pycom17g08060

Formiminotransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0001831
Physical Location & Seq
Reverse (-)
6040069 .. 6040725
657 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g08060.1

Sequence Viewer

Length: 519 bp
ATGTTGAAGGCTATGCTTGGTTGCTGCAAGGTTTACATATCCGAGAGCAGAAACAGGGCAGCGCTGGACTTGATTGAATGGACTGCTAAGCTGTTCTCGGAAGCACGGATTGTGAATAAGTTTGAAGATGAGACTTACAACAGAGTTGGTTACACACTTGTCTCTAAGTTGGCTCCAAAGCCGTCTGCGGATCGTTGTCCTTTGAGGATGGCAGTGCTTGCCATGGTTAAAGCTGCTTTTGAAACACTTGATGTCGAGTCGCATTGTGGAAGTCATCCCCGGCTCGGAGTTGTGGATCATATATGCTTTCATCCCCTGCTTGGTGCTTCTTTGGACCAAGTTGCTGGGGTTGCAAACTCTTTGGTTGAAGATGTTGGCTCTAGTTTTCAAGTCCCTACTTTTCTGTATGGAGCTGCCCATGAAGAGGGAAGAACACTTGATTCAGTCTGGAGAGAGTTAGGTTATTTCAAGCCGAATTCTAGCGGAGAACAGTGGGTTGGGGGACCGAAATCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FTCD_N Yae1_N

Protein Analysis

173

Amino Acids

18.89

Weight (kDa)

6.2

Isoelectric Point (pI)

23.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FTCD_N PF07837 8 - 161 4.8e-42 Formiminotransferase domain, N-terminal subdomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 188, 483
AclWI GGATC 2 cut(s) 198, 303
AcsI RAATTY 1 cut(s) 475
AfeI AGCGCT 1 cut(s) 63
AfiI CCNNNNNNNGG 3 cut(s) 284, 320, 424
AgsI TTSAA 7 cut(s) 7, 77, 125, 242, 368, 389, 469
AjuI GAANNNNNNNTTGG 2 cut(s) 480, 512
AluBI AGCT 3 cut(s) 91, 233, 413
AluI AGCT 3 cut(s) 91, 233, 413
Alw26I GTCTC 2 cut(s) 125, 166
AlwI GGATC 2 cut(s) 198, 303
Aor51HI AGCGCT 1 cut(s) 63
ApeKI GCWGC 4 cut(s) 24, 59, 233, 413
ApoI RAATTY 1 cut(s) 475
AspLEI GCGC 1 cut(s) 64
AspS9I GGNCC 2 cut(s) 334, 503
AsuC2I CCSGG 1 cut(s) 280
AvaII GGWCC 2 cut(s) 334, 503
BbvI GCAGC 4 cut(s) 11, 71, 220, 400
BccI CCATC 1 cut(s) 202
BceAI ACGGC 1 cut(s) 166
BcnI CCSGG 1 cut(s) 280
BcoDI GTCTC 2 cut(s) 125, 166
BfaI CTAG 2 cut(s) 381, 480
BfoI RGCGCY 1 cut(s) 65
BisI GCNGC 4 cut(s) 25, 60, 234, 414
BlpI GCTNAGC 1 cut(s) 87
BlsI GCNGC 4 cut(s) 26, 61, 235, 415
Bme1390I CCNGG 1 cut(s) 280
Bme18I GGWCC 2 cut(s) 334, 503
BmgT120I GGNCC 2 cut(s) 334, 503
BmiI GGNNCC 2 cut(s) 174, 504
BmrFI CCNGG 1 cut(s) 280
BpmI CTGGAG 1 cut(s) 469
Bpu1102I GCTNAGC 1 cut(s) 87
BpuMI CCSGG 1 cut(s) 280
BsaJI CCNNGG 2 cut(s) 222, 278
Bsc4I CCNNNNNNNGG 3 cut(s) 284, 320, 424
BseDI CCNNGG 2 cut(s) 222, 278
BseGI GGATG 3 cut(s) 213, 274, 310
BseLI CCNNNNNNNGG 3 cut(s) 284, 320, 424
BseXI GCAGC 4 cut(s) 11, 71, 220, 400
BseYI CCCAGC 1 cut(s) 344
BsiSI CCGG 1 cut(s) 280
BslFI GGGAC 1 cut(s) 377
BslI CCNNNNNNNGG 3 cut(s) 284, 320, 424
BsmAI GTCTC 2 cut(s) 125, 166
BsmFI GGGAC 1 cut(s) 377
Bsp143I GATC 2 cut(s) 190, 295
Bsp1720I GCTNAGC 1 cut(s) 87
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 2 cut(s) 188, 483
BspLI GGNNCC 2 cut(s) 174, 504
BspPI GGATC 2 cut(s) 198, 303
BssECI CCNNGG 2 cut(s) 222, 278
BssMI GATC 2 cut(s) 190, 295
BssT1I CCWWGG 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 492
Bst6I CTCTTC 1 cut(s) 417
BstAPI GCANNNNNTGC 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 2 cut(s) 87, 165
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 3 cut(s) 213, 274, 310
BstH2I RGCGCY 1 cut(s) 65
BstHHI GCGC 1 cut(s) 64
BstKTI GATC 2 cut(s) 193, 298
BstMAI GTCTC 2 cut(s) 125, 166
BstMBI GATC 2 cut(s) 190, 295
BstMWI GCNNNNNNNGC 2 cut(s) 218, 350
BstSCI CCNGG 1 cut(s) 278
BstV1I GCAGC 4 cut(s) 11, 71, 220, 400
BstXI CCANNNNNNTGG 1 cut(s) 344
BtgI CCRYGG 1 cut(s) 222
BtsCI GGATG 3 cut(s) 213, 274, 310
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 2 cut(s) 219, 497
Cac8I GCNNGC 1 cut(s) 219
CfoI GCGC 1 cut(s) 64
Cfr13I GGNCC 2 cut(s) 334, 503
CviAII CATG 2 cut(s) 223, 419
CviJI RGCY 9 cut(s) 11, 91, 173, 181, 233, 283, 378, 413, 472
CviKI_1 RGCY 9 cut(s) 11, 91, 173, 181, 233, 283, 378, 413, 472
DdeI CTNAG 2 cut(s) 87, 165
DpnI GATC 2 cut(s) 192, 297
DpnII GATC 2 cut(s) 190, 295
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
Eco130I CCWWGG 1 cut(s) 222
Eco47I GGWCC 2 cut(s) 334, 503
Eco47III AGCGCT 1 cut(s) 63
EcoRI GAATTC 1 cut(s) 475
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 2 cut(s) 226, 422
FaiI YATR 8 cut(s) 14, 38, 224, 300, 302, 304, 408, 420
FaqI GGGAC 1 cut(s) 377
FatI CATG 2 cut(s) 222, 418
Fnu4HI GCNGC 4 cut(s) 25, 60, 234, 414
FokI GGATG 3 cut(s) 220, 261, 297
Fsp4HI GCNGC 4 cut(s) 25, 60, 234, 414
FspBI CTAG 2 cut(s) 381, 480
GlaI GCGC 1 cut(s) 63
GluI GCNGC 4 cut(s) 25, 60, 234, 414
GsaI CCCAGC 1 cut(s) 348
GsuI CTGGAG 1 cut(s) 469
HaeII RGCGCY 1 cut(s) 65
HapII CCGG 1 cut(s) 280
HhaI GCGC 1 cut(s) 64
Hin1II CATG 2 cut(s) 226, 422
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HinfI GANTC 2 cut(s) 257, 440
HpaII CCGG 1 cut(s) 280
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 3 cut(s) 43, 100, 287
Hpy188III TCNNGA 1 cut(s) 448
Hpy8I GTNNAC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 492
HpyCH4V TGCA 2 cut(s) 27, 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 350
HpyF3I CTNAG 2 cut(s) 87, 165
Hsp92II CATG 2 cut(s) 226, 422
HspAI GCGC 1 cut(s) 62
Kzo9I GATC 2 cut(s) 190, 295
LmnI GCTCC 2 cut(s) 178, 410
LpnPI CCDG 6 cut(s) 40, 50, 293, 329, 330, 433
Lsp1109I GCAGC 4 cut(s) 11, 71, 220, 400
MaeI CTAG 2 cut(s) 381, 480
MaeIII GTNAC 1 cut(s) 149
MalI GATC 2 cut(s) 192, 297
MboI GATC 2 cut(s) 190, 295
MboII GAAGA 4 cut(s) 137, 380, 434, 441
MluCI AATT 2 cut(s) 475, 514
MlyI GAGTC 1 cut(s) 266
MnlI CCTC 2 cut(s) 198, 418
MseI TTAA 2 cut(s) 228, 517
MspI CCGG 1 cut(s) 280
MspR9I CCNGG 1 cut(s) 280
MwoI GCNNNNNNNGC 2 cut(s) 218, 350
NciI CCSGG 1 cut(s) 280
NcoI CCATGG 1 cut(s) 222
NdeII GATC 2 cut(s) 190, 295
NlaIII CATG 2 cut(s) 226, 422
NlaIV GGNNCC 2 cut(s) 174, 504
PfeI GAWTC 1 cut(s) 440
PkrI GCNGC 4 cut(s) 26, 61, 235, 415
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
PspFI CCCAGC 1 cut(s) 344
PspN4I GGNNCC 2 cut(s) 174, 504
PspPI GGNCC 2 cut(s) 334, 503
SaqAI TTAA 2 cut(s) 228, 517
SatI GCNGC 4 cut(s) 25, 60, 234, 414
Sau3AI GATC 2 cut(s) 190, 295
Sau96I GGNCC 2 cut(s) 334, 503
SchI GAGTC 1 cut(s) 266
ScrFI CCNGG 1 cut(s) 280
SetI ASST 5 cut(s) 33, 93, 235, 415, 463
SinI GGWCC 2 cut(s) 334, 503
Sse9I AATT 2 cut(s) 475, 514
SsiI CCGC 2 cut(s) 188, 483
SspMI CTAG 2 cut(s) 381, 480
StyD4I CCNGG 1 cut(s) 278
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 492
TaqI TCGA 1 cut(s) 255
TasI AATT 2 cut(s) 475, 514
TfiI GAWTC 1 cut(s) 440
Tru1I TTAA 2 cut(s) 228, 517
Tru9I TTAA 2 cut(s) 228, 517
TscAI CASTG 2 cut(s) 219, 497
TseI GCWGC 4 cut(s) 24, 59, 233, 413
TspDTI ATGAA 2 cut(s) 299, 435
TspGWI ACGGA 1 cut(s) 121
TspRI CASTG 2 cut(s) 219, 497
VpaK11BI GGWCC 2 cut(s) 334, 503
XapI RAATTY 1 cut(s) 475
XspI CTAG 2 cut(s) 381, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.