Fnu4HI GCNGC 6 cut(s) 25, 84, 234, 366, 414, 639
FokI GGATG 2 cut(s) 140, 261
FriOI GRGCYC 1 cut(s) 459
Fsp4HI GCNGC 6 cut(s) 25, 84, 234, 366, 414, 639
FspBI CTAG 2 cut(s) 381, 480
GluI GCNGC 6 cut(s) 25, 84, 234, 366, 414, 639
GsuI CTGGAG 1 cut(s) 86
HaeIII GGCC 1 cut(s) 707
HapII CCGG 2 cut(s) 280, 592
Hin1II CATG 3 cut(s) 226, 422, 665
HinfI GANTC 6 cut(s) 68, 93, 257, 440, 556, 722
HpaII CCGG 2 cut(s) 280, 592
HphI GGTGA 2 cut(s) 302, 731
Hpy166II GTNNAC 3 cut(s) 34, 622, 683
Hpy188I TCNGA 2 cut(s) 43, 514
Hpy188III TCNNGA 3 cut(s) 99, 560, 857
Hpy8I GTNNAC 3 cut(s) 34, 622, 683
HpyAV CCTTC 4 cut(s) 326, 699, 809, 826
HpyCH4III ACNGT 3 cut(s) 266, 492, 826
HpyCH4V TGCA 6 cut(s) 27, 62, 353, 744, 806, 883
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 350
HpyF3I CTNAG 3 cut(s) 87, 165, 361
Hsp92II CATG 3 cut(s) 226, 422, 665
Kzo9I GATC 2 cut(s) 295, 847
LmnI GCTCC 4 cut(s) 101, 178, 410, 584
Lsp1109I GCAGC 5 cut(s) 11, 70, 220, 400, 625
LweI GCATC 1 cut(s) 3
MaeI CTAG 2 cut(s) 381, 480
MaeIII GTNAC 3 cut(s) 461, 553, 727
MalI GATC 2 cut(s) 297, 849
MboI GATC 2 cut(s) 295, 847
MboII GAAGA 4 cut(s) 377, 434, 462, 824
MfeI CAATTG 1 cut(s) 72
MhlI GDGCHC 2 cut(s) 106, 459
MluCI AATT 6 cut(s) 72, 444, 604, 651, 745, 863
MlyI GAGTC 3 cut(s) 77, 266, 550
MmeI TCCRAC 2 cut(s) 312, 732
MnlI CCTC 9 cut(s) 118, 420, 423, 668, 671, 727, 764, 792, 802
MseI TTAA 3 cut(s) 5, 228, 866
MslI CAYNNNNRTG 1 cut(s) 666
MspI CCGG 2 cut(s) 280, 592
MspR9I CCNGG 2 cut(s) 280, 592
MunI CAATTG 1 cut(s) 72
MwoI GCNNNNNNNGC 2 cut(s) 218, 350
NciI CCSGG 2 cut(s) 280, 592
NcoI CCATGG 1 cut(s) 222
NdeII GATC 2 cut(s) 295, 847
NlaIII CATG 3 cut(s) 226, 422, 665
NlaIV GGNNCC 5 cut(s) 174, 191, 504, 544, 756
NmuCI GTSAC 2 cut(s) 553, 727
NspI RCATGY 1 cut(s) 665
NspV TTCGAA 1 cut(s) 656
PciI ACATGT 1 cut(s) 661
PfeI GAWTC 3 cut(s) 93, 440, 722
PflMI CCANNNNNTGG 1 cut(s) 703
PkrI GCNGC 6 cut(s) 26, 85, 235, 367, 415, 640
PleI GAGTC 3 cut(s) 76, 265, 550
PpsI GAGTC 3 cut(s) 76, 265, 550
PpuMI RGGWCCY 2 cut(s) 190, 542
PscI ACATGT 1 cut(s) 661
PshAI GACNNNNGTC 2 cut(s) 195, 540
PshBI ATTAAT 1 cut(s) 866
PsiI TTATAA 1 cut(s) 609
Psp124BI GAGCTC 1 cut(s) 459
Psp5II RGGWCCY 2 cut(s) 190, 542
PspN4I GGNNCC 5 cut(s) 174, 191, 504, 544, 756
PspPI GGNCC 4 cut(s) 190, 503, 542, 706
PspPPI RGGWCCY 2 cut(s) 190, 542
PstNI CAGNNNCTG 1 cut(s) 893
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
RseI CAYNNNNRTG 1 cut(s) 666
SacI GAGCTC 1 cut(s) 459
SaqAI TTAA 3 cut(s) 5, 228, 866
SatI GCNGC 6 cut(s) 25, 84, 234, 366, 414, 639
Sau3AI GATC 2 cut(s) 295, 847
Sau96I GGNCC 4 cut(s) 190, 503, 542, 706
SchI GAGTC 3 cut(s) 77, 266, 550
ScrFI CCNGG 2 cut(s) 280, 592
SduI GDGCHC 2 cut(s) 106, 459
SfaNI GCATC 1 cut(s) 3
SfuI TTCGAA 1 cut(s) 656
SinI GGWCC 3 cut(s) 190, 503, 542
SmiMI CAYNNNNRTG 1 cut(s) 666
SmlI CTYRAG 4 cut(s) 202, 254, 558, 855
SmoI CTYRAG 4 cut(s) 202, 254, 558, 855
Sse9I AATT 6 cut(s) 72, 444, 604, 651, 745, 863
SsiI CCGC 1 cut(s) 365
SspMI CTAG 2 cut(s) 381, 480
SstI GAGCTC 1 cut(s) 459
StyD4I CCNGG 2 cut(s) 278, 590
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 3 cut(s) 266, 492, 826
TaqI TCGA 3 cut(s) 11, 656, 870
TasI AATT 6 cut(s) 72, 444, 604, 651, 745, 863
TatI WGTACW 1 cut(s) 33
TauI GCSGC 1 cut(s) 368
TfiI GAWTC 3 cut(s) 93, 440, 722
Tru1I TTAA 3 cut(s) 5, 228, 866
Tru9I TTAA 3 cut(s) 5, 228, 866
TscAI CASTG 6 cut(s) 69, 269, 497, 531, 831, 850
TseFI GTSAC 2 cut(s) 553, 727
TseI GCWGC 5 cut(s) 24, 83, 233, 413, 638
Tsp45I GTSAC 2 cut(s) 553, 727
TspDTI ATGAA 2 cut(s) 144, 435
TspGWI ACGGA 1 cut(s) 746
TspRI CASTG 6 cut(s) 69, 269, 497, 531, 831, 850
Van91I CCANNNNNTGG 1 cut(s) 703
VpaK11BI GGWCC 3 cut(s) 190, 503, 542
VspI ATTAAT 1 cut(s) 866
XapI RAATTY 1 cut(s) 651
XceI RCATGY 1 cut(s) 665
XspI CTAG 2 cut(s) 381, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.