Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002706

Physical Location & Seq

Genomic Coordinates Forward (+)

41608941 .. 41621636

Gene Structure 12696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG248200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGTTGTTCCCTGATGGCACACTTCACAAGTATTTCAAAGGTTCTGAGTTTCTTGTTGATTTACAAGATTATGACTATTCTTTGGACTTGTGGAGTCTTGGTTGTATGTTTCCTGGAATGATATTTCGTAAGAAGCCATTTTTTTATGGACGTGATAACTATGATCAGCTAGTGAAAATAGCAAAGGTGCGGGTGCAGGTGCAGGTGCAAGAGAAGAAAAGAGAGGCTGTGAAAGGCTGTAGGGACGAAGGAACAAACAGAAGGGAGTGGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0031974 GO:0031981 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

91

Amino Acids

10.86

Weight (kDa)

8.93

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	11 - 72	1.2e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23070
fragaria_vesca	FvH4_1g17410
malus_domestica	MD02G1183300.v1.1 MD08G1087500.v1.1 MD15G1295000.v1.1
prunus_persica	Prupe.6G222700_v2.0.a1 Prupe.6G222700_v2.0.a1
pyrus_communis	pycom02g14890 pycom02g14900
rosa_chinensis	RchiOBHm_Chr2g0107601 RchiOBHm_Chr4g0423111
rosa_laevigata	RLG00000015367 RLG00000017594 RLG00000019619 RLG00000033266
rosa_multiflora	Rmu_co8147378.1_g000001 Rmu_sc0000800.1_g000031 Rmu_sc0028958.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122390 Rroxscaffold_2G00136160 Rroxscaffold_6G00412260
rosa_rugosa	Rorug01G0255400 Rorug02G0145700 Rorug02G0145800 Rorug02G0145900
rosa_samantha	Rh2AG195200 Rh2BG207800 Rh2CG200400 Rh2CG269000 Rh2DG202800 Rh4AG035300 Rh4AG243500 Rh4BG128100 Rh4BG248200 Rh4CG032800 Rh5CG247100 Rh6AG034200 Rh7AG164100
rosa_wichuraiana	Rw2G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	187, 193
Acc36I	ACCTGC	2 cut(s)	187, 193
AciI	CCGC	1 cut(s)	190
AgsI	TTSAA	1 cut(s)	37
AjiI	CACGTC	1 cut(s)	152
AjnI	CCWGG	1 cut(s)	112
AluBI	AGCT	2 cut(s)	169, 273
AluI	AGCT	2 cut(s)	169, 273
BccI	CCATC	1 cut(s)	8
BciT130I	CCWGG	1 cut(s)	114
BclI	TGATCA	1 cut(s)	163
BfaI	CTAG	2 cut(s)	170, 274
BfmI	CTRYAG	1 cut(s)	238
BfuAI	ACCTGC	2 cut(s)	187, 193
Bme1390I	CCNGG	1 cut(s)	114
BmgBI	CACGTC	1 cut(s)	152
BmrFI	CCNGG	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	85, 115
BseBI	CCWGG	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	36
BsgI	GTGCAG	2 cut(s)	215, 221
BslFI	GGGAC	1 cut(s)	257
BsmFI	GGGAC	1 cut(s)	257
Bsp143I	GATC	1 cut(s)	163
BspACI	CCGC	1 cut(s)	190
BspCNI	CTCAG	1 cut(s)	37
BspMI	ACCTGC	2 cut(s)	187, 193
BssMI	GATC	1 cut(s)	163
Bst2UI	CCWGG	1 cut(s)	114
BstDEI	CTNAG	1 cut(s)	45
BstKTI	GATC	1 cut(s)	166
BstMBI	GATC	1 cut(s)	163
BstNI	CCWGG	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	112
BstSFI	CTRYAG	1 cut(s)	238
BtrI	CACGTC	1 cut(s)	152
BveI	ACCTGC	2 cut(s)	187, 193
CviJI	RGCY	5 cut(s)	136, 169, 227, 237, 273
CviKI_1	RGCY	5 cut(s)	136, 169, 227, 237, 273
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	112
FaiI	YATR	4 cut(s)	72, 107, 147, 162
FaqI	GGGAC	1 cut(s)	257
FauI	CCCGC	1 cut(s)	183
FbaI	TGATCA	1 cut(s)	163
FspBI	CTAG	2 cut(s)	170, 274
HinfI	GANTC	1 cut(s)	94
Hpy188I	TCNGA	1 cut(s)	46
HpyAV	CCTTC	2 cut(s)	242, 255
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	3 cut(s)	196, 202, 208
HpyF3I	CTNAG	1 cut(s)	45
HpySE526I	ACGT	1 cut(s)	151
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	163
LmnI	GCTCC	1 cut(s)	270
LpnPI	CCDG	5 cut(s)	24, 99, 126, 182, 188
MaeI	CTAG	2 cut(s)	170, 274
MaeII	ACGT	1 cut(s)	151
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	1 cut(s)	226
MlyI	GAGTC	1 cut(s)	103
MnlI	CCTC	1 cut(s)	217
MspR9I	CCNGG	1 cut(s)	114
MvaI	CCWGG	1 cut(s)	114
NdeII	GATC	1 cut(s)	163
PaqCI	CACCTGC	2 cut(s)	187, 193
PfoI	TCCNGGA	1 cut(s)	112
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
Sau3AI	GATC	1 cut(s)	163
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	1 cut(s)	114
SetI	ASST	7 cut(s)	43, 154, 171, 189, 201, 207, 275
SfcI	CTRYAG	1 cut(s)	238
SsiI	CCGC	1 cut(s)	190
SspMI	CTAG	2 cut(s)	170, 274
StyD4I	CCNGG	1 cut(s)	112
TaiI	ACGT	1 cut(s)	154
XspI	CTAG	2 cut(s)	170, 274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.