MD17G1082500.v1.1

Formiminotransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0001831
Physical Location & Seq
Reverse (-)
6886208 .. 6891819
5612 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1082500.v1.1.491

Sequence Viewer

Length: 504 bp
ATGGTTAAAGCTGCTTTTGAAACAATTGATCTCAAGTCGCATTTTGGAAGTCATCCCCGGCTTGGAGTTGTGGATCGTATTTGCTTTCATCCCCTGCTTGGTGCTTCTTTGGACCATGTTGCTGGGGTTGCAAACTCTTTGGCTGAAGATGTTGGTTCTAGTCTTCAAGTCCCTACTTTTCTCTATGGAGCTGCCCATGAAGAGGGAAGAACACTTGATGCTGTCAGAAGAGAGTTAGGTTATTTCAAGCCGAATTCTGGTGGAGAACAGTGGGTTGGGGAACCGAAATCAAATTACTTGGCGCTGAAGCCAGACTACAAGGGTCCTCCTCAAGTAACTCAAGGAAAAGGTGTCATTGTGATTGGAGCAACCCGGTGGGTTGATAACTATAATGTTCCCGTCATCTCTACTGATATCGCTTTTGTTCGTAGAATTGCAAAACGCGTGAGCGGCAGAGGGAGTGGTCTTGCTTCGGTTCTAAGCCATGGCACTTGCGCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FTCD_N Yae1_N

Protein Analysis

168

Amino Acids

17.96

Weight (kDa)

8.95

Isoelectric Point (pI)

19.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FTCD_N PF07837 1 - 124 6.7e-31 Formiminotransferase domain, N-terminal subdomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 496
AccBSI CCGCTC 1 cut(s) 450
AccII CGCG 1 cut(s) 444
AciI CCGC 1 cut(s) 450
AclWI GGATC 1 cut(s) 81
AcsI RAATTY 1 cut(s) 253
AcuI CTGAAG 2 cut(s) 165, 326
AfiI CCNNNNNNNGG 4 cut(s) 62, 98, 202, 257
AflIII ACRYGT 1 cut(s) 442
AgsI TTSAA 3 cut(s) 20, 167, 247
AjuI GAANNNNNNNTTGG 2 cut(s) 258, 290
AluBI AGCT 2 cut(s) 11, 191
AluI AGCT 2 cut(s) 11, 191
AlwI GGATC 1 cut(s) 81
ApeKI GCWGC 2 cut(s) 11, 191
ApoI RAATTY 1 cut(s) 253
AspLEI GCGC 2 cut(s) 304, 497
AspS9I GGNCC 2 cut(s) 112, 323
AsuC2I CCSGG 2 cut(s) 58, 373
AvaII GGWCC 2 cut(s) 112, 323
BarI GAAGNNNNNNTAC 2 cut(s) 299, 331
BbsI GAAGAC 1 cut(s) 155
BbvI GCAGC 1 cut(s) 178
BcnI CCSGG 2 cut(s) 58, 373
BfaI CTAG 1 cut(s) 159
BfoI RGCGCY 1 cut(s) 305
BisI GCNGC 3 cut(s) 12, 192, 451
BlsI GCNGC 3 cut(s) 13, 193, 452
Bme1390I CCNGG 2 cut(s) 58, 373
Bme18I GGWCC 2 cut(s) 112, 323
BmgT120I GGNCC 2 cut(s) 112, 323
BmiI GGNNCC 2 cut(s) 282, 324
BmrFI CCNGG 2 cut(s) 58, 373
BmsI GCATC 1 cut(s) 208
BpiI GAAGAC 1 cut(s) 155
BpuEI CTTGAG 3 cut(s) 17, 315, 324
BpuMI CCSGG 2 cut(s) 58, 373
BsaJI CCNNGG 2 cut(s) 56, 484
Bsc4I CCNNNNNNNGG 4 cut(s) 62, 98, 202, 257
BseDI CCNNGG 2 cut(s) 56, 484
BseGI GGATG 2 cut(s) 52, 88
BseLI CCNNNNNNNGG 4 cut(s) 62, 98, 202, 257
BseRI GAGGAG 1 cut(s) 318
BseXI GCAGC 1 cut(s) 178
BseYI CCCAGC 1 cut(s) 122
Bsh1236I CGCG 1 cut(s) 444
BsiSI CCGG 2 cut(s) 58, 373
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 4 cut(s) 62, 98, 202, 257
BsmFI GGGAC 1 cut(s) 155
Bsp143I GATC 2 cut(s) 28, 73
Bsp19I CCATGG 1 cut(s) 484
BspACI CCGC 1 cut(s) 450
BspFNI CGCG 1 cut(s) 444
BspLI GGNNCC 2 cut(s) 282, 324
BspPI GGATC 1 cut(s) 81
BsrBI CCGCTC 1 cut(s) 450
BssECI CCNNGG 2 cut(s) 56, 484
BssMI GATC 2 cut(s) 28, 73
BssT1I CCWWGG 1 cut(s) 484
Bst4CI ACNGT 1 cut(s) 270
Bst6I CTCTTC 2 cut(s) 195, 223
BstDEI CTNAG 1 cut(s) 479
BstDSI CCRYGG 1 cut(s) 484
BstF5I GGATG 2 cut(s) 52, 88
BstFNI CGCG 1 cut(s) 444
BstH2I RGCGCY 1 cut(s) 305
BstHHI GCGC 2 cut(s) 304, 497
BstKTI GATC 2 cut(s) 31, 76
BstMBI GATC 2 cut(s) 28, 73
BstMWI GCNNNNNNNGC 2 cut(s) 128, 450
BstSCI CCNGG 2 cut(s) 56, 371
BstUI CGCG 1 cut(s) 444
BstV1I GCAGC 1 cut(s) 178
BstV2I GAAGAC 1 cut(s) 155
BstXI CCANNNNNNTGG 1 cut(s) 122
BtgI CCRYGG 1 cut(s) 484
BtsCI GGATG 2 cut(s) 52, 88
BtsIMutI CAGTG 1 cut(s) 275
CfoI GCGC 2 cut(s) 304, 497
Cfr13I GGNCC 2 cut(s) 112, 323
CviAII CATG 4 cut(s) 116, 197, 485, 498
CviJI RGCY 7 cut(s) 11, 61, 143, 191, 250, 310, 483
CviKI_1 RGCY 7 cut(s) 11, 61, 143, 191, 250, 310, 483
DdeI CTNAG 1 cut(s) 479
DpnI GATC 2 cut(s) 30, 75
DpnII GATC 2 cut(s) 28, 73
Eam1104I CTCTTC 2 cut(s) 195, 223
EarI CTCTTC 2 cut(s) 195, 223
Eco130I CCWWGG 1 cut(s) 484
Eco32I GATATC 1 cut(s) 415
Eco47I GGWCC 2 cut(s) 112, 323
Eco57I CTGAAG 2 cut(s) 165, 326
EcoO109I RGGNCCY 1 cut(s) 323
EcoRI GAATTC 1 cut(s) 253
EcoRV GATATC 1 cut(s) 415
EcoT14I CCWWGG 1 cut(s) 484
ErhI CCWWGG 1 cut(s) 484
FaeI CATG 4 cut(s) 119, 200, 488, 501
FaiI YATR 6 cut(s) 117, 186, 198, 390, 486, 499
FaqI GGGAC 1 cut(s) 155
FatI CATG 4 cut(s) 115, 196, 484, 497
Fnu4HI GCNGC 3 cut(s) 12, 192, 451
FokI GGATG 2 cut(s) 39, 75
Fsp4HI GCNGC 3 cut(s) 12, 192, 451
FspBI CTAG 1 cut(s) 159
FspI TGCGCA 1 cut(s) 496
GlaI GCGC 2 cut(s) 303, 496
GluI GCNGC 3 cut(s) 12, 192, 451
GsaI CCCAGC 1 cut(s) 126
HaeII RGCGCY 1 cut(s) 305
HapII CCGG 2 cut(s) 58, 373
HhaI GCGC 2 cut(s) 304, 497
Hin1II CATG 4 cut(s) 119, 200, 488, 501
Hin6I GCGC 2 cut(s) 302, 495
HinP1I GCGC 2 cut(s) 302, 495
HpaII CCGG 2 cut(s) 58, 373
Hpy188I TCNGA 1 cut(s) 227
HpyCH4III ACNGT 1 cut(s) 270
HpyCH4V TGCA 2 cut(s) 131, 437
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 450
HpyF3I CTNAG 1 cut(s) 479
Hsp92II CATG 4 cut(s) 119, 200, 488, 501
HspAI GCGC 2 cut(s) 302, 495
Kzo9I GATC 2 cut(s) 28, 73
LmnI GCTCC 2 cut(s) 188, 365
LpnPI CCDG 6 cut(s) 71, 107, 108, 243, 324, 386
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 1 cut(s) 208
MaeI CTAG 1 cut(s) 159
MaeIII GTNAC 1 cut(s) 334
MalI GATC 2 cut(s) 30, 75
MbiI CCGCTC 1 cut(s) 450
MboI GATC 2 cut(s) 28, 73
MboII GAAGA 5 cut(s) 155, 158, 212, 219, 240
MfeI CAATTG 1 cut(s) 24
MluCI AATT 4 cut(s) 24, 253, 292, 432
MluI ACGCGT 1 cut(s) 442
MnlI CCTC 4 cut(s) 196, 336, 339, 449
MseI TTAA 1 cut(s) 6
MspI CCGG 2 cut(s) 58, 373
MspR9I CCNGG 2 cut(s) 58, 373
MunI CAATTG 1 cut(s) 24
MvnI CGCG 1 cut(s) 444
MwoI GCNNNNNNNGC 2 cut(s) 128, 450
NciI CCSGG 2 cut(s) 58, 373
NcoI CCATGG 1 cut(s) 484
NdeII GATC 2 cut(s) 28, 73
NlaIII CATG 4 cut(s) 119, 200, 488, 501
NlaIV GGNNCC 2 cut(s) 282, 324
NsbI TGCGCA 1 cut(s) 496
PkrI GCNGC 3 cut(s) 13, 193, 452
PpuMI RGGWCCY 1 cut(s) 323
Psp5II RGGWCCY 1 cut(s) 323
PspFI CCCAGC 1 cut(s) 122
PspN4I GGNNCC 2 cut(s) 282, 324
PspPI GGNCC 2 cut(s) 112, 323
PspPPI RGGWCCY 1 cut(s) 323
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 3 cut(s) 12, 192, 451
Sau3AI GATC 2 cut(s) 28, 73
Sau96I GGNCC 2 cut(s) 112, 323
ScrFI CCNGG 2 cut(s) 58, 373
SetI ASST 4 cut(s) 13, 193, 241, 352
SfaNI GCATC 1 cut(s) 208
SinI GGWCC 2 cut(s) 112, 323
SmlI CTYRAG 3 cut(s) 32, 330, 339
SmoI CTYRAG 3 cut(s) 32, 330, 339
Sse9I AATT 4 cut(s) 24, 253, 292, 432
SsiI CCGC 1 cut(s) 450
SspMI CTAG 1 cut(s) 159
StyD4I CCNGG 2 cut(s) 56, 371
StyI CCWWGG 1 cut(s) 484
TaaI ACNGT 1 cut(s) 270
TasI AATT 4 cut(s) 24, 253, 292, 432
TauI GCSGC 1 cut(s) 453
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 1 cut(s) 275
TseI GCWGC 2 cut(s) 11, 191
TspDTI ATGAA 2 cut(s) 77, 213
TspRI CASTG 1 cut(s) 275
VpaK11BI GGWCC 2 cut(s) 112, 323
XapI RAATTY 1 cut(s) 253
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.