Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001831

Physical Location & Seq

Genomic Coordinates Forward (+)

77851069 .. 77852978

Gene Structure 1910 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53037

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGATTACAACACTGCTTGCAAGGACAAGAAGAAGAAAACCATCGACCAGTCCATGCTGCTCTGCTGCAAGCTCTTCATATCTGAATCGCGTAACCTCGCTGTGCTCGACGCCATTGAACGTGCTGCTAGGCTTGACCCGGAGTCTGTCATTGTTAACAAATTTGAGGACCGAGCTTACAATAGGGTCCGGTATACTATTGTGTCATATGTTCTGCATGACAGCACAGGAAGTGCTATATACAGCCCCTTGCATCAAACTGTACTAGCCATGGCTGAGGCAGCGTTCGGGGCCATTAACCTCGAGCAGCATTCAGGGGCTCACCCTCGCTTAGGGGTTGTCGATGACATTGTGTTCCACCCTTTGGCAAGAGCATCTCTAGATGAAGCAGCTTGGCTTGCTAAGGCTGTGGCAGTGGACATTGGCAATAAATTCCAAGGTTGTTCCAGTATATCTATATGCTGCAGCACACCCTACAGGCAAGGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005790 GO:0005793 GO:0005794 GO:0005829 GO:0005886 GO:0006082 GO:0006520 GO:0006547 GO:0006548 GO:0006725 GO:0006807 GO:0006996 GO:0007010 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009987 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016054 GO:0016740 GO:0016741 GO:0016742 GO:0016829 GO:0016840 GO:0016841 GO:0019439 GO:0019752 GO:0030407 GO:0030409 GO:0030412 GO:0030868 GO:0031090 GO:0031984 GO:0034641 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046483 GO:0046700 GO:0052803 GO:0052805 GO:0071704 GO:0071840 GO:0071944 GO:0097425 GO:0098588 GO:0098791 GO:0098827 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FTCD_N

Protein Analysis

163

Amino Acids

17.91

Weight (kDa)

6.94

Isoelectric Point (pI)

26.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FTCD_N	PF07837	20 - 146	1.6e-35	Formiminotransferase domain, N-terminal subdomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20830 AT2G20830 AT2G20830 AT2G20830 AT2G20830 AT2G20830
fragaria_vesca	FvH4_6g44860 FvH4_6g44860 FvH4_6g44870 FvH4_6g44870 FvH4_6g44870
malus_domestica	MD09G1092400.v1.1 MD09G1092500.v1.1 MD17G1082500.v1.1
prunus_persica	Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232700_v2.0.a1 Prupe.3G232700_v2.0.a1
pyrus_communis	pycom09g01780 pycom09g01790 pycom17g08050 pycom17g08060
rosa_chinensis	RchiOBHm_Chr2g0162051 RchiOBHm_Chr2g0162061
rosa_laevigata	RLG00000021319
rosa_multiflora	Rmu_co8364399.1_g000001 Rmu_sc0005601.1_g000004 Rmu_sc0005601.1_g000005 Rmu_sc0026966.1_g000002
rosa_roxburghii	Rroxscaffold_2G00088340 Rroxscaffold_2G00088350
rosa_rugosa	Rorug02G0494300
rosa_samantha	Rh2AG560400 Rh2AG560500 Rh2BG573700 Rh2BG573800 Rh2CG544000 Rh2CG544100 Rh2DG583700 Rh2DG583800
rosa_wichuraiana	Rw2G046410 Rw2G046420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	364
AccI	GTMKAC	1 cut(s)	194
AccII	CGCG	1 cut(s)	91
AcsI	RAATTY	2 cut(s)	161, 431
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	1 cut(s)	264
AfiI	CCNNNNNNNGG	2 cut(s)	332, 364
AgsI	TTSAA	1 cut(s)	119
AhdI	GACNNNNNGTC	1 cut(s)	142
AluBI	AGCT	3 cut(s)	73, 176, 392
AluI	AGCT	3 cut(s)	73, 176, 392
Alw21I	GWGCWC	1 cut(s)	108
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	1 cut(s)	291
ApeKI	GCWGC	8 cut(s)	58, 66, 125, 281, 307, 389, 462, 465
ApoI	RAATTY	2 cut(s)	161, 431
AspS9I	GGNCC	3 cut(s)	169, 187, 291
AsuC2I	CCSGG	1 cut(s)	140
AsuHPI	GGTGA	1 cut(s)	314
AvaI	CYCGRG	1 cut(s)	302
AvaII	GGWCC	2 cut(s)	169, 187
BanII	GRGCYC	1 cut(s)	322
Bbv12I	GWGCWC	1 cut(s)	108
BbvCI	CCTCAGC	1 cut(s)	276
BbvI	GCAGC	8 cut(s)	45, 53, 112, 293, 319, 401, 449, 477
BccI	CCATC	1 cut(s)	50
BcnI	CCSGG	1 cut(s)	140
BfaI	CTAG	3 cut(s)	129, 266, 380
BfmI	CTRYAG	2 cut(s)	463, 475
BisI	GCNGC	8 cut(s)	59, 67, 126, 282, 308, 390, 463, 466
BlsI	GCNGC	8 cut(s)	60, 68, 127, 283, 309, 391, 464, 467
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	2 cut(s)	169, 187
BmeRI	GACNNNNNGTC	1 cut(s)	142
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	3 cut(s)	169, 187, 291
BmiI	GGNNCC	2 cut(s)	188, 292
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	2 cut(s)	262, 383
Bpu10I	CCTNAGC	3 cut(s)	276, 331, 402
BpuMI	CCSGG	1 cut(s)	140
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	2 cut(s)	270, 436
BsaWI	WCCGGW	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 364
Bse1I	ACTGG	2 cut(s)	49, 447
BseDI	CCNNGG	2 cut(s)	270, 436
BseLI	CCNNNNNNNGG	2 cut(s)	332, 364
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	2 cut(s)	49, 447
BseXI	GCAGC	8 cut(s)	45, 53, 112, 293, 319, 401, 449, 477
Bsh1236I	CGCG	1 cut(s)	91
BshFI	GGCC	1 cut(s)	293
BsiHKAI	GWGCWC	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	2 cut(s)	140, 190
BslI	CCNNNNNNNGG	2 cut(s)	332, 364
BsmI	GAATGC	1 cut(s)	310
BsnI	GGCC	1 cut(s)	293
BsoBI	CYCGRG	1 cut(s)	302
Bsp1286I	GDGCHC	2 cut(s)	108, 322
Bsp19I	CCATGG	1 cut(s)	270
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	1 cut(s)	268
BspFNI	CGCG	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	188, 292
BspMAI	CTGCAG	1 cut(s)	467
BspQI	GCTCTTC	1 cut(s)	80
BsrI	ACTGG	2 cut(s)	49, 447
BssECI	CCNNGG	2 cut(s)	270, 436
BssNAI	GTATAC	1 cut(s)	195
BssNI	GRCGYC	1 cut(s)	111
BssT1I	CCWWGG	2 cut(s)	270, 436
Bst1107I	GTATAC	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	262
Bst6I	CTCTTC	1 cut(s)	80
BstACI	GRCGYC	1 cut(s)	111
BstC8I	GCNNGC	3 cut(s)	19, 71, 399
BstDEI	CTNAG	3 cut(s)	276, 331, 402
BstDSI	CCRYGG	1 cut(s)	270
BstENI	CCTNNNNNAGG	1 cut(s)	330
BstFNI	CGCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	3 cut(s)	281, 290, 398
BstSCI	CCNGG	1 cut(s)	138
BstSFI	CTRYAG	2 cut(s)	463, 475
BstUI	CGCG	1 cut(s)	91
BstV1I	GCAGC	8 cut(s)	45, 53, 112, 293, 319, 401, 449, 477
BstZ17I	GTATAC	1 cut(s)	195
BsuRI	GGCC	1 cut(s)	293
BtgI	CCRYGG	1 cut(s)	270
BtsI	GCAGTG	2 cut(s)	12, 420
BtsIMutI	CAGTG	2 cut(s)	12, 420
Cac8I	GCNNGC	3 cut(s)	19, 71, 399
Cfr13I	GGNCC	3 cut(s)	169, 187, 291
CseI	GACGC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	263
CviAII	CATG	3 cut(s)	55, 218, 271
CviQI	GTAC	1 cut(s)	263
DdeI	CTNAG	3 cut(s)	276, 331, 402
DriI	GACNNNNNGTC	1 cut(s)	142
Eam1104I	CTCTTC	1 cut(s)	80
Eam1105I	GACNNNNNGTC	1 cut(s)	142
EarI	CTCTTC	1 cut(s)	80
Eco130I	CCWWGG	2 cut(s)	270, 436
Eco24I	GRGCYC	1 cut(s)	322
Eco47I	GGWCC	2 cut(s)	169, 187
Eco88I	CYCGRG	1 cut(s)	302
EcoNI	CCTNNNNNAGG	1 cut(s)	330
EcoT14I	CCWWGG	2 cut(s)	270, 436
EcoT38I	GRGCYC	1 cut(s)	322
ErhI	CCWWGG	2 cut(s)	270, 436
FaeI	CATG	3 cut(s)	58, 221, 274
FatI	CATG	3 cut(s)	54, 217, 270
FauNDI	CATATG	1 cut(s)	208
FblI	GTMKAC	1 cut(s)	194
Fnu4HI	GCNGC	8 cut(s)	59, 67, 126, 282, 308, 390, 463, 466
FriOI	GRGCYC	1 cut(s)	322
Fsp4HI	GCNGC	8 cut(s)	59, 67, 126, 282, 308, 390, 463, 466
FspBI	CTAG	3 cut(s)	129, 266, 380
GluI	GCNGC	8 cut(s)	59, 67, 126, 282, 308, 390, 463, 466
HaeIII	GGCC	1 cut(s)	293
HapII	CCGG	2 cut(s)	140, 190
HgaI	GACGC	1 cut(s)	119
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	3 cut(s)	58, 221, 274
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	2 cut(s)	86, 143
HpaI	GTTAAC	1 cut(s)	157
HpaII	CCGG	2 cut(s)	140, 190
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	3 cut(s)	157, 195, 418
Hpy188I	TCNGA	1 cut(s)	85
Hpy188III	TCNNGA	2 cut(s)	380, 489
Hpy8I	GTNNAC	3 cut(s)	157, 195, 418
Hpy99I	CGWCG	1 cut(s)	113
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	5 cut(s)	21, 69, 217, 253, 465
HpyF10VI	GCNNNNNNNGC	3 cut(s)	281, 290, 398
HpyF3I	CTNAG	3 cut(s)	276, 331, 402
HpySE526I	ACGT	1 cut(s)	121
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	3 cut(s)	58, 221, 274
KspAI	GTTAAC	1 cut(s)	157
LguI	GCTCTTC	1 cut(s)	80
LpnPI	CCDG	7 cut(s)	62, 153, 203, 213, 300, 460, 463
Lsp1109I	GCAGC	8 cut(s)	45, 53, 112, 293, 319, 401, 449, 477
LweI	GCATC	2 cut(s)	262, 383
MaeI	CTAG	3 cut(s)	129, 266, 380
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	1 cut(s)	92
MboII	GAAGA	3 cut(s)	43, 46, 67
MhlI	GDGCHC	2 cut(s)	108, 322
MluCI	AATT	2 cut(s)	161, 431
MlyI	GAGTC	1 cut(s)	152
MnlI	CCTC	5 cut(s)	107, 160, 271, 311, 336
MseI	TTAA	2 cut(s)	156, 297
MspI	CCGG	2 cut(s)	140, 190
MspR9I	CCNGG	1 cut(s)	140
Mva1269I	GAATGC	1 cut(s)	310
MvnI	CGCG	1 cut(s)	91
MwoI	GCNNNNNNNGC	3 cut(s)	281, 290, 398
NciI	CCSGG	1 cut(s)	140
NcoI	CCATGG	1 cut(s)	270
NdeI	CATATG	1 cut(s)	208
NlaIII	CATG	3 cut(s)	58, 221, 274
NlaIV	GGNNCC	2 cut(s)	188, 292
PaeR7I	CTCGAG	1 cut(s)	302
PciSI	GCTCTTC	1 cut(s)	80
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PctI	GAATGC	1 cut(s)	310
PfeI	GAWTC	1 cut(s)	86
PflMI	CCANNNNNTGG	1 cut(s)	364
PkrI	GCNGC	8 cut(s)	60, 68, 127, 283, 309, 391, 464, 467
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PspN4I	GGNNCC	2 cut(s)	188, 292
PspPI	GGNCC	3 cut(s)	169, 187, 291
PspXI	VCTCGAGB	1 cut(s)	302
PstI	CTGCAG	1 cut(s)	467
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
SapI	GCTCTTC	1 cut(s)	80
SaqAI	TTAA	2 cut(s)	156, 297
SatI	GCNGC	8 cut(s)	59, 67, 126, 282, 308, 390, 463, 466
Sau96I	GGNCC	3 cut(s)	169, 187, 291
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	140
SduI	GDGCHC	2 cut(s)	108, 322
SetI	ASST	7 cut(s)	75, 99, 124, 178, 303, 394, 442
SfaNI	GCATC	2 cut(s)	262, 383
SfcI	CTRYAG	2 cut(s)	463, 475
Sfr274I	CTCGAG	1 cut(s)	302
SinI	GGWCC	2 cut(s)	169, 187
SlaI	CTCGAG	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	2 cut(s)	161, 431
SspMI	CTAG	3 cut(s)	129, 266, 380
StyD4I	CCNGG	1 cut(s)	138
StyI	CCWWGG	2 cut(s)	270, 436
TaaI	ACNGT	1 cut(s)	262
TaiI	ACGT	1 cut(s)	124
TaqI	TCGA	4 cut(s)	45, 108, 303, 342
TaqII	GACCGA	1 cut(s)	186
TasI	AATT	2 cut(s)	161, 431
TatI	WGTACW	1 cut(s)	262
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	2 cut(s)	156, 297
Tru9I	TTAA	2 cut(s)	156, 297
TscAI	CASTG	2 cut(s)	19, 420
TseI	GCWGC	8 cut(s)	58, 66, 125, 281, 307, 389, 462, 465
TspDTI	ATGAA	2 cut(s)	67, 399
TspRI	CASTG	2 cut(s)	19, 420
Van91I	CCANNNNNTGG	1 cut(s)	364
VpaK11BI	GGWCC	2 cut(s)	169, 187
XagI	CCTNNNNNAGG	1 cut(s)	330
XapI	RAATTY	2 cut(s)	161, 431
XbaI	TCTAGA	1 cut(s)	379
XhoI	CTCGAG	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	194
XspI	CTAG	3 cut(s)	129, 266, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.