Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001831

Physical Location & Seq

Genomic Coordinates Forward (+)

22906158 .. 22908929

Gene Structure 2772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G232600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGAAGACATATTAGAACCAGCTGTGAATCTCGTTGAGAACCTACATAAAAAAGGCTTCGATGAAGGCTACGGAGACGGCCTAGTCGCCGGAAAAGAGGAGGCAAAGGAAGTGGGCCTCAAGCACGGCTTTGAGGTGGGCGAGGAGCTCGGCTTCTACCGGGGCTGCGTGGACGTGTGGAACTCTGCAATCCGGGTCGACCCGACACCGTTCTCGCTTCGGGTCCAGAAGGGTGTGAAGCAGATGGAGGAGTTGATTGAGAAATACCCAGTTATGGAACCCGAGGACGAGAGCGTTCAAGATGTAATGGAGGCTCTGAGGTTGAAGTTCAGGGCGATTTGTGCTTCAATGGCTACTGATAAGCAGGGAGGAGAGAAAATGTTGAAGTCGATGCTTGGTTGCTGCAAGGTGTACATTTCTGAAAGCAGAAACAGGGCTGCGCTGGAGGCCATTGAGCGAGCTGCTAAGCTTTTCTCAGAAGCACCCATTGTCAATAAGTTTGAAGATGAGACTTACAACAGAGTTGGTTACACTCTTGTCTCCAAGTTGGCTCCAAAGCCATCTGAGGATCCTTGTCCCTTGAGGATGGCAGTGCTTGCCATGGTTAAGGCTGCTTTTGAAACCATCGACCTTGAGATGCATTGTGGAAGTCATCCCCGGCTCGGAGTTGTGGATCATATATGCTTTCACCCCCTGCTTGGTGCTTCTTTGGACCAAGTGGCTGGGGTTGCAAACTCTTTGGGGGCAGATGTTGGCTCTAATCTTCAAGTCCCTACCTTTCTCTATGGAGCTGCCCATGAAGAGGGGAGGACACTTGATTCAATCAGAAGAGAGCTGGGTTATTTCAGGCCAACTTCTAGTGGAGAACAGTGGGTTGGGGGGCCAAAATCGGAATACTTGGCGCTGAAGCCGGACAAGGGACCCCCTCAAGTGACTCAGGGAAAAGGTGTCATTGTGATTGGAGCAACCCGGTGGGTTGATAACTATAACGTCCCAGTTTTTTCTACTGATATTGCTGCTGTTCGTAGAATTGCGAAACAAGTGAGTGGCAGAGGAGGTGGACTTCCTTCAGTCCAAGCCATGGCACTTGCACACGGTGAATGTGTCATTGAGGTAGCTTGCAATTTGTTGGAACCGGAGAAAGTGGGAGGAGATAGGGTTCAGCTTGAAGTTGAGAGGCTTTCAGAGGAAGAGGGGATAAGAGTGGGGAAGGGCTACTTCACTGATTTTTCTCAGGAAAAATTAATTGAAAGTTACTTGCTGTCAGGTTGCTGTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FTCD_N Yae1_N

Protein Analysis

427

Amino Acids

46.56

Weight (kDa)

5.18

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20830 AT2G20830 AT2G20830 AT2G20830 AT2G20830 AT2G20830
fragaria_vesca	FvH4_6g44860 FvH4_6g44860 FvH4_6g44870 FvH4_6g44870 FvH4_6g44870
malus_domestica	MD09G1092400.v1.1 MD09G1092500.v1.1 MD17G1082500.v1.1
prunus_persica	Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232700_v2.0.a1 Prupe.3G232700_v2.0.a1
pyrus_communis	pycom09g01780 pycom09g01790 pycom17g08050 pycom17g08060
rosa_chinensis	RchiOBHm_Chr2g0162051 RchiOBHm_Chr2g0162061
rosa_laevigata	RLG00000021319
rosa_multiflora	Rmu_co8364399.1_g000001 Rmu_sc0005601.1_g000004 Rmu_sc0005601.1_g000005 Rmu_sc0026966.1_g000002
rosa_roxburghii	Rroxscaffold_2G00088340 Rroxscaffold_2G00088350
rosa_rugosa	Rorug02G0494300
rosa_samantha	Rh2AG560400 Rh2AG560500 Rh2BG573700 Rh2BG573800 Rh2CG544000 Rh2CG544100 Rh2DG583700 Rh2DG583800
rosa_wichuraiana	Rw2G046410 Rw2G046420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	83
AccB7I	CCANNNNNTGG	1 cut(s)	1081
AccI	GTMKAC	1 cut(s)	198
AclWI	GGATC	3 cut(s)	563, 576, 681
AcuI	CTGAAG	2 cut(s)	926, 1053
AdeI	CACNNNGTG	1 cut(s)	1097
AfaI	GTAC	1 cut(s)	413
AfiI	CCNNNNNNNGG	6 cut(s)	274, 662, 698, 802, 917, 1081
AflIII	ACRYGT	1 cut(s)	174
AjiI	CACGTC	1 cut(s)	175
AjuI	GAANNNNNNNTTGG	2 cut(s)	858, 890
AloI	GAACNNNNNNTCC	2 cut(s)	1143, 1175
AluBI	AGCT	8 cut(s)	23, 148, 461, 469, 791, 835, 1118, 1165
AluI	AGCT	8 cut(s)	23, 148, 461, 469, 791, 835, 1118, 1165
Alw21I	GWGCWC	1 cut(s)	150
Alw26I	GTCTC	3 cut(s)	69, 503, 544
AlwI	GGATC	3 cut(s)	563, 576, 681
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	5 cut(s)	79, 115, 447, 848, 881
ApeKI	GCWGC	7 cut(s)	165, 402, 437, 461, 611, 791, 1016
AseI	ATTAAT	1 cut(s)	1244
AspLEI	GCGC	2 cut(s)	442, 904
AspS9I	GGNCC	5 cut(s)	115, 223, 712, 881, 920
AsuC2I	CCSGG	4 cut(s)	161, 194, 658, 970
AsuHPI	GGTGA	2 cut(s)	680, 1109
AvaI	CYCGRG	1 cut(s)	281
AvaII	GGWCC	3 cut(s)	223, 712, 920
BamHI	GGATCC	1 cut(s)	568
BanII	GRGCYC	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	150
BbvI	GCAGC	7 cut(s)	152, 389, 424, 448, 598, 778, 1003
BccI	CCATC	4 cut(s)	238, 568, 580, 632
BceAI	ACGGC	2 cut(s)	94, 142
BcnI	CCSGG	4 cut(s)	161, 194, 658, 970
BcoDI	GTCTC	3 cut(s)	69, 503, 544
BfaI	CTAG	2 cut(s)	83, 858
BfoI	RGCGCY	1 cut(s)	905
BisI	GCNGC	7 cut(s)	166, 403, 438, 462, 612, 792, 1017
BlpI	GCTNAGC	1 cut(s)	465
BlsI	GCNGC	7 cut(s)	167, 404, 439, 463, 613, 793, 1018
Bme1390I	CCNGG	4 cut(s)	161, 194, 658, 970
Bme18I	GGWCC	3 cut(s)	223, 712, 920
BmeT110I	CYCGRG	1 cut(s)	281
BmgBI	CACGTC	1 cut(s)	175
BmgT120I	GGNCC	5 cut(s)	115, 223, 712, 881, 920
BmiI	GGNNCC	8 cut(s)	224, 279, 552, 570, 882, 921, 922, 1134
BmrFI	CCNGG	4 cut(s)	161, 194, 658, 970
BmrI	ACTGGG	2 cut(s)	263, 989
BmsI	GCATC	2 cut(s)	381, 627
BmuI	ACTGGG	2 cut(s)	263, 989
BpiI	GAAGAC	1 cut(s)	12
BpmI	CTGGAG	1 cut(s)	464
Bpu1102I	GCTNAGC	1 cut(s)	465
BpuEI	CTTGAG	4 cut(s)	104, 601, 653, 912
BpuMI	CCSGG	4 cut(s)	161, 194, 658, 970
BsaJI	CCNNGG	5 cut(s)	160, 282, 600, 656, 1080
BsaWI	WCCGGW	1 cut(s)	1135
BsaXI	ACNNNNNCTCC	2 cut(s)	1143, 1173
Bsc4I	CCNNNNNNNGG	6 cut(s)	274, 662, 698, 802, 917, 1081
Bse1I	ACTGG	2 cut(s)	269, 995
BseDI	CCNNGG	5 cut(s)	160, 282, 600, 656, 1080
BseGI	GGATG	2 cut(s)	591, 652
BseLI	CCNNNNNNNGG	6 cut(s)	274, 662, 698, 802, 917, 1081
BseMII	CTCAG	5 cut(s)	308, 489, 555, 950, 1247
BseNI	ACTGG	2 cut(s)	269, 995
BseRI	GAGGAG	6 cut(s)	113, 158, 263, 384, 1068, 1164
BseXI	GCAGC	7 cut(s)	152, 389, 424, 448, 598, 778, 1003
BseYI	CCCAGC	2 cut(s)	722, 835
BshFI	GGCC	5 cut(s)	81, 117, 449, 850, 883
BsiHKAI	GWGCWC	1 cut(s)	150
BsiHKCI	CYCGRG	1 cut(s)	281
BsiSI	CCGG	7 cut(s)	90, 160, 193, 658, 911, 970, 1136
BslFI	GGGAC	4 cut(s)	561, 755, 933, 977
BslI	CCNNNNNNNGG	6 cut(s)	274, 662, 698, 802, 917, 1081
BsmAI	GTCTC	3 cut(s)	69, 503, 544
BsmBI	CGTCTC	1 cut(s)	69
BsmFI	GGGAC	4 cut(s)	561, 755, 933, 977
BsnI	GGCC	5 cut(s)	81, 117, 449, 850, 883
BsoBI	CYCGRG	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp1407I	TGTACA	1 cut(s)	411
Bsp143I	GATC	2 cut(s)	568, 673
Bsp1720I	GCTNAGC	1 cut(s)	465
Bsp19I	CCATGG	2 cut(s)	600, 1080
BspANI	GGCC	5 cut(s)	81, 117, 449, 850, 883
BspCNI	CTCAG	5 cut(s)	309, 488, 556, 949, 1246
BspLI	GGNNCC	8 cut(s)	224, 279, 552, 570, 882, 921, 922, 1134
BspPI	GGATC	3 cut(s)	563, 576, 681
BsrGI	TGTACA	1 cut(s)	411
BsrI	ACTGG	2 cut(s)	269, 995
BssECI	CCNNGG	5 cut(s)	160, 282, 600, 656, 1080
BssMI	GATC	2 cut(s)	568, 673
BssT1I	CCWWGG	2 cut(s)	600, 1080
Bst4CI	ACNGT	3 cut(s)	210, 870, 1097
Bst6I	CTCTTC	3 cut(s)	795, 823, 1185
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstAUI	TGTACA	1 cut(s)	411
BstC8I	GCNNGC	3 cut(s)	459, 597, 1120
BstDEI	CTNAG	6 cut(s)	317, 465, 475, 564, 936, 1233
BstDSI	CCRYGG	2 cut(s)	600, 1080
BstF5I	GGATG	2 cut(s)	591, 652
BstH2I	RGCGCY	1 cut(s)	905
BstHHI	GCGC	2 cut(s)	442, 904
BstKTI	GATC	2 cut(s)	571, 676
BstMAI	GTCTC	3 cut(s)	69, 503, 544
BstMBI	GATC	2 cut(s)	568, 673
BstMWI	GCNNNNNNNGC	5 cut(s)	341, 350, 446, 596, 728
BstSCI	CCNGG	4 cut(s)	159, 192, 656, 968
BstV1I	GCAGC	7 cut(s)	152, 389, 424, 448, 598, 778, 1003
BstV2I	GAAGAC	1 cut(s)	12
BstX2I	RGATCY	1 cut(s)	568
BstXI	CCANNNNNNTGG	1 cut(s)	722
BstYI	RGATCY	1 cut(s)	568
BsuRI	GGCC	5 cut(s)	81, 117, 449, 850, 883
BtgI	CCRYGG	2 cut(s)	600, 1080
BtrI	CACGTC	1 cut(s)	175
BtsCI	GGATG	2 cut(s)	591, 652
BtsI	GCAGTG	1 cut(s)	597
BtsIMutI	CAGTG	3 cut(s)	597, 875, 1221
Cac8I	GCNNGC	3 cut(s)	459, 597, 1120
CfoI	GCGC	2 cut(s)	442, 904
Cfr13I	GGNCC	5 cut(s)	115, 223, 712, 881, 920
Csp6I	GTAC	1 cut(s)	412
CspCI	CAANNNNNGTGG	2 cut(s)	93, 128
CviAII	CATG	3 cut(s)	601, 797, 1081
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	6 cut(s)	317, 465, 475, 564, 936, 1233
DpnI	GATC	2 cut(s)	570, 675
DpnII	GATC	2 cut(s)	568, 673
DraIII	CACNNNGTG	1 cut(s)	1097
DrdI	GACNNNNNNGTC	1 cut(s)	83
DseDI	GACNNNNNNGTC	1 cut(s)	83
Eam1104I	CTCTTC	3 cut(s)	795, 823, 1185
EarI	CTCTTC	3 cut(s)	795, 823, 1185
Ecl136II	GAGCTC	1 cut(s)	148
Eco130I	CCWWGG	2 cut(s)	600, 1080
Eco24I	GRGCYC	1 cut(s)	150
Eco47I	GGWCC	3 cut(s)	223, 712, 920
Eco53kI	GAGCTC	1 cut(s)	148
Eco57I	CTGAAG	2 cut(s)	926, 1053
Eco88I	CYCGRG	1 cut(s)	281
EcoICRI	GAGCTC	1 cut(s)	148
EcoO109I	RGGNCCY	1 cut(s)	920
EcoT14I	CCWWGG	2 cut(s)	600, 1080
EcoT22I	ATGCAT	1 cut(s)	642
EcoT38I	GRGCYC	1 cut(s)	150
ErhI	CCWWGG	2 cut(s)	600, 1080
Esp3I	CGTCTC	1 cut(s)	69
FaeI	CATG	3 cut(s)	604, 800, 1084
FalI	AAGNNNNNCTT	4 cut(s)	113, 145, 1202, 1234
FaqI	GGGAC	4 cut(s)	561, 755, 933, 977
FatI	CATG	3 cut(s)	600, 796, 1080
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	7 cut(s)	166, 403, 438, 462, 612, 792, 1017
FokI	GGATG	2 cut(s)	598, 639
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	7 cut(s)	166, 403, 438, 462, 612, 792, 1017
FspBI	CTAG	2 cut(s)	83, 858
GlaI	GCGC	2 cut(s)	441, 903
GluI	GCNGC	7 cut(s)	166, 403, 438, 462, 612, 792, 1017
GsaI	CCCAGC	2 cut(s)	726, 839
GsuI	CTGGAG	1 cut(s)	464
HaeII	RGCGCY	1 cut(s)	905
HaeIII	GGCC	5 cut(s)	81, 117, 449, 850, 883
HapII	CCGG	7 cut(s)	90, 160, 193, 658, 911, 970, 1136
HhaI	GCGC	2 cut(s)	442, 904
Hin1II	CATG	3 cut(s)	604, 800, 1084
Hin6I	GCGC	2 cut(s)	440, 902
HinP1I	GCGC	2 cut(s)	440, 902
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	3 cut(s)	28, 818, 934
HpaII	CCGG	7 cut(s)	90, 160, 193, 658, 911, 970, 1136
HphI	GGTGA	2 cut(s)	680, 1109
Hpy166II	GTNNAC	4 cut(s)	172, 199, 412, 1061
Hpy188I	TCNGA	8 cut(s)	318, 421, 478, 565, 665, 827, 892, 1186
Hpy188III	TCNNGA	3 cut(s)	226, 299, 1235
Hpy8I	GTNNAC	4 cut(s)	172, 199, 412, 1061
HpyAV	CCTTC	4 cut(s)	59, 223, 1077, 1204
HpyCH4III	ACNGT	3 cut(s)	210, 870, 1097
HpyCH4IV	ACGT	2 cut(s)	174, 990
HpyCH4V	TGCA	6 cut(s)	188, 405, 640, 731, 1091, 1122
HpyF10VI	GCNNNNNNNGC	5 cut(s)	341, 350, 446, 596, 728
HpyF3I	CTNAG	6 cut(s)	317, 465, 475, 564, 936, 1233
HpySE526I	ACGT	2 cut(s)	174, 990
Hsp92II	CATG	3 cut(s)	604, 800, 1084
HspAI	GCGC	2 cut(s)	440, 902
KflI	GGGWCCC	1 cut(s)	920
Kzo9I	GATC	2 cut(s)	568, 673
LmnI	GCTCC	4 cut(s)	145, 556, 788, 962
Lsp1109I	GCAGC	7 cut(s)	152, 389, 424, 448, 598, 778, 1003
LweI	GCATC	2 cut(s)	381, 627
MaeI	CTAG	2 cut(s)	83, 858
MaeII	ACGT	2 cut(s)	174, 990
MaeIII	GTNAC	3 cut(s)	527, 931, 1253
MalI	GATC	2 cut(s)	570, 675
MboI	GATC	2 cut(s)	568, 673
MboII	GAAGA	6 cut(s)	17, 515, 755, 812, 840, 1202
MflI	RGATCY	1 cut(s)	568
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	4 cut(s)	1029, 1123, 1241, 1245
MlyI	GAGTC	1 cut(s)	928
MmeI	TCCRAC	1 cut(s)	1110
Mph1103I	ATGCAT	1 cut(s)	642
MseI	TTAA	2 cut(s)	606, 1244
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	7 cut(s)	90, 160, 193, 658, 911, 970, 1136
MspR9I	CCNGG	4 cut(s)	161, 194, 658, 970
MwoI	GCNNNNNNNGC	5 cut(s)	341, 350, 446, 596, 728
NciI	CCSGG	4 cut(s)	161, 194, 658, 970
NcoI	CCATGG	2 cut(s)	600, 1080
NdeII	GATC	2 cut(s)	568, 673
NlaIII	CATG	3 cut(s)	604, 800, 1084
NlaIV	GGNNCC	8 cut(s)	224, 279, 552, 570, 882, 921, 922, 1134
NmeAIII	GCCGAG	1 cut(s)	129
NmuCI	GTSAC	1 cut(s)	931
NsiI	ATGCAT	1 cut(s)	642
PfeI	GAWTC	2 cut(s)	28, 818
PflMI	CCANNNNNTGG	1 cut(s)	1081
PkrI	GCNGC	7 cut(s)	167, 404, 439, 463, 613, 793, 1018
PleI	GAGTC	1 cut(s)	928
PpsI	GAGTC	1 cut(s)	928
PpuMI	RGGWCCY	1 cut(s)	920
PshBI	ATTAAT	1 cut(s)	1244
Psp124BI	GAGCTC	1 cut(s)	150
Psp5II	RGGWCCY	1 cut(s)	920
PspFI	CCCAGC	2 cut(s)	722, 835
PspN4I	GGNNCC	8 cut(s)	224, 279, 552, 570, 882, 921, 922, 1134
PspPI	GGNCC	5 cut(s)	115, 223, 712, 881, 920
PspPPI	RGGWCCY	1 cut(s)	920
PsuI	RGATCY	1 cut(s)	568
PvuII	CAGCTG	1 cut(s)	23
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
SacI	GAGCTC	1 cut(s)	150
SalI	GTCGAC	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	606, 1244
SatI	GCNGC	7 cut(s)	166, 403, 438, 462, 612, 792, 1017
Sau3AI	GATC	2 cut(s)	568, 673
Sau96I	GGNCC	5 cut(s)	115, 223, 712, 881, 920
SchI	GAGTC	1 cut(s)	928
ScrFI	CCNGG	4 cut(s)	161, 194, 658, 970
SduI	GDGCHC	1 cut(s)	150
SfaNI	GCATC	2 cut(s)	381, 627
SinI	GGWCC	3 cut(s)	223, 712, 920
SmlI	CTYRAG	4 cut(s)	119, 580, 632, 927
SmoI	CTYRAG	4 cut(s)	119, 580, 632, 927
Sse9I	AATT	4 cut(s)	1029, 1123, 1241, 1245
SspMI	CTAG	2 cut(s)	83, 858
SstI	GAGCTC	1 cut(s)	150
StyD4I	CCNGG	4 cut(s)	159, 192, 656, 968
StyI	CCWWGG	2 cut(s)	600, 1080
TaaI	ACNGT	3 cut(s)	210, 870, 1097
TaiI	ACGT	2 cut(s)	177, 993
TaqI	TCGA	4 cut(s)	60, 198, 389, 627
TasI	AATT	4 cut(s)	1029, 1123, 1241, 1245
TatI	WGTACW	1 cut(s)	411
TfiI	GAWTC	2 cut(s)	28, 818
Tru1I	TTAA	2 cut(s)	606, 1244
Tru9I	TTAA	2 cut(s)	606, 1244
TscAI	CASTG	3 cut(s)	597, 875, 1228
TseFI	GTSAC	1 cut(s)	931
TseI	GCWGC	7 cut(s)	165, 402, 437, 461, 611, 791, 1016
Tsp45I	GTSAC	1 cut(s)	931
TspDTI	ATGAA	2 cut(s)	78, 813
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	3 cut(s)	597, 875, 1228
Van91I	CCANNNNNTGG	1 cut(s)	1081
VpaK11BI	GGWCC	3 cut(s)	223, 712, 920
VspI	ATTAAT	1 cut(s)	1244
XmiI	GTMKAC	1 cut(s)	198
XspI	CTAG	2 cut(s)	83, 858
Zsp2I	ATGCAT	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.