AT2G23070

Casein kinase II

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
9823642 .. 9826898
3257 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G23070.1

Sequence Viewer

Length: 1299 bp
ATGGCCTTAAGGCCTTGTACTGGATTCACAATCTCCTCTCTTCGCAACGCTTCCGCCGCCAACAACAATCTCTTCTCTCTCCTCTCCTTCTCTTCGTCGTCTCCGGCGAAGAGGAATCTTCTTCTCTCTTCGCTCCAGGACAATCTCCGTCGTTTCGCATCCAGCGCTTCTCTTTACCGTCAACATCTCCGGAATCAACAACAACAACATCAGCAACAACAGCAATCGCGCGTGAAAGAAAAATCAGAAACGCTGGCTCAGAAGATCGGTAAATCTATCCGGCGTGCCGGTGCGCCGTCGAAAGCTAGGGTTTACGCTGATGTCAACGTTGTTAGACCTAAGGACTATTGGGATTACGAGTCCCTTGCTGTTCAATGGGGTGTACAGGATGATTATGAGGTGGTGAGGAAGGTAGGAAGGGGAAAATACAGTGAGGTCTTTGAAGGCATTCATGCTACTGATAACGAGAAATGTGTTATCAAGATTTTGAAGCCTGTGAAGAAGAAGAAGATTAAGAGAGAGATTAAGATTCTGCAGAACCTCTGCGGTGGGCCTAATATTGTAAAATTGCTCGACATTGTTAGAGATCAGCAGTCTAAGACGCCCAGCTTGATATTTGAACATGTGAACAATAAAGATTTCAAAGTTCTCTATCCAACTCTCTCAGACTATGATGTTCGATATTACATTTTTGAACTTCTAAAGGCGTTGGATTTCTGCCATTCACGTGGAATCATGCACAGAGATGTGAAACCACATAATGTCATGATTGATCACGAGCAGCGAAAACTTCGTTTAATTGACTGGGGTTTGGCAGAATTCTATCATCCTGGGAAAGAATACAATGTCCGTGTTGCTTCAAGGTACTTTAAGGGTCCAGAGCTGCTGGTGGATTTACAGGACTATGATTATTCCTTAGACCTATGGAGTCTTGGGTGTATGTTTGCTGGAATGATATTCCGCAAGGAGCCGTTCTTTTATGGCCATGACAACTATGATCAATTGGTCAAAATTGCGAAGGTGCTTGGCACAGATGAACTCAACGCCTACCTAAACAAATACCGTATAGAGTTGGACCCTAATCTAACATCCCTCGTGGGCAGACATAGCCGGAAGCCATGGACAAAGTTCATCAATTCTGAAAACCAGCACTTAGCAGTTCCTGAGGCTGTTGATTTTGTGGACAAGTTGCTGAGATATGATCACCAAGAAAGGCCAACAGCTAAAGAAGCAATGGCGCATCCATATTTCTATCCGATTAGAAATGCAGAGAGCAGCCGTACGCCGCGCAGCCAGTGA

Protein Analysis

432

Amino Acids

50.24

Weight (kDa)

9.48

Isoelectric Point (pI)

47.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 132 - 417 7.8e-62 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 134 - 331 2.3e-17 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 229, 231, 1288
AccIII TCCGGA 1 cut(s) 189
AciI CCGC 5 cut(s) 54, 57, 546, 961, 1286
AclI AACGTT 1 cut(s) 327
AcoI YGGCCR 1 cut(s) 982
AcsI RAATTY 1 cut(s) 818
AcvI CACGTG 1 cut(s) 728
AcyI GRCGYC 1 cut(s) 602
AfaI GTAC 4 cut(s) 19, 384, 866, 1282
AfeI AGCGCT 1 cut(s) 166
AfiI CCNNNNNNNGG 1 cut(s) 20
AflII CTTAAG 1 cut(s) 7
AflIII ACRYGT 1 cut(s) 622
AgsI TTSAA 7 cut(s) 374, 443, 490, 620, 643, 695, 861
AjnI CCWGG 2 cut(s) 135, 829
AluBI AGCT 4 cut(s) 305, 609, 883, 1223
AluI AGCT 4 cut(s) 305, 609, 883, 1223
Alw26I GTCTC 1 cut(s) 105
AlwNI CAGNNNCTG 1 cut(s) 1163
Aor13HI TCCGGA 1 cut(s) 189
Aor51HI AGCGCT 1 cut(s) 166
AoxI GGCC 5 cut(s) 3, 11, 551, 982, 1214
ApeKI GCWGC 4 cut(s) 781, 883, 1275, 1290
ApoI RAATTY 1 cut(s) 818
Asp700I GAANNNNTTC 1 cut(s) 447
AspLEI GCGC 5 cut(s) 167, 231, 295, 1240, 1290
AspS9I GGNCC 3 cut(s) 551, 875, 1075
AsuHPI GGTGA 2 cut(s) 415, 1196
AvaII GGWCC 2 cut(s) 875, 1075
AxyI CCTNAGG 2 cut(s) 339, 1164
BalI TGGCCA 1 cut(s) 984
BauI CACGAG 2 cut(s) 776, 1094
BbrPI CACGTG 1 cut(s) 728
BbvI GCAGC 3 cut(s) 793, 870, 1287
BceAI ACGGC 3 cut(s) 280, 955, 1263
BcgI CGANNNNNNTGC 2 cut(s) 347, 381
BciT130I CCWGG 2 cut(s) 137, 831
BclI TGATCA 3 cut(s) 772, 997, 1201
BcoDI GTCTC 1 cut(s) 105
BfaI CTAG 1 cut(s) 306
BfmI CTRYAG 1 cut(s) 533
BfoI RGCGCY 1 cut(s) 168
BfrI CTTAAG 1 cut(s) 7
BisI GCNGC 6 cut(s) 57, 782, 884, 1276, 1286, 1291
BlsI GCNGC 6 cut(s) 58, 783, 885, 1277, 1287, 1292
Bme1390I CCNGG 2 cut(s) 137, 831
Bme18I GGWCC 2 cut(s) 875, 1075
BmgT120I GGNCC 3 cut(s) 551, 875, 1075
BmiI GGNNCC 3 cut(s) 876, 969, 1077
BmrFI CCNGG 2 cut(s) 137, 831
BmrI ACTGGG 1 cut(s) 814
BmsI GCATC 2 cut(s) 167, 1249
BmuI ACTGGG 1 cut(s) 814
BpmI CTGGAG 1 cut(s) 119
BsaAI YACGTR 1 cut(s) 728
BsaHI GRCGYC 1 cut(s) 602
BsaJI CCNNGG 2 cut(s) 830, 1118
BsaWI WCCGGW 1 cut(s) 189
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse118I RCCGGY 1 cut(s) 287
Bse1I ACTGG 3 cut(s) 25, 809, 1294
Bse21I CCTNAGG 2 cut(s) 339, 1164
Bse3DI GCAATG 1 cut(s) 1239
BseAI TCCGGA 1 cut(s) 189
BseBI CCWGG 2 cut(s) 137, 831
BseDI CCNNGG 2 cut(s) 830, 1118
BseGI GGATG 5 cut(s) 158, 394, 826, 1088, 1240
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMI GCAATG 1 cut(s) 1239
BseMII CTCAG 4 cut(s) 272, 678, 1155, 1184
BseNI ACTGG 3 cut(s) 25, 809, 1294
BseRI GAGGAG 2 cut(s) 25, 71
BseXI GCAGC 3 cut(s) 793, 870, 1287
BseYI CCCAGC 1 cut(s) 605
Bsh1236I CGCG 3 cut(s) 229, 231, 1288
BshFI GGCC 5 cut(s) 5, 13, 553, 984, 1216
BsiSI CCGG 5 cut(s) 104, 190, 280, 288, 1111
BsiWI CGTACG 1 cut(s) 1280
BslFI GGGAC 1 cut(s) 346
BslI CCNNNNNNNGG 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 105
BsmBI CGTCTC 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 346
BsmI GAATGC 1 cut(s) 447
BsnI GGCC 5 cut(s) 5, 13, 553, 984, 1216
Bsp13I TCCGGA 1 cut(s) 189
Bsp1407I TGTACA 1 cut(s) 382
Bsp143I GATC 5 cut(s) 264, 586, 772, 997, 1201
Bsp19I CCATGG 1 cut(s) 1118
BspACI CCGC 5 cut(s) 54, 57, 546, 961, 1286
BspANI GGCC 5 cut(s) 5, 13, 553, 984, 1216
BspCNI CTCAG 4 cut(s) 271, 677, 1156, 1185
BspEI TCCGGA 1 cut(s) 189
BspFNI CGCG 3 cut(s) 229, 231, 1288
BspHI TCATGA 1 cut(s) 765
BspLI GGNNCC 3 cut(s) 876, 969, 1077
BspMAI CTGCAG 1 cut(s) 537
BspTI CTTAAG 1 cut(s) 7
BsrDI GCAATG 1 cut(s) 1239
BsrFI RCCGGY 1 cut(s) 287
BsrGI TGTACA 1 cut(s) 382
BsrI ACTGG 3 cut(s) 25, 809, 1294
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 2 cut(s) 830, 1118
BssMI GATC 5 cut(s) 264, 586, 772, 997, 1201
BssNI GRCGYC 1 cut(s) 602
BssSI CACGAG 2 cut(s) 776, 1094
BssT1I CCWWGG 1 cut(s) 1118
Bst2BI CACGAG 2 cut(s) 776, 1094
Bst2UI CCWGG 2 cut(s) 137, 831
Bst4CI ACNGT 3 cut(s) 179, 431, 1064
Bst6I CTCTTC 5 cut(s) 45, 77, 97, 104, 133
BstACI GRCGYC 1 cut(s) 602
BstAFI CTTAAG 1 cut(s) 7
BstAUI TGTACA 1 cut(s) 382
BstBAI YACGTR 1 cut(s) 728
BstC8I GCNNGC 2 cut(s) 255, 285
BstDEI CTNAG 8 cut(s) 258, 339, 597, 664, 916, 1153, 1164, 1193
BstDSI CCRYGG 1 cut(s) 1118
BstF5I GGATG 5 cut(s) 158, 394, 826, 1088, 1240
BstFNI CGCG 3 cut(s) 229, 231, 1288
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 5 cut(s) 167, 231, 295, 1240, 1290
BstKTI GATC 5 cut(s) 267, 589, 775, 1000, 1204
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 5 cut(s) 264, 586, 772, 997, 1201
BstMWI GCNNNNNNNGC 5 cut(s) 56, 164, 220, 1107, 1229
BstNI CCWGG 2 cut(s) 137, 831
BstNSI RCATGY 1 cut(s) 626
BstSCI CCNGG 2 cut(s) 135, 829
BstSFI CTRYAG 1 cut(s) 533
BstUI CGCG 3 cut(s) 229, 231, 1288
BstV1I GCAGC 3 cut(s) 793, 870, 1287
BstXI CCANNNNNNTGG 1 cut(s) 728
Bsu36I CCTNAGG 2 cut(s) 339, 1164
BsuRI GGCC 5 cut(s) 5, 13, 553, 984, 1216
BtgI CCRYGG 1 cut(s) 1118
BtsCI GGATG 5 cut(s) 158, 394, 826, 1088, 1240
BtsIMutI CAGTG 1 cut(s) 436
Cac8I GCNNGC 2 cut(s) 255, 285
CaiI CAGNNNCTG 1 cut(s) 1163
CciI TCATGA 1 cut(s) 765
CfoI GCGC 5 cut(s) 167, 231, 295, 1240, 1290
Cfr10I RCCGGY 1 cut(s) 287
Cfr13I GGNCC 3 cut(s) 551, 875, 1075
CseI GACGC 1 cut(s) 610
Csp6I GTAC 4 cut(s) 18, 383, 865, 1281
CviAII CATG 6 cut(s) 452, 623, 736, 766, 986, 1119
CviQI GTAC 4 cut(s) 18, 383, 865, 1281
DdeI CTNAG 8 cut(s) 258, 339, 597, 664, 916, 1153, 1164, 1193
DpnI GATC 5 cut(s) 266, 588, 774, 999, 1203
DpnII GATC 5 cut(s) 264, 586, 772, 997, 1201
EaeI YGGCCR 1 cut(s) 982
Eam1104I CTCTTC 5 cut(s) 45, 77, 97, 104, 133
EarI CTCTTC 5 cut(s) 45, 77, 97, 104, 133
EciI GGCGGA 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 1118
Eco147I AGGCCT 1 cut(s) 13
Eco47I GGWCC 2 cut(s) 875, 1075
Eco47III AGCGCT 1 cut(s) 166
Eco72I CACGTG 1 cut(s) 728
Eco81I CCTNAGG 2 cut(s) 339, 1164
EcoRI GAATTC 1 cut(s) 818
EcoRII CCWGG 2 cut(s) 135, 829
EcoT14I CCWWGG 1 cut(s) 1118
ErhI CCWWGG 1 cut(s) 1118
Esp3I CGTCTC 1 cut(s) 105
FaeI CATG 6 cut(s) 455, 626, 739, 769, 989, 1122
FaqI GGGAC 1 cut(s) 346
FatI CATG 6 cut(s) 451, 622, 735, 765, 985, 1118
FbaI TGATCA 3 cut(s) 772, 997, 1201
Fnu4HI GCNGC 6 cut(s) 57, 782, 884, 1276, 1286, 1291
FokI GGATG 5 cut(s) 145, 401, 813, 1075, 1227
Fsp4HI GCNGC 6 cut(s) 57, 782, 884, 1276, 1286, 1291
FspBI CTAG 1 cut(s) 306
GlaI GCGC 5 cut(s) 166, 230, 294, 1239, 1289
GluI GCNGC 6 cut(s) 57, 782, 884, 1276, 1286, 1291
GsaI CCCAGC 1 cut(s) 609
GsuI CTGGAG 1 cut(s) 119
HaeII RGCGCY 1 cut(s) 168
HaeIII GGCC 5 cut(s) 5, 13, 553, 984, 1216
HapII CCGG 5 cut(s) 104, 190, 280, 288, 1111
HgaI GACGC 1 cut(s) 610
HhaI GCGC 5 cut(s) 167, 231, 295, 1240, 1290
Hin1I GRCGYC 1 cut(s) 602
Hin1II CATG 6 cut(s) 455, 626, 739, 769, 989, 1122
Hin6I GCGC 5 cut(s) 165, 229, 293, 1238, 1288
HinP1I GCGC 5 cut(s) 165, 229, 293, 1238, 1288
HincII GTYRAC 2 cut(s) 182, 325
HindII GTYRAC 2 cut(s) 182, 325
HinfI GANTC 7 cut(s) 24, 115, 193, 359, 529, 732, 928
HpaII CCGG 5 cut(s) 104, 190, 280, 288, 1111
HphI GGTGA 2 cut(s) 415, 1196
Hpy166II GTNNAC 6 cut(s) 182, 313, 325, 383, 628, 1183
Hpy188I TCNGA 5 cut(s) 247, 261, 667, 1141, 1257
Hpy188III TCNNGA 6 cut(s) 190, 481, 766, 776, 878, 1163
Hpy8I GTNNAC 6 cut(s) 182, 313, 325, 383, 628, 1183
Hpy99I CGWCG 3 cut(s) 100, 153, 301
HpyAV CCTTC 5 cut(s) 97, 403, 411, 437, 1012
HpyCH4III ACNGT 3 cut(s) 179, 431, 1064
HpyCH4IV ACGT 2 cut(s) 327, 727
HpyCH4V TGCA 3 cut(s) 535, 739, 1268
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 164, 220, 1107, 1229
HpyF3I CTNAG 8 cut(s) 258, 339, 597, 664, 916, 1153, 1164, 1193
HpySE526I ACGT 2 cut(s) 327, 727
Hsp92I GRCGYC 1 cut(s) 602
Hsp92II CATG 6 cut(s) 455, 626, 739, 769, 989, 1122
HspAI GCGC 5 cut(s) 165, 229, 293, 1238, 1288
Kpn2I TCCGGA 1 cut(s) 189
Ksp22I TGATCA 3 cut(s) 772, 997, 1201
Kzo9I GATC 5 cut(s) 264, 586, 772, 997, 1201
LmnI GCTCC 2 cut(s) 138, 967
Lsp1109I GCAGC 3 cut(s) 793, 870, 1287
LweI GCATC 2 cut(s) 167, 1249
MaeI CTAG 1 cut(s) 306
MaeII ACGT 2 cut(s) 327, 727
MalI GATC 5 cut(s) 266, 588, 774, 999, 1203
MboI GATC 5 cut(s) 264, 586, 772, 997, 1201
MfeI CAATTG 1 cut(s) 1001
MlsI TGGCCA 1 cut(s) 984
MluCI AATT 6 cut(s) 566, 798, 818, 1001, 1011, 1135
MluNI TGGCCA 1 cut(s) 984
MlyI GAGTC 2 cut(s) 368, 937
MmeI TCCRAC 3 cut(s) 680, 690, 1053
MnlI CCTC 9 cut(s) 46, 92, 105, 391, 399, 427, 551, 1103, 1159
Mox20I TGGCCA 1 cut(s) 984
MroI TCCGGA 1 cut(s) 189
MroXI GAANNNNTTC 1 cut(s) 447
MscI TGGCCA 1 cut(s) 984
MseI TTAA 5 cut(s) 8, 513, 525, 797, 870
MslI CAYNNNNRTG 2 cut(s) 726, 744
Msp20I TGGCCA 1 cut(s) 984
MspCI CTTAAG 1 cut(s) 7
MspI CCGG 5 cut(s) 104, 190, 280, 288, 1111
MspR9I CCNGG 2 cut(s) 137, 831
MunI CAATTG 1 cut(s) 1001
Mva1269I GAATGC 1 cut(s) 447
MvaI CCWGG 2 cut(s) 137, 831
MvnI CGCG 3 cut(s) 229, 231, 1288
MwoI GCNNNNNNNGC 5 cut(s) 56, 164, 220, 1107, 1229
NcoI CCATGG 1 cut(s) 1118
NdeII GATC 5 cut(s) 264, 586, 772, 997, 1201
NlaIII CATG 6 cut(s) 455, 626, 739, 769, 989, 1122
NlaIV GGNNCC 3 cut(s) 876, 969, 1077
NspI RCATGY 1 cut(s) 626
PagI TCATGA 1 cut(s) 765
PceI AGGCCT 1 cut(s) 13
PciI ACATGT 1 cut(s) 622
PcsI WCGNNNNNNNCGW 1 cut(s) 104
PctI GAATGC 1 cut(s) 447
PdmI GAANNNNTTC 1 cut(s) 447
PfeI GAWTC 5 cut(s) 24, 115, 193, 529, 732
Pfl23II CGTACG 1 cut(s) 1280
PfoI TCCNGGA 1 cut(s) 135
PkrI GCNGC 6 cut(s) 58, 783, 885, 1277, 1287, 1292
PleI GAGTC 2 cut(s) 367, 936
PmaCI CACGTG 1 cut(s) 728
PmlI CACGTG 1 cut(s) 728
PpsI GAGTC 2 cut(s) 367, 936
Ppu21I YACGTR 1 cut(s) 728
PscI ACATGT 1 cut(s) 622
Psp1406I AACGTT 1 cut(s) 327
Psp6I CCWGG 2 cut(s) 135, 829
PspCI CACGTG 1 cut(s) 728
PspFI CCCAGC 1 cut(s) 605
PspGI CCWGG 2 cut(s) 135, 829
PspLI CGTACG 1 cut(s) 1280
PspN4I GGNNCC 3 cut(s) 876, 969, 1077
PspPI GGNCC 3 cut(s) 551, 875, 1075
PstI CTGCAG 1 cut(s) 537
PstNI CAGNNNCTG 1 cut(s) 1163
RsaI GTAC 4 cut(s) 19, 384, 866, 1282
RsaNI GTAC 4 cut(s) 18, 383, 865, 1281
RseI CAYNNNNRTG 2 cut(s) 726, 744
SaqAI TTAA 5 cut(s) 8, 513, 525, 797, 870
SatI GCNGC 6 cut(s) 57, 782, 884, 1276, 1286, 1291
Sau3AI GATC 5 cut(s) 264, 586, 772, 997, 1201
Sau96I GGNCC 3 cut(s) 551, 875, 1075
SchI GAGTC 2 cut(s) 368, 937
ScrFI CCNGG 2 cut(s) 137, 831
SfaNI GCATC 2 cut(s) 167, 1249
SfcI CTRYAG 1 cut(s) 533
SinI GGWCC 2 cut(s) 875, 1075
SmiMI CAYNNNNRTG 2 cut(s) 726, 744
SmlI CTYRAG 1 cut(s) 7
SmoI CTYRAG 1 cut(s) 7
Sse9I AATT 6 cut(s) 566, 798, 818, 1001, 1011, 1135
SseBI AGGCCT 1 cut(s) 13
SsiI CCGC 5 cut(s) 54, 57, 546, 961, 1286
SspI AATATT 1 cut(s) 559
SspMI CTAG 1 cut(s) 306
StuI AGGCCT 1 cut(s) 13
StyD4I CCNGG 2 cut(s) 135, 829
StyI CCWWGG 1 cut(s) 1118
TaaI ACNGT 3 cut(s) 179, 431, 1064
TaiI ACGT 2 cut(s) 330, 730
TaqI TCGA 3 cut(s) 299, 573, 679
TasI AATT 6 cut(s) 566, 798, 818, 1001, 1011, 1135
TatI WGTACW 2 cut(s) 17, 382
TauI GCSGC 2 cut(s) 59, 1288
TfiI GAWTC 5 cut(s) 24, 115, 193, 529, 732
Tru1I TTAA 5 cut(s) 8, 513, 525, 797, 870
Tru9I TTAA 5 cut(s) 8, 513, 525, 797, 870
TscAI CASTG 1 cut(s) 436
TseI GCWGC 4 cut(s) 781, 883, 1275, 1290
TspDTI ATGAA 3 cut(s) 440, 1050, 1120
TspGWI ACGGA 2 cut(s) 137, 839
TspRI CASTG 1 cut(s) 436
Vha464I CTTAAG 1 cut(s) 7
VpaK11BI GGWCC 2 cut(s) 875, 1075
XapI RAATTY 1 cut(s) 818
XceI RCATGY 1 cut(s) 626
XmnI GAANNNNTTC 1 cut(s) 447
XspI CTAG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.