FvH4_6g44860

Formiminotransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001831
Physical Location & Seq
Forward (+)
34509005 .. 34512084
3080 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44860.t2

Sequence Viewer

Length: 909 bp
ATGTTAAAATCGATGCTTGGTTGCTGCAAGGTGTACATATCAGAAAGCAGAAACAAGCTTGCACTGGAGTCAATTGAGCAGGCTGCTAAGCGATTCTCAGAAGCACCCGTTGTCAATAAGTTTGAAGATGAAACCTACAATAGAGTTGGCTACACTCTTGTCTCTAAGCTGGCTCCTAAGCCATCTGGGGACCCTTGTCCCTTAAGGATGGCTGTCCTTGCCATGGTTAAGGCTGCTTTTGAAACCATTGACCTTGAGTCGCACTGTGGAAGTCATCCTCGGCTTGGAGTTGTGGATCATATATGCTTTCACCCCCTTCTGGATGCTTCGTTGGAACAGATGGCTGGTGTTGCAAACTCCTTGGCGGAAGACGTTGGCTCTAGTCTTCAAGTCCCTACATTTCTTTATGGAGCTGCCCATGAAGAGAGGAGGACACTTGATTCAATTAGAAGAGAGCTCGGTTACTTCAAGCCAAACTCCAGCGGAGAACAGTGGGTTGGGGGTCCAAAATCAGAATACTTGGCACTGAAGCCAGACAAGGGTCCCCTTCAAGTGACTCAAGAGAAAGGTGTCATTGTGATTGGAGCAACCCGGTGGGTGGATAACTATAATGTCCCTGTCCACTCTACTGATATCGCTGTTGTTCGTAGAATTTCAAAACGTGTGAGTGGCAGAGGAGGTGGACTTCCTTCAGTCCAAGCCATGGCACTCGCGCATGGTGAATCTGTCACGGAGGTAGCTTGCAATTTGTTGGAACCACAGGAAGTGGGAGGAGATAGGGTTCAGCTTGAAGTCGAAAGGCTTGCAAAGGAAGAAGGTTTGACAGTGGGGAAGGGCTACTTCACTGATCTTTATCAGGAAAAGTTAATTGAAAGGTATTTGCAGTCAGTTTCTGCTGAAGAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FTCD_N Yae1_N

Protein Analysis

303

Amino Acids

33.1

Weight (kDa)

5.88

Isoelectric Point (pI)

45.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FTCD_N PF07837 16 - 205 1.9e-54 Formiminotransferase domain, N-terminal subdomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 703
AccII CGCG 1 cut(s) 713
AciI CCGC 2 cut(s) 365, 483
AclWI GGATC 1 cut(s) 303
AcsI RAATTY 1 cut(s) 651
AcuI CTGAAG 2 cut(s) 548, 675
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 6 cut(s) 223, 284, 319, 539, 598, 703
AflII CTTAAG 1 cut(s) 202
AflIII ACRYGT 1 cut(s) 661
AgsI TTSAA 9 cut(s) 125, 242, 389, 444, 469, 551, 657, 791, 872
AhdI GACNNNNNGTC 1 cut(s) 256
AjuI GAANNNNNNNTTGG 2 cut(s) 480, 512
AloI GAACNNNNNNTCC 2 cut(s) 765, 797
AluBI AGCT 6 cut(s) 58, 169, 413, 457, 740, 787
AluI AGCT 6 cut(s) 58, 169, 413, 457, 740, 787
Alw21I GWGCWC 1 cut(s) 459
Alw26I GTCTC 1 cut(s) 166
AlwI GGATC 1 cut(s) 303
AlwNI CAGNNNCTG 1 cut(s) 893
ApeKI GCWGC 4 cut(s) 24, 83, 233, 413
ApoI RAATTY 1 cut(s) 651
AspLEI GCGC 1 cut(s) 715
AspS9I GGNCC 3 cut(s) 190, 503, 542
AsuC2I CCSGG 1 cut(s) 592
AsuHPI GGTGA 2 cut(s) 302, 731
AvaII GGWCC 3 cut(s) 190, 503, 542
BanII GRGCYC 1 cut(s) 459
BbsI GAAGAC 2 cut(s) 375, 377
Bbv12I GWGCWC 1 cut(s) 459
BbvI GCAGC 4 cut(s) 11, 70, 220, 400
BccI CCATC 3 cut(s) 190, 202, 334
BcgI CGANNNNNNTGC 2 cut(s) 785, 819
BcnI CCSGG 1 cut(s) 592
BcoDI GTCTC 1 cut(s) 166
BfaI CTAG 1 cut(s) 381
BfrI CTTAAG 1 cut(s) 202
BisI GCNGC 4 cut(s) 25, 84, 234, 414
BlpI GCTNAGC 1 cut(s) 87
BlsI GCNGC 4 cut(s) 26, 85, 235, 415
Bme1390I CCNGG 1 cut(s) 592
Bme18I GGWCC 3 cut(s) 190, 503, 542
BmeRI GACNNNNNGTC 1 cut(s) 256
BmgT120I GGNCC 3 cut(s) 190, 503, 542
BmiI GGNNCC 7 cut(s) 174, 191, 192, 504, 543, 544, 756
BmrFI CCNGG 1 cut(s) 592
BmsI GCATC 2 cut(s) 3, 313
BoxI GACNNNNGTC 2 cut(s) 195, 540
BpiI GAAGAC 2 cut(s) 375, 377
BpmI CTGGAG 2 cut(s) 86, 463
Bpu10I CCTNAGC 1 cut(s) 177
Bpu1102I GCTNAGC 1 cut(s) 87
BpuEI CTTGAG 2 cut(s) 275, 543
BpuMI CCSGG 1 cut(s) 592
Bsa29I ATCGAT 1 cut(s) 11
BsaBI GATNNNNATC 1 cut(s) 852
BsaJI CCNNGG 4 cut(s) 222, 278, 360, 702
BsaXI ACNNNNNCTCC 2 cut(s) 765, 795
Bsc4I CCNNNNNNNGG 6 cut(s) 223, 284, 319, 539, 598, 703
Bse1I ACTGG 1 cut(s) 69
Bse8I GATNNNNATC 1 cut(s) 852
BseCI ATCGAT 1 cut(s) 11
BseDI CCNNGG 4 cut(s) 222, 278, 360, 702
BseGI GGATG 3 cut(s) 213, 274, 328
BseJI GATNNNNATC 1 cut(s) 852
BseLI CCNNNNNNNGG 6 cut(s) 223, 284, 319, 539, 598, 703
BseMII CTCAG 1 cut(s) 111
BseNI ACTGG 1 cut(s) 69
BseRI GAGGAG 3 cut(s) 442, 690, 786
BseXI GCAGC 4 cut(s) 11, 70, 220, 400
Bsh1236I CGCG 1 cut(s) 713
BshVI ATCGAT 1 cut(s) 11
BsiHKAI GWGCWC 1 cut(s) 459
BsiSI CCGG 1 cut(s) 592
BslFI GGGAC 5 cut(s) 183, 203, 377, 528, 599
BslI CCNNNNNNNGG 6 cut(s) 223, 284, 319, 539, 598, 703
BsmAI GTCTC 1 cut(s) 166
BsmFI GGGAC 5 cut(s) 183, 203, 377, 528, 599
Bsp1286I GDGCHC 1 cut(s) 459
Bsp1407I TGTACA 1 cut(s) 33
Bsp143I GATC 2 cut(s) 295, 847
Bsp1720I GCTNAGC 1 cut(s) 87
Bsp19I CCATGG 2 cut(s) 222, 702
BspACI CCGC 2 cut(s) 365, 483
BspCNI CTCAG 1 cut(s) 110
BspDI ATCGAT 1 cut(s) 11
BspFNI CGCG 1 cut(s) 713
BspLI GGNNCC 7 cut(s) 174, 191, 192, 504, 543, 544, 756
BspPI GGATC 1 cut(s) 303
BspTI CTTAAG 1 cut(s) 202
BsrGI TGTACA 1 cut(s) 33
BsrI ACTGG 1 cut(s) 69
BssECI CCNNGG 4 cut(s) 222, 278, 360, 702
BssMI GATC 2 cut(s) 295, 847
BssT1I CCWWGG 3 cut(s) 222, 360, 702
Bst4CI ACNGT 3 cut(s) 266, 492, 826
Bst6I CTCTTC 3 cut(s) 417, 445, 894
BstAFI CTTAAG 1 cut(s) 202
BstAUI TGTACA 1 cut(s) 33
BstC8I GCNNGC 5 cut(s) 60, 81, 171, 742, 804
BstDEI CTNAG 4 cut(s) 87, 97, 165, 177
BstDSI CCRYGG 2 cut(s) 222, 702
BstF5I GGATG 3 cut(s) 213, 274, 328
BstFNI CGCG 1 cut(s) 713
BstHHI GCGC 1 cut(s) 715
BstKTI GATC 2 cut(s) 298, 850
BstMAI GTCTC 1 cut(s) 166
BstMBI GATC 2 cut(s) 295, 847
BstMWI GCNNNNNNNGC 2 cut(s) 218, 350
BstPAI GACNNNNGTC 2 cut(s) 195, 540
BstSCI CCNGG 1 cut(s) 590
BstUI CGCG 1 cut(s) 713
BstV1I GCAGC 4 cut(s) 11, 70, 220, 400
BstV2I GAAGAC 2 cut(s) 375, 377
Bsu15I ATCGAT 1 cut(s) 11
BsuTUI ATCGAT 1 cut(s) 11
BtgI CCRYGG 2 cut(s) 222, 702
BtsCI GGATG 3 cut(s) 213, 274, 328
BtsIMutI CAGTG 6 cut(s) 62, 262, 497, 524, 831, 843
Cac8I GCNNGC 5 cut(s) 60, 81, 171, 742, 804
CaiI CAGNNNCTG 1 cut(s) 893
CfoI GCGC 1 cut(s) 715
Cfr13I GGNCC 3 cut(s) 190, 503, 542
ClaI ATCGAT 1 cut(s) 11
Csp6I GTAC 1 cut(s) 34
CviAII CATG 4 cut(s) 223, 419, 703, 716
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 4 cut(s) 87, 97, 165, 177
DpnI GATC 2 cut(s) 297, 849
DpnII GATC 2 cut(s) 295, 847
DriI GACNNNNNGTC 1 cut(s) 256
Eam1104I CTCTTC 3 cut(s) 417, 445, 894
Eam1105I GACNNNNNGTC 1 cut(s) 256
EarI CTCTTC 3 cut(s) 417, 445, 894
EciI GGCGGA 1 cut(s) 380
Ecl136II GAGCTC 1 cut(s) 457
Eco130I CCWWGG 3 cut(s) 222, 360, 702
Eco24I GRGCYC 1 cut(s) 459
Eco32I GATATC 1 cut(s) 634
Eco47I GGWCC 3 cut(s) 190, 503, 542
Eco53kI GAGCTC 1 cut(s) 457
Eco57I CTGAAG 2 cut(s) 548, 675
EcoICRI GAGCTC 1 cut(s) 457
EcoO109I RGGNCCY 2 cut(s) 190, 542
EcoRV GATATC 1 cut(s) 634
EcoT14I CCWWGG 3 cut(s) 222, 360, 702
EcoT38I GRGCYC 1 cut(s) 459
ErhI CCWWGG 3 cut(s) 222, 360, 702
FaeI CATG 4 cut(s) 226, 422, 706, 719
FalI AAGNNNNNCTT 2 cut(s) 824, 856
FaqI GGGAC 5 cut(s) 183, 203, 377, 528, 599
FatI CATG 4 cut(s) 222, 418, 702, 715
Fnu4HI GCNGC 4 cut(s) 25, 84, 234, 414
FokI GGATG 3 cut(s) 220, 261, 335
FriOI GRGCYC 1 cut(s) 459
Fsp4HI GCNGC 4 cut(s) 25, 84, 234, 414
FspBI CTAG 1 cut(s) 381
GlaI GCGC 1 cut(s) 714
GluI GCNGC 4 cut(s) 25, 84, 234, 414
GsuI CTGGAG 2 cut(s) 86, 463
HapII CCGG 1 cut(s) 592
HhaI GCGC 1 cut(s) 715
Hin1II CATG 4 cut(s) 226, 422, 706, 719
Hin6I GCGC 1 cut(s) 713
HinP1I GCGC 1 cut(s) 713
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 6 cut(s) 68, 93, 257, 440, 556, 722
HpaII CCGG 1 cut(s) 592
HphI GGTGA 2 cut(s) 302, 731
Hpy166II GTNNAC 3 cut(s) 34, 622, 683
Hpy188I TCNGA 3 cut(s) 43, 100, 514
Hpy188III TCNNGA 3 cut(s) 320, 560, 857
Hpy8I GTNNAC 3 cut(s) 34, 622, 683
HpyAV CCTTC 5 cut(s) 326, 557, 699, 809, 826
HpyCH4III ACNGT 3 cut(s) 266, 492, 826
HpyCH4IV ACGT 2 cut(s) 372, 661
HpyCH4V TGCA 6 cut(s) 27, 62, 353, 744, 806, 883
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 350
HpyF3I CTNAG 4 cut(s) 87, 97, 165, 177
HpySE526I ACGT 2 cut(s) 372, 661
Hsp92II CATG 4 cut(s) 226, 422, 706, 719
HspAI GCGC 1 cut(s) 713
KflI GGGWCCC 2 cut(s) 190, 542
Kzo9I GATC 2 cut(s) 295, 847
LmnI GCTCC 3 cut(s) 178, 410, 584
Lsp1109I GCAGC 4 cut(s) 11, 70, 220, 400
LweI GCATC 2 cut(s) 3, 313
MaeI CTAG 1 cut(s) 381
MaeII ACGT 2 cut(s) 372, 661
MaeIII GTNAC 3 cut(s) 461, 553, 727
MalI GATC 2 cut(s) 297, 849
MboI GATC 2 cut(s) 295, 847
MboII GAAGA 6 cut(s) 137, 377, 380, 434, 462, 824
MfeI CAATTG 1 cut(s) 72
MhlI GDGCHC 1 cut(s) 459
MluCI AATT 5 cut(s) 72, 444, 651, 745, 867
MlyI GAGTC 3 cut(s) 77, 266, 550
MmeI TCCRAC 2 cut(s) 312, 732
MnlI CCTC 7 cut(s) 288, 420, 423, 668, 671, 727, 764
MseI TTAA 4 cut(s) 5, 203, 228, 866
MspA1I CMGCKG 1 cut(s) 483
MspCI CTTAAG 1 cut(s) 202
MspI CCGG 1 cut(s) 592
MspR9I CCNGG 1 cut(s) 592
MunI CAATTG 1 cut(s) 72
MvnI CGCG 1 cut(s) 713
MwoI GCNNNNNNNGC 2 cut(s) 218, 350
NciI CCSGG 1 cut(s) 592
NcoI CCATGG 2 cut(s) 222, 702
NdeII GATC 2 cut(s) 295, 847
NlaIII CATG 4 cut(s) 226, 422, 706, 719
NlaIV GGNNCC 7 cut(s) 174, 191, 192, 504, 543, 544, 756
NmeAIII GCCGAG 1 cut(s) 259
NmuCI GTSAC 2 cut(s) 553, 727
PfeI GAWTC 3 cut(s) 93, 440, 722
PflMI CCANNNNNTGG 1 cut(s) 703
PkrI GCNGC 4 cut(s) 26, 85, 235, 415
PleI GAGTC 3 cut(s) 76, 265, 550
PpsI GAGTC 3 cut(s) 76, 265, 550
PpuMI RGGWCCY 2 cut(s) 190, 542
PshAI GACNNNNGTC 2 cut(s) 195, 540
Psp124BI GAGCTC 1 cut(s) 459
Psp5II RGGWCCY 2 cut(s) 190, 542
PspN4I GGNNCC 7 cut(s) 174, 191, 192, 504, 543, 544, 756
PspPI GGNCC 3 cut(s) 190, 503, 542
PspPPI RGGWCCY 2 cut(s) 190, 542
PstNI CAGNNNCTG 1 cut(s) 893
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SacI GAGCTC 1 cut(s) 459
SaqAI TTAA 4 cut(s) 5, 203, 228, 866
SatI GCNGC 4 cut(s) 25, 84, 234, 414
Sau3AI GATC 2 cut(s) 295, 847
Sau96I GGNCC 3 cut(s) 190, 503, 542
SchI GAGTC 3 cut(s) 77, 266, 550
ScrFI CCNGG 1 cut(s) 592
SduI GDGCHC 1 cut(s) 459
SfaNI GCATC 2 cut(s) 3, 313
SinI GGWCC 3 cut(s) 190, 503, 542
SmlI CTYRAG 3 cut(s) 202, 254, 558
SmoI CTYRAG 3 cut(s) 202, 254, 558
Sse9I AATT 5 cut(s) 72, 444, 651, 745, 867
SsiI CCGC 2 cut(s) 365, 483
SspMI CTAG 1 cut(s) 381
SstI GAGCTC 1 cut(s) 459
StyD4I CCNGG 1 cut(s) 590
StyI CCWWGG 3 cut(s) 222, 360, 702
TaaI ACNGT 3 cut(s) 266, 492, 826
TaiI ACGT 2 cut(s) 375, 664
TaqI TCGA 2 cut(s) 11, 795
TasI AATT 5 cut(s) 72, 444, 651, 745, 867
TatI WGTACW 1 cut(s) 33
TfiI GAWTC 3 cut(s) 93, 440, 722
Tru1I TTAA 4 cut(s) 5, 203, 228, 866
Tru9I TTAA 4 cut(s) 5, 203, 228, 866
TscAI CASTG 6 cut(s) 69, 269, 497, 531, 831, 850
TseFI GTSAC 2 cut(s) 553, 727
TseI GCWGC 4 cut(s) 24, 83, 233, 413
Tsp45I GTSAC 2 cut(s) 553, 727
TspDTI ATGAA 2 cut(s) 144, 435
TspGWI ACGGA 1 cut(s) 746
TspRI CASTG 6 cut(s) 69, 269, 497, 531, 831, 850
Van91I CCANNNNNTGG 1 cut(s) 703
Vha464I CTTAAG 1 cut(s) 202
VpaK11BI GGWCC 3 cut(s) 190, 503, 542
XapI RAATTY 1 cut(s) 651
XspI CTAG 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.