Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001831

Physical Location & Seq

Genomic Coordinates Reverse (-)

6783711 .. 6785858

Gene Structure 2148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1092400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGATTTCAGCCAAGGATGCAAGGACAAGAAGAAGAAAACAATAGACCAGTCCATGCTACTCTGCTGCAAGCTTTACATATCCGAATCACGAAACCTCGCTGCCCTCGACACCATTGAGCGTGCCGCTAGGCTCGACCCGGAGTCAGTCATAGTTAACAAATTTGAAGACCGAGAATACAATAGGGTCCGGTACACTATTGTGTCATATGTCATGCATGATAGCACAGGAAGTGCCATATACAGCCCCTTGCAGCAAACTGTCATGGCCATGACTGAGGCAGCCTTTGGAGCCATCAACCTTGAGCAGCACTCGGGCGCTCACCCTCGGTTGGGGGTTGTCGATGACATTGTCTTCCACCCGTTGGCTCGGGCATCTCTGGATGAAGCTGCTTGGCTTGCTAAGGCAGTGGCCGTCGATATTGGTAATAGATTCCAAGTGCCAGTGTACTTGTATGCAGCGGCACACCCTACAGGCAAGGCCCTAGACACGATCAGGCGTGAGCTGGGCTACTACAGGCCAAATTTCATGCCAGATGCTCTCCAAGAAAAGCCCGACGAAGGCCCAACTTGCGTATCTCCGGCCAGAGGTATCACAATGATCGGGGCACGTCAGTGGGTTGGCTTGTACAACATTCCCATAATGTCCACGGATGTCGCGGCCACTAAACGGATTGCACGGATGGTGAGTGCCCGAGGGGGCGGACTCCCAACCGTGCAAACACTAGGATTATTGCACGGTGAGGACTCGACGGAGATAGCTTGCATGCTCTTAGATCCCAACCAAGTCGGAGCGGACCACGTCCAAAACTACGTCGAGATGCTTGCGGCACAAGAAGGGTTGGACGTGGAGAAGGGGTACTTCACTGATTACTCACCAGATATGATTACTGAAAAATACATGAAACTAATTTCATCTGCAGAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005790 GO:0005793 GO:0005794 GO:0005829 GO:0005886 GO:0006082 GO:0006520 GO:0006547 GO:0006548 GO:0006725 GO:0006807 GO:0006996 GO:0007010 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009987 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016054 GO:0016740 GO:0016741 GO:0016742 GO:0016829 GO:0016840 GO:0016841 GO:0019439 GO:0019752 GO:0030407 GO:0030409 GO:0030412 GO:0030868 GO:0031090 GO:0031984 GO:0034641 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046483 GO:0046700 GO:0052803 GO:0052805 GO:0071704 GO:0071840 GO:0071944 GO:0097425 GO:0098588 GO:0098791 GO:0098827 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FTCD_N

Protein Analysis

310

Amino Acids

34.16

Weight (kDa)

5.43

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FTCD_N	PF07837	20 - 204	2.7e-52	Formiminotransferase domain, N-terminal subdomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20830 AT2G20830 AT2G20830 AT2G20830 AT2G20830 AT2G20830
fragaria_vesca	FvH4_6g44860 FvH4_6g44860 FvH4_6g44870 FvH4_6g44870 FvH4_6g44870
malus_domestica	MD09G1092400.v1.1 MD09G1092500.v1.1 MD17G1082500.v1.1
prunus_persica	Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232700_v2.0.a1 Prupe.3G232700_v2.0.a1
pyrus_communis	pycom09g01780 pycom09g01790 pycom17g08050 pycom17g08060
rosa_chinensis	RchiOBHm_Chr2g0162051 RchiOBHm_Chr2g0162061
rosa_laevigata	RLG00000021319
rosa_multiflora	Rmu_co8364399.1_g000001 Rmu_sc0005601.1_g000004 Rmu_sc0005601.1_g000005 Rmu_sc0026966.1_g000002
rosa_roxburghii	Rroxscaffold_2G00088340 Rroxscaffold_2G00088350
rosa_rugosa	Rorug02G0494300
rosa_samantha	Rh2AG560400 Rh2AG560500 Rh2BG573700 Rh2BG573800 Rh2CG544000 Rh2CG544100 Rh2DG583700 Rh2DG583800
rosa_wichuraiana	Rw2G046410 Rw2G046420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	364
AccBSI	CCGCTC	1 cut(s)	794
AccII	CGCG	1 cut(s)	659
AciI	CCGC	6 cut(s)	126, 461, 659, 702, 794, 827
AclWI	GGATC	1 cut(s)	770
AcoI	YGGCCR	4 cut(s)	267, 411, 582, 660
AcsI	RAATTY	2 cut(s)	161, 523
AfaI	GTAC	4 cut(s)	194, 449, 629, 860
AfiI	CCNNNNNNNGG	6 cut(s)	331, 332, 364, 560, 587, 669
AgsI	TTSAA	1 cut(s)	167
AhdI	GACNNNNNGTC	1 cut(s)	142
AjiI	CACGTC	3 cut(s)	611, 802, 847
AleI	CACNNNNGTG	2 cut(s)	200, 613
AluBI	AGCT	4 cut(s)	73, 389, 505, 761
AluI	AGCT	4 cut(s)	73, 389, 505, 761
AlwI	GGATC	1 cut(s)	770
Ama87I	CYCGRG	3 cut(s)	313, 369, 693
AoxI	GGCC	7 cut(s)	267, 411, 480, 518, 562, 582, 660
ApeKI	GCWGC	7 cut(s)	66, 101, 253, 281, 307, 389, 458
ApoI	RAATTY	2 cut(s)	161, 523
AspLEI	GCGC	1 cut(s)	320
AspS9I	GGNCC	4 cut(s)	187, 481, 563, 796
AsuC2I	CCSGG	1 cut(s)	140
AsuHPI	GGTGA	4 cut(s)	314, 697, 752, 867
AvaI	CYCGRG	3 cut(s)	313, 369, 693
AvaII	GGWCC	2 cut(s)	187, 796
BaeGI	GKGCMC	2 cut(s)	610, 694
BaeI	ACNNNNGTAYC	2 cut(s)	558, 591
BalI	TGGCCA	1 cut(s)	269
BbsI	GAAGAC	2 cut(s)	174, 346
BbvI	GCAGC	7 cut(s)	53, 88, 265, 293, 319, 376, 470
BccI	CCATC	2 cut(s)	302, 676
BceAI	ACGGC	1 cut(s)	398
BcgI	CGANNNNNNTGC	2 cut(s)	806, 840
BcnI	CCSGG	1 cut(s)	140
BfaI	CTAG	3 cut(s)	129, 485, 725
BfmI	CTRYAG	3 cut(s)	471, 514, 918
BfoI	RGCGCY	1 cut(s)	321
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	2 cut(s)	187, 796
BmeRI	GACNNNNNGTC	1 cut(s)	142
BmeT110I	CYCGRG	3 cut(s)	313, 369, 693
BmgBI	CACGTC	3 cut(s)	611, 802, 847
BmgT120I	GGNCC	4 cut(s)	187, 481, 563, 796
BmiI	GGNNCC	2 cut(s)	188, 292
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	4 cut(s)	8, 383, 526, 810
BpiI	GAAGAC	2 cut(s)	174, 346
BplI	GAGNNNNNCTC	2 cut(s)	296, 328
Bpu10I	CCTNAGC	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	323
BpuMI	CCSGG	1 cut(s)	140
BsaJI	CCNNGG	4 cut(s)	13, 326, 648, 694
BsaWI	WCCGGW	1 cut(s)	189
BsaXI	ACNNNNNCTCC	2 cut(s)	842, 872
Bsc4I	CCNNNNNNNGG	6 cut(s)	331, 332, 364, 560, 587, 669
Bse1I	ACTGG	2 cut(s)	49, 443
BseDI	CCNNGG	4 cut(s)	13, 326, 648, 694
BseGI	GGATG	4 cut(s)	23, 388, 658, 687
BseLI	CCNNNNNNNGG	6 cut(s)	331, 332, 364, 560, 587, 669
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	2 cut(s)	49, 443
BseSI	GKGCMC	2 cut(s)	610, 694
BseXI	GCAGC	7 cut(s)	53, 88, 265, 293, 319, 376, 470
BseYI	CCCAGC	1 cut(s)	505
Bsh1236I	CGCG	1 cut(s)	659
BshFI	GGCC	7 cut(s)	269, 413, 482, 520, 564, 584, 662
BsiHKCI	CYCGRG	3 cut(s)	313, 369, 693
BsiSI	CCGG	3 cut(s)	140, 190, 581
BslI	CCNNNNNNNGG	6 cut(s)	331, 332, 364, 560, 587, 669
BsnI	GGCC	7 cut(s)	269, 413, 482, 520, 564, 584, 662
BsoBI	CYCGRG	3 cut(s)	313, 369, 693
Bsp1286I	GDGCHC	2 cut(s)	610, 694
Bsp1407I	TGTACA	1 cut(s)	627
Bsp143I	GATC	3 cut(s)	492, 600, 775
BspACI	CCGC	6 cut(s)	126, 461, 659, 702, 794, 827
BspANI	GGCC	7 cut(s)	269, 413, 482, 520, 564, 584, 662
BspCNI	CTCAG	1 cut(s)	268
BspFNI	CGCG	1 cut(s)	659
BspLI	GGNNCC	2 cut(s)	188, 292
BspMAI	CTGCAG	1 cut(s)	922
BspPI	GGATC	1 cut(s)	770
BsrBI	CCGCTC	1 cut(s)	794
BsrGI	TGTACA	1 cut(s)	627
BsrI	ACTGG	2 cut(s)	49, 443
BssECI	CCNNGG	4 cut(s)	13, 326, 648, 694
BssMI	GATC	3 cut(s)	492, 600, 775
BssT1I	CCWWGG	1 cut(s)	13
Bst4CI	ACNGT	3 cut(s)	262, 715, 740
BstAUI	TGTACA	1 cut(s)	627
BstC8I	GCNNGC	6 cut(s)	71, 123, 399, 763, 767, 825
BstDEI	CTNAG	3 cut(s)	276, 402, 772
BstDSI	CCRYGG	1 cut(s)	648
BstF5I	GGATG	4 cut(s)	23, 388, 658, 687
BstFNI	CGCG	1 cut(s)	659
BstH2I	RGCGCY	1 cut(s)	321
BstHHI	GCGC	1 cut(s)	320
BstKTI	GATC	3 cut(s)	495, 603, 778
BstMBI	GATC	3 cut(s)	492, 600, 775
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 290, 398, 570
BstNSI	RCATGY	1 cut(s)	769
BstSCI	CCNGG	1 cut(s)	138
BstSFI	CTRYAG	3 cut(s)	471, 514, 918
BstSLI	GKGCMC	2 cut(s)	610, 694
BstUI	CGCG	1 cut(s)	659
BstV1I	GCAGC	7 cut(s)	53, 88, 265, 293, 319, 376, 470
BstV2I	GAAGAC	2 cut(s)	174, 346
BstX2I	RGATCY	1 cut(s)	775
BstYI	RGATCY	1 cut(s)	775
BsuRI	GGCC	7 cut(s)	269, 413, 482, 520, 564, 584, 662
BtgI	CCRYGG	1 cut(s)	648
BtrI	CACGTC	3 cut(s)	611, 802, 847
BtsCI	GGATG	4 cut(s)	23, 388, 658, 687
BtsI	GCAGTG	1 cut(s)	414
BtsIMutI	CAGTG	4 cut(s)	414, 450, 620, 864
Cac8I	GCNNGC	6 cut(s)	71, 123, 399, 763, 767, 825
CfoI	GCGC	1 cut(s)	320
Cfr13I	GGNCC	4 cut(s)	187, 481, 563, 796
Csp6I	GTAC	4 cut(s)	193, 448, 628, 859
CviAII	CATG	8 cut(s)	55, 214, 218, 265, 271, 529, 766, 901
CviQI	GTAC	4 cut(s)	193, 448, 628, 859
DdeI	CTNAG	3 cut(s)	276, 402, 772
DpnI	GATC	3 cut(s)	494, 602, 777
DpnII	GATC	3 cut(s)	492, 600, 775
DriI	GACNNNNNGTC	1 cut(s)	142
EaeI	YGGCCR	4 cut(s)	267, 411, 582, 660
Eam1105I	GACNNNNNGTC	1 cut(s)	142
EciI	GGCGGA	1 cut(s)	717
Eco130I	CCWWGG	1 cut(s)	13
Eco47I	GGWCC	2 cut(s)	187, 796
Eco88I	CYCGRG	3 cut(s)	313, 369, 693
EcoO109I	RGGNCCY	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	13
EcoT22I	ATGCAT	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	13
FaeI	CATG	8 cut(s)	58, 217, 221, 268, 274, 532, 769, 904
FalI	AAGNNNNNCTT	2 cut(s)	845, 877
FatI	CATG	8 cut(s)	54, 213, 217, 264, 270, 528, 765, 900
FauNDI	CATATG	1 cut(s)	208
FokI	GGATG	4 cut(s)	30, 395, 665, 694
FspBI	CTAG	3 cut(s)	129, 485, 725
GlaI	GCGC	1 cut(s)	319
GsaI	CCCAGC	1 cut(s)	509
HaeII	RGCGCY	1 cut(s)	321
HaeIII	GGCC	7 cut(s)	269, 413, 482, 520, 564, 584, 662
HapII	CCGG	3 cut(s)	140, 190, 581
HhaI	GCGC	1 cut(s)	320
Hin1II	CATG	8 cut(s)	58, 217, 221, 268, 274, 532, 769, 904
Hin6I	GCGC	1 cut(s)	318
HinP1I	GCGC	1 cut(s)	318
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	5 cut(s)	86, 143, 432, 705, 746
HpaI	GTTAAC	1 cut(s)	157
HpaII	CCGG	3 cut(s)	140, 190, 581
HphI	GGTGA	4 cut(s)	314, 697, 752, 867
Hpy166II	GTNNAC	4 cut(s)	157, 195, 448, 648
Hpy188I	TCNGA	2 cut(s)	85, 791
Hpy188III	TCNNGA	3 cut(s)	90, 380, 817
Hpy8I	GTNNAC	4 cut(s)	157, 195, 448, 648
Hpy99I	CGWCG	4 cut(s)	419, 560, 754, 818
HpyAV	CCTTC	3 cut(s)	554, 830, 847
HpyCH4III	ACNGT	3 cut(s)	262, 715, 740
HpyCH4IV	ACGT	4 cut(s)	610, 801, 813, 846
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 290, 398, 570
HpyF3I	CTNAG	3 cut(s)	276, 402, 772
HpySE526I	ACGT	4 cut(s)	610, 801, 813, 846
Hsp92II	CATG	8 cut(s)	58, 217, 221, 268, 274, 532, 769, 904
HspAI	GCGC	1 cut(s)	318
KspAI	GTTAAC	1 cut(s)	157
Kzo9I	GATC	3 cut(s)	492, 600, 775
LmnI	GCTCC	2 cut(s)	290, 791
Lsp1109I	GCAGC	7 cut(s)	53, 88, 265, 293, 319, 376, 470
LweI	GCATC	4 cut(s)	8, 383, 526, 810
MaeI	CTAG	3 cut(s)	129, 485, 725
MaeII	ACGT	4 cut(s)	610, 801, 813, 846
MalI	GATC	3 cut(s)	494, 602, 777
MbiI	CCGCTC	1 cut(s)	794
MboI	GATC	3 cut(s)	492, 600, 775
MboII	GAAGA	4 cut(s)	43, 46, 179, 346
MflI	RGATCY	1 cut(s)	775
MhlI	GDGCHC	2 cut(s)	610, 694
MlsI	TGGCCA	1 cut(s)	269
MluCI	AATT	3 cut(s)	161, 523, 909
MluNI	TGGCCA	1 cut(s)	269
MlyI	GAGTC	3 cut(s)	152, 699, 740
MmeI	TCCRAC	2 cut(s)	769, 822
MnlI	CCTC	7 cut(s)	107, 116, 271, 336, 581, 689, 736
Mox20I	TGGCCA	1 cut(s)	269
Mph1103I	ATGCAT	1 cut(s)	219
MscI	TGGCCA	1 cut(s)	269
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	3 cut(s)	200, 269, 613
Msp20I	TGGCCA	1 cut(s)	269
MspA1I	CMGCKG	1 cut(s)	461
MspI	CCGG	3 cut(s)	140, 190, 581
MspR9I	CCNGG	1 cut(s)	140
MvnI	CGCG	1 cut(s)	659
MwoI	GCNNNNNNNGC	4 cut(s)	18, 290, 398, 570
NciI	CCSGG	1 cut(s)	140
NdeI	CATATG	1 cut(s)	208
NdeII	GATC	3 cut(s)	492, 600, 775
NlaIII	CATG	8 cut(s)	58, 217, 221, 268, 274, 532, 769, 904
NlaIV	GGNNCC	2 cut(s)	188, 292
NsiI	ATGCAT	1 cut(s)	219
NspI	RCATGY	1 cut(s)	769
OliI	CACNNNNGTG	2 cut(s)	200, 613
PaeI	GCATGC	1 cut(s)	769
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PfeI	GAWTC	2 cut(s)	86, 432
PflFI	GACNNNGTC	2 cut(s)	350, 800
PflMI	CCANNNNNTGG	1 cut(s)	364
PleI	GAGTC	3 cut(s)	151, 699, 740
PpsI	GAGTC	3 cut(s)	151, 699, 740
PspFI	CCCAGC	1 cut(s)	505
PspN4I	GGNNCC	2 cut(s)	188, 292
PspPI	GGNCC	4 cut(s)	187, 481, 563, 796
PstI	CTGCAG	1 cut(s)	922
PsuI	RGATCY	1 cut(s)	775
PsyI	GACNNNGTC	2 cut(s)	350, 800
RsaI	GTAC	4 cut(s)	194, 449, 629, 860
RsaNI	GTAC	4 cut(s)	193, 448, 628, 859
RseI	CAYNNNNRTG	3 cut(s)	200, 269, 613
SaqAI	TTAA	1 cut(s)	156
Sau3AI	GATC	3 cut(s)	492, 600, 775
Sau96I	GGNCC	4 cut(s)	187, 481, 563, 796
SchI	GAGTC	3 cut(s)	152, 699, 740
ScrFI	CCNGG	1 cut(s)	140
SduI	GDGCHC	2 cut(s)	610, 694
SfaNI	GCATC	4 cut(s)	8, 383, 526, 810
SfcI	CTRYAG	3 cut(s)	471, 514, 918
SinI	GGWCC	2 cut(s)	187, 796
SmiMI	CAYNNNNRTG	3 cut(s)	200, 269, 613
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
SphI	GCATGC	1 cut(s)	769
Sse9I	AATT	3 cut(s)	161, 523, 909
SsiI	CCGC	6 cut(s)	126, 461, 659, 702, 794, 827
SspMI	CTAG	3 cut(s)	129, 485, 725
StyD4I	CCNGG	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	13
TaaI	ACNGT	3 cut(s)	262, 715, 740
TaiI	ACGT	4 cut(s)	613, 804, 816, 849
TaqI	TCGA	6 cut(s)	108, 135, 342, 417, 749, 816
TaqII	GACCGA	1 cut(s)	186
TasI	AATT	3 cut(s)	161, 523, 909
TatI	WGTACW	2 cut(s)	447, 627
TauI	GCSGC	4 cut(s)	128, 464, 662, 830
TfiI	GAWTC	2 cut(s)	86, 432
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	4 cut(s)	414, 450, 620, 871
TseI	GCWGC	7 cut(s)	66, 101, 253, 281, 307, 389, 458
TspDTI	ATGAA	4 cut(s)	399, 517, 903, 917
TspGWI	ACGGA	4 cut(s)	665, 685, 694, 767
TspRI	CASTG	4 cut(s)	414, 450, 620, 871
Tth111I	GACNNNGTC	2 cut(s)	350, 800
Van91I	CCANNNNNTGG	1 cut(s)	364
VpaK11BI	GGWCC	2 cut(s)	187, 796
XapI	RAATTY	2 cut(s)	161, 523
XceI	RCATGY	1 cut(s)	769
XspI	CTAG	3 cut(s)	129, 485, 725
Zsp2I	ATGCAT	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.