Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001831

Physical Location & Seq

Genomic Coordinates Forward (+)

62307767 .. 62308849

Gene Structure 1083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0494300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGTGGCGAAGGATGAGTGGACGAGGGCGGCGATGACCGACTGCGTTCTAGTCTTCTGTTCGGATTTGTTCGTGACCGAATTGGAAATCGAAGGTGATGACGGCGATGATATCGGGGTCAAATTCCAATTCGGGGCTAGGTCCGATTCGGATTCGGATAACGATGAATTCAAAAGTGGAGGTAGAAGAGCGGCGGAGGTTACCAGGAGAATGATGAGGTTCTCAGCGACGACGCCGTTTCGGACTTCGAGCAGGACGAGGAGGTTCTCAACGACGACGCCGGCGAGCCCAATTTCTCGCCTGACCTCTAGCTCTTCATCGGAAACCTTCCCCTCACTGTCGCTAACTGAGCTCTTCGAAGGTGCTGGAAATGTTGAGATGGTTGAGATATTTTGGAGCGAAGATGAGTTGGAGATGATGCCCTTAAAGTGGGCCCCATTGTCGAACTTAACAGCCAATTTAGACAGAATGGACACGGTTGAGGAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005790 GO:0005793 GO:0005794 GO:0005829 GO:0005886 GO:0006082 GO:0006520 GO:0006547 GO:0006548 GO:0006725 GO:0006807 GO:0006996 GO:0007010 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009987 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016054 GO:0016740 GO:0016741 GO:0016742 GO:0016829 GO:0016840 GO:0016841 GO:0019439 GO:0019752 GO:0030407 GO:0030409 GO:0030412 GO:0030868 GO:0031090 GO:0031984 GO:0034641 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046483 GO:0046700 GO:0052803 GO:0052805 GO:0071704 GO:0071840 GO:0071944 GO:0097425 GO:0098588 GO:0098791 GO:0098827 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FTCD_N

Protein Analysis

163

Amino Acids

18.25

Weight (kDa)

4.39

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20830 AT2G20830 AT2G20830 AT2G20830 AT2G20830 AT2G20830
fragaria_vesca	FvH4_6g44860 FvH4_6g44860 FvH4_6g44870 FvH4_6g44870 FvH4_6g44870
malus_domestica	MD09G1092400.v1.1 MD09G1092500.v1.1 MD17G1082500.v1.1
prunus_persica	Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232700_v2.0.a1 Prupe.3G232700_v2.0.a1
pyrus_communis	pycom09g01780 pycom09g01790 pycom17g08050 pycom17g08060
rosa_chinensis	RchiOBHm_Chr2g0162051 RchiOBHm_Chr2g0162061
rosa_laevigata	RLG00000021319
rosa_multiflora	Rmu_co8364399.1_g000001 Rmu_sc0005601.1_g000004 Rmu_sc0005601.1_g000005 Rmu_sc0026966.1_g000002
rosa_roxburghii	Rroxscaffold_2G00088340 Rroxscaffold_2G00088350
rosa_rugosa	Rorug02G0494300
rosa_samantha	Rh2AG560400 Rh2AG560500 Rh2BG573700 Rh2BG573800 Rh2CG544000 Rh2CG544100 Rh2DG583700 Rh2DG583800
rosa_wichuraiana	Rw2G046410 Rw2G046420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	191
AciI	CCGC	3 cut(s)	29, 191, 194
AcsI	RAATTY	2 cut(s)	122, 167
AcyI	GRCGYC	2 cut(s)	233, 278
AfiI	CCNNNNNNNGG	2 cut(s)	133, 429
AgsI	TTSAA	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	203
AluBI	AGCT	2 cut(s)	312, 352
AluI	AGCT	2 cut(s)	312, 352
Alw21I	GWGCWC	1 cut(s)	354
AoxI	GGCC	1 cut(s)	432
ApaI	GGGCCC	1 cut(s)	436
ApoI	RAATTY	2 cut(s)	122, 167
AspS9I	GGNCC	3 cut(s)	141, 432, 433
AsuHPI	GGTGA	1 cut(s)	107
AsuII	TTCGAA	1 cut(s)	357
AvaII	GGWCC	1 cut(s)	141
BaeGI	GKGCMC	1 cut(s)	436
BanII	GRGCYC	3 cut(s)	290, 354, 436
BbsI	GAAGAC	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	354
BccI	CCATC	1 cut(s)	373
BceAI	ACGGC	2 cut(s)	118, 220
BciT130I	CCWGG	1 cut(s)	205
BfaI	CTAG	3 cut(s)	50, 138, 309
BisI	GCNGC	2 cut(s)	30, 192
BlsI	GCNGC	2 cut(s)	31, 193
Bme1390I	CCNGG	1 cut(s)	205
Bme18I	GGWCC	1 cut(s)	141
BmgT120I	GGNCC	3 cut(s)	141, 432, 433
BmiI	GGNNCC	2 cut(s)	434, 435
BmrFI	CCNGG	1 cut(s)	205
BmsI	GCATC	1 cut(s)	408
BpiI	GAAGAC	1 cut(s)	46
Bpu14I	TTCGAA	1 cut(s)	357
BsaHI	GRCGYC	2 cut(s)	233, 278
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 429
Bse118I	RCCGGY	1 cut(s)	280
BseBI	CCWGG	1 cut(s)	205
BseGI	GGATG	1 cut(s)	19
BseLI	CCNNNNNNNGG	2 cut(s)	133, 429
BseMII	CTCAG	2 cut(s)	237, 339
BseRI	GAGGAG	1 cut(s)	274
BseSI	GKGCMC	1 cut(s)	436
BshFI	GGCC	1 cut(s)	434
BsiHKAI	GWGCWC	1 cut(s)	354
BsiSI	CCGG	1 cut(s)	281
BslI	CCNNNNNNNGG	2 cut(s)	133, 429
BsnI	GGCC	1 cut(s)	434
Bsp119I	TTCGAA	1 cut(s)	357
Bsp120I	GGGCCC	1 cut(s)	432
Bsp1286I	GDGCHC	3 cut(s)	290, 354, 436
BspACI	CCGC	3 cut(s)	29, 191, 194
BspANI	GGCC	1 cut(s)	434
BspCNI	CTCAG	2 cut(s)	236, 340
BspLI	GGNNCC	2 cut(s)	434, 435
BspQI	GCTCTTC	3 cut(s)	181, 319, 359
BspT104I	TTCGAA	1 cut(s)	357
BsrBI	CCGCTC	1 cut(s)	191
BsrFI	RCCGGY	1 cut(s)	280
BssAI	RCCGGY	1 cut(s)	280
BssNI	GRCGYC	2 cut(s)	233, 278
Bst2UI	CCWGG	1 cut(s)	205
Bst4CI	ACNGT	2 cut(s)	339, 478
Bst6I	CTCTTC	3 cut(s)	181, 319, 359
BstACI	GRCGYC	2 cut(s)	233, 278
BstBI	TTCGAA	1 cut(s)	357
BstC8I	GCNNGC	2 cut(s)	282, 286
BstDEI	CTNAG	2 cut(s)	223, 348
BstEII	GGTNACC	1 cut(s)	199
BstF5I	GGATG	1 cut(s)	19
BstMWI	GCNNNNNNNGC	1 cut(s)	349
BstNI	CCWGG	1 cut(s)	205
BstPI	GGTNACC	1 cut(s)	199
BstSCI	CCNGG	1 cut(s)	203
BstSLI	GKGCMC	1 cut(s)	436
BstV2I	GAAGAC	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	434
BtgZI	GCGATG	2 cut(s)	47, 120
BtsCI	GGATG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	335
Cac8I	GCNNGC	2 cut(s)	282, 286
Cfr10I	RCCGGY	1 cut(s)	280
Cfr13I	GGNCC	3 cut(s)	141, 432, 433
CseI	GACGC	2 cut(s)	241, 286
CviJI	RGCY	6 cut(s)	137, 288, 312, 352, 434, 455
CviKI_1	RGCY	6 cut(s)	137, 288, 312, 352, 434, 455
DdeI	CTNAG	2 cut(s)	223, 348
Eam1104I	CTCTTC	3 cut(s)	181, 319, 359
EarI	CTCTTC	3 cut(s)	181, 319, 359
EciI	GGCGGA	1 cut(s)	209
Ecl136II	GAGCTC	1 cut(s)	352
Eco24I	GRGCYC	3 cut(s)	290, 354, 436
Eco32I	GATATC	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	141
Eco53kI	GAGCTC	1 cut(s)	352
Eco91I	GGTNACC	1 cut(s)	199
EcoICRI	GAGCTC	1 cut(s)	352
EcoO109I	RGGNCCY	1 cut(s)	433
EcoO65I	GGTNACC	1 cut(s)	199
EcoRI	GAATTC	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	203
EcoRV	GATATC	1 cut(s)	112
EcoT38I	GRGCYC	3 cut(s)	290, 354, 436
Fnu4HI	GCNGC	2 cut(s)	30, 192
FokI	GGATG	1 cut(s)	26
FriOI	GRGCYC	3 cut(s)	290, 354, 436
Fsp4HI	GCNGC	2 cut(s)	30, 192
FspBI	CTAG	3 cut(s)	50, 138, 309
GluI	GCNGC	2 cut(s)	30, 192
HaeIII	GGCC	1 cut(s)	434
HapII	CCGG	1 cut(s)	281
HgaI	GACGC	2 cut(s)	241, 286
Hin1I	GRCGYC	2 cut(s)	233, 278
HinfI	GANTC	2 cut(s)	146, 152
HpaII	CCGG	1 cut(s)	281
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	6 cut(s)	64, 145, 151, 157, 243, 322
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	1 cut(s)	21
Hpy99I	CGWCG	4 cut(s)	232, 235, 277, 280
HpyAV	CCTTC	4 cut(s)	4, 86, 337, 353
HpyCH4III	ACNGT	2 cut(s)	339, 478
HpyF10VI	GCNNNNNNNGC	1 cut(s)	349
HpyF3I	CTNAG	2 cut(s)	223, 348
Hsp92I	GRCGYC	2 cut(s)	233, 278
KroI	GCCGGC	1 cut(s)	280
KroNI	GCCGGC	1 cut(s)	282
LguI	GCTCTTC	3 cut(s)	181, 319, 359
LmnI	GCTCC	1 cut(s)	396
LpnPI	CCDG	6 cut(s)	190, 217, 238, 294, 314, 351
LweI	GCATC	1 cut(s)	408
MaeI	CTAG	3 cut(s)	50, 138, 309
MaeIII	GTNAC	2 cut(s)	73, 199
MbiI	CCGCTC	1 cut(s)	191
MboII	GAAGA	5 cut(s)	46, 198, 306, 346, 413
MhlI	GDGCHC	3 cut(s)	290, 354, 436
MluCI	AATT	7 cut(s)	80, 122, 128, 167, 291, 457, 487
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	9 cut(s)	18, 173, 190, 210, 252, 255, 316, 343, 475
MreI	CGCCGGCG	1 cut(s)	280
MroNI	GCCGGC	1 cut(s)	280
MseI	TTAA	2 cut(s)	425, 449
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	205
MvaI	CCWGG	1 cut(s)	205
MwoI	GCNNNNNNNGC	1 cut(s)	349
NaeI	GCCGGC	1 cut(s)	282
NgoMIV	GCCGGC	1 cut(s)	280
NlaIV	GGNNCC	2 cut(s)	434, 435
NmuCI	GTSAC	1 cut(s)	73
NspV	TTCGAA	1 cut(s)	357
PciSI	GCTCTTC	3 cut(s)	181, 319, 359
PcsI	WCGNNNNNNNCGW	3 cut(s)	29, 254, 281
PdiI	GCCGGC	1 cut(s)	282
PfeI	GAWTC	2 cut(s)	146, 152
PkrI	GCNGC	2 cut(s)	31, 193
Psp124BI	GAGCTC	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	203
PspEI	GGTNACC	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	203
PspN4I	GGNNCC	2 cut(s)	434, 435
PspOMI	GGGCCC	1 cut(s)	432
PspPI	GGNCC	3 cut(s)	141, 432, 433
SacI	GAGCTC	1 cut(s)	354
SapI	GCTCTTC	3 cut(s)	181, 319, 359
SaqAI	TTAA	2 cut(s)	425, 449
SatI	GCNGC	2 cut(s)	30, 192
Sau96I	GGNCC	3 cut(s)	141, 432, 433
ScrFI	CCNGG	1 cut(s)	205
SduI	GDGCHC	3 cut(s)	290, 354, 436
SfaNI	GCATC	1 cut(s)	408
SfuI	TTCGAA	1 cut(s)	357
SgrAI	CRCCGGYG	1 cut(s)	280
SinI	GGWCC	1 cut(s)	141
Sse9I	AATT	7 cut(s)	80, 122, 128, 167, 291, 457, 487
SsiI	CCGC	3 cut(s)	29, 191, 194
SspMI	CTAG	3 cut(s)	50, 138, 309
SstI	GAGCTC	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	203
TaaI	ACNGT	2 cut(s)	339, 478
TaqI	TCGA	4 cut(s)	90, 248, 357, 443
TaqII	GACCGA	2 cut(s)	53, 92
TasI	AATT	7 cut(s)	80, 122, 128, 167, 291, 457, 487
TauI	GCSGC	2 cut(s)	32, 194
TfiI	GAWTC	2 cut(s)	146, 152
Tru1I	TTAA	2 cut(s)	425, 449
Tru9I	TTAA	2 cut(s)	425, 449
TscAI	CASTG	1 cut(s)	342
TseFI	GTSAC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	2 cut(s)	180, 306
TspRI	CASTG	1 cut(s)	342
VpaK11BI	GGWCC	1 cut(s)	141
XapI	RAATTY	2 cut(s)	122, 167
XspI	CTAG	3 cut(s)	50, 138, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.