Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002706

Physical Location & Seq

Genomic Coordinates Reverse (-)

13955759 .. 13963498

Gene Structure 7740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG164100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGAGACTTCACACCTTGGAGGCGTTTATAGATCAGGCCGTGCGGGGGTTTGTTTTTGTTCATTACCTTATGTTGTTCCCTGATGGCACACTTTGCAGGTATTTCAAAGTTGTACAAGATTATGACTATTCTTTGGACTTGTGGAGTCTTGGTTGTATGTTTCCTGGAATGTTTTTTGCTGGTATATTATATCATCCTCAATCAACCCTGACAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0031974 GO:0031981 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

72

Amino Acids

8.45

Weight (kDa)

5.74

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23070
fragaria_vesca	FvH4_1g17410
malus_domestica	MD02G1183300.v1.1 MD08G1087500.v1.1 MD15G1295000.v1.1
prunus_persica	Prupe.6G222700_v2.0.a1 Prupe.6G222700_v2.0.a1
pyrus_communis	pycom02g14890 pycom02g14900
rosa_chinensis	RchiOBHm_Chr2g0107601 RchiOBHm_Chr4g0423111
rosa_laevigata	RLG00000015367 RLG00000017594 RLG00000019619 RLG00000033266
rosa_multiflora	Rmu_co8147378.1_g000001 Rmu_sc0000800.1_g000031 Rmu_sc0028958.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122390 Rroxscaffold_2G00136160 Rroxscaffold_6G00412260
rosa_rugosa	Rorug01G0255400 Rorug02G0145700 Rorug02G0145800 Rorug02G0145900
rosa_samantha	Rh2AG195200 Rh2BG207800 Rh2CG200400 Rh2CG269000 Rh2DG202800 Rh4AG035300 Rh4AG243500 Rh4BG128100 Rh4BG248200 Rh4CG032800 Rh5CG247100 Rh6AG034200 Rh7AG164100
rosa_wichuraiana	Rw2G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	87
AciI	CCGC	1 cut(s)	43
AfaI	GTAC	1 cut(s)	114
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgsI	TTSAA	1 cut(s)	106
AjnI	CCWGG	1 cut(s)	163
AoxI	GGCC	1 cut(s)	36
BccI	CCATC	1 cut(s)	77
BceAI	ACGGC	1 cut(s)	23
BciT130I	CCWGG	1 cut(s)	165
BfuAI	ACCTGC	1 cut(s)	87
Bme1390I	CCNGG	1 cut(s)	165
BmrFI	CCNGG	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	15
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	1 cut(s)	193
BseLI	CCNNNNNNNGG	1 cut(s)	45
BshFI	GGCC	1 cut(s)	38
BslI	CCNNNNNNNGG	1 cut(s)	45
BsnI	GGCC	1 cut(s)	38
Bsp1407I	TGTACA	1 cut(s)	112
Bsp143I	GATC	1 cut(s)	31
BspACI	CCGC	1 cut(s)	43
BspANI	GGCC	1 cut(s)	38
BspMI	ACCTGC	1 cut(s)	87
BsrGI	TGTACA	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	1 cut(s)	31
BssT1I	CCWWGG	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	165
BstAPI	GCANNNNNTGC	1 cut(s)	93
BstAUI	TGTACA	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	1 cut(s)	93
BstNI	CCWGG	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	193
BveI	ACCTGC	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	113
CviJI	RGCY	1 cut(s)	38
CviKI_1	RGCY	1 cut(s)	38
CviQI	GTAC	1 cut(s)	113
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	15
EcoRII	CCWGG	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	15
FaiI	YATR	7 cut(s)	29, 71, 123, 158, 185, 190, 217
FauI	CCCGC	1 cut(s)	36
FokI	GGATG	1 cut(s)	180
HaeIII	GGCC	1 cut(s)	38
HinfI	GANTC	1 cut(s)	145
HpyCH4V	TGCA	1 cut(s)	96
HpyF10VI	GCNNNNNNNGC	1 cut(s)	93
Kzo9I	GATC	1 cut(s)	31
LpnPI	CCDG	6 cut(s)	20, 82, 93, 150, 165, 177
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MlyI	GAGTC	1 cut(s)	154
MnlI	CCTC	2 cut(s)	13, 207
MspR9I	CCNGG	1 cut(s)	165
MvaI	CCWGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	1 cut(s)	93
NdeII	GATC	1 cut(s)	31
PfoI	TCCNGGA	1 cut(s)	163
PleI	GAGTC	1 cut(s)	153
PpsI	GAGTC	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	163
PspGI	CCWGG	1 cut(s)	163
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
Sau3AI	GATC	1 cut(s)	31
SchI	GAGTC	1 cut(s)	154
ScrFI	CCNGG	1 cut(s)	165
SetI	ASST	3 cut(s)	17, 69, 101
SsiI	CCGC	1 cut(s)	43
StyD4I	CCNGG	1 cut(s)	163
StyI	CCWWGG	1 cut(s)	15
TatI	WGTACW	1 cut(s)	112
TspDTI	ATGAA	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.