Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002706

Physical Location & Seq

Genomic Coordinates Reverse (-)

21531728 .. 21538951

Gene Structure 7224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG128100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGAGGCCGGCTGTGTTACGTGCTGCTGGGATCGGTGGCCGCTGGGATCGTTCGGCGGGGCGCCGGGTCGGGTCGAGGGCGCCCTGGTTTGTTTTTGTTCATTACCTTATGTTGTTCCCTGATGGCACACTTTGCAGGTATTTCAAAGGTTCTGAGCTTCTTGTTGATTTACAAGATTATGACTATTCTTTGGACTTGTGGAGTCTTGGTTGTATGTTTCCTGGAATGTTTTTTGCTGGTATATTATATCATCCTCAATCAACCCTGACAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0031974 GO:0031981 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

91

Amino Acids

10.37

Weight (kDa)

8.74

Isoelectric Point (pI)

63.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23070
fragaria_vesca	FvH4_1g17410
malus_domestica	MD02G1183300.v1.1 MD08G1087500.v1.1 MD15G1295000.v1.1
prunus_persica	Prupe.6G222700_v2.0.a1 Prupe.6G222700_v2.0.a1
pyrus_communis	pycom02g14890 pycom02g14900
rosa_chinensis	RchiOBHm_Chr2g0107601 RchiOBHm_Chr4g0423111
rosa_laevigata	RLG00000015367 RLG00000017594 RLG00000019619 RLG00000033266
rosa_multiflora	Rmu_co8147378.1_g000001 Rmu_sc0000800.1_g000031 Rmu_sc0028958.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122390 Rroxscaffold_2G00136160 Rroxscaffold_6G00412260
rosa_rugosa	Rorug01G0255400 Rorug02G0145700 Rorug02G0145800 Rorug02G0145900
rosa_samantha	Rh2AG195200 Rh2BG207800 Rh2CG200400 Rh2CG269000 Rh2DG202800 Rh4AG035300 Rh4AG243500 Rh4BG128100 Rh4BG248200 Rh4CG032800 Rh5CG247100 Rh6AG034200 Rh7AG164100
rosa_wichuraiana	Rw2G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	126
AccB1I	GGYRCC	2 cut(s)	60, 79
AciI	CCGC	2 cut(s)	40, 56
AclWI	GGATC	2 cut(s)	38, 54
AcoI	YGGCCR	1 cut(s)	37
AcyI	GRCGYC	2 cut(s)	61, 80
AgsI	TTSAA	1 cut(s)	145
AjnI	CCWGG	2 cut(s)	83, 220
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
AlwI	GGATC	2 cut(s)	38, 54
AoxI	GGCC	2 cut(s)	5, 37
ApeKI	GCWGC	1 cut(s)	23
AspLEI	GCGC	2 cut(s)	63, 82
AsuC2I	CCSGG	1 cut(s)	65
BanI	GGYRCC	2 cut(s)	60, 79
BbvI	GCAGC	1 cut(s)	10
BccI	CCATC	1 cut(s)	116
BciT130I	CCWGG	2 cut(s)	85, 222
BcnI	CCSGG	1 cut(s)	65
BfoI	RGCGCY	2 cut(s)	64, 83
BfuAI	ACCTGC	1 cut(s)	126
BisI	GCNGC	2 cut(s)	24, 40
BlsI	GCNGC	2 cut(s)	25, 41
Bme1390I	CCNGG	3 cut(s)	65, 85, 222
BmiI	GGNNCC	2 cut(s)	62, 81
BmrFI	CCNGG	3 cut(s)	65, 85, 222
BpuMI	CCSGG	1 cut(s)	65
BsaAI	YACGTR	1 cut(s)	20
BsaHI	GRCGYC	2 cut(s)	61, 80
BsaJI	CCNNGG	1 cut(s)	83
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bse118I	RCCGGY	1 cut(s)	7
BseBI	CCWGG	2 cut(s)	85, 222
BseDI	CCNNGG	1 cut(s)	83
BseGI	GGATG	1 cut(s)	250
BseMII	CTCAG	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	10
BseYI	CCCAGC	2 cut(s)	26, 42
BshFI	GGCC	2 cut(s)	7, 39
BshNI	GGYRCC	2 cut(s)	60, 79
BsiSI	CCGG	2 cut(s)	8, 64
BsnI	GGCC	2 cut(s)	7, 39
Bsp143I	GATC	2 cut(s)	30, 46
BspACI	CCGC	2 cut(s)	40, 56
BspANI	GGCC	2 cut(s)	7, 39
BspCNI	CTCAG	1 cut(s)	145
BspLI	GGNNCC	2 cut(s)	62, 81
BspMI	ACCTGC	1 cut(s)	126
BspPI	GGATC	2 cut(s)	38, 54
BspT107I	GGYRCC	2 cut(s)	60, 79
BsrFI	RCCGGY	1 cut(s)	7
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	1 cut(s)	83
BssMI	GATC	2 cut(s)	30, 46
BssNI	GRCGYC	2 cut(s)	61, 80
Bst2UI	CCWGG	2 cut(s)	85, 222
Bst4CI	ACNGT	1 cut(s)	271
BstACI	GRCGYC	2 cut(s)	61, 80
BstAPI	GCANNNNNTGC	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	250
BstH2I	RGCGCY	2 cut(s)	64, 83
BstHHI	GCGC	2 cut(s)	63, 82
BstKTI	GATC	2 cut(s)	33, 49
BstMBI	GATC	2 cut(s)	30, 46
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstNI	CCWGG	2 cut(s)	85, 222
BstSCI	CCNGG	3 cut(s)	63, 83, 220
BstV1I	GCAGC	1 cut(s)	10
BsuRI	GGCC	2 cut(s)	7, 39
BtsCI	GGATG	1 cut(s)	250
BveI	ACCTGC	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	9
CfoI	GCGC	2 cut(s)	63, 82
Cfr10I	RCCGGY	1 cut(s)	7
CviJI	RGCY	4 cut(s)	7, 11, 39, 157
CviKI_1	RGCY	4 cut(s)	7, 11, 39, 157
DdeI	CTNAG	1 cut(s)	153
DinI	GGCGCC	2 cut(s)	62, 81
DpnI	GATC	2 cut(s)	32, 48
DpnII	GATC	2 cut(s)	30, 46
EaeI	YGGCCR	1 cut(s)	37
EcoRII	CCWGG	2 cut(s)	83, 220
EgeI	GGCGCC	2 cut(s)	62, 81
EheI	GGCGCC	2 cut(s)	62, 81
FaiI	YATR	6 cut(s)	110, 180, 215, 242, 247, 274
FauI	CCCGC	1 cut(s)	49
Fnu4HI	GCNGC	2 cut(s)	24, 40
FokI	GGATG	1 cut(s)	237
Fsp4HI	GCNGC	2 cut(s)	24, 40
GlaI	GCGC	2 cut(s)	62, 81
GluI	GCNGC	2 cut(s)	24, 40
GsaI	CCCAGC	2 cut(s)	30, 46
HaeII	RGCGCY	2 cut(s)	64, 83
HaeIII	GGCC	2 cut(s)	7, 39
HapII	CCGG	2 cut(s)	8, 64
HhaI	GCGC	2 cut(s)	63, 82
Hin1I	GRCGYC	2 cut(s)	61, 80
Hin6I	GCGC	2 cut(s)	61, 80
HinP1I	GCGC	2 cut(s)	61, 80
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	2 cut(s)	8, 64
Hpy188I	TCNGA	1 cut(s)	154
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	19
Hsp92I	GRCGYC	2 cut(s)	61, 80
HspAI	GCGC	2 cut(s)	61, 80
KasI	GGCGCC	2 cut(s)	60, 79
KroI	GCCGGC	1 cut(s)	7
KroNI	GCCGGC	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	30, 46
Lsp1109I	GCAGC	1 cut(s)	10
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	2 cut(s)	32, 48
MboI	GATC	2 cut(s)	30, 46
Mly113I	GGCGCC	2 cut(s)	61, 80
MlyI	GAGTC	1 cut(s)	211
MnlI	CCTC	2 cut(s)	69, 264
MroNI	GCCGGC	1 cut(s)	7
MspA1I	CMGCKG	1 cut(s)	42
MspI	CCGG	2 cut(s)	8, 64
MspR9I	CCNGG	3 cut(s)	65, 85, 222
MvaI	CCWGG	2 cut(s)	85, 222
MwoI	GCNNNNNNNGC	1 cut(s)	132
NaeI	GCCGGC	1 cut(s)	9
NarI	GGCGCC	2 cut(s)	61, 80
NciI	CCSGG	1 cut(s)	65
NdeII	GATC	2 cut(s)	30, 46
NgoMIV	GCCGGC	1 cut(s)	7
NlaIV	GGNNCC	2 cut(s)	62, 81
PdiI	GCCGGC	1 cut(s)	9
PfoI	TCCNGGA	1 cut(s)	220
PkrI	GCNGC	2 cut(s)	25, 41
PleI	GAGTC	1 cut(s)	210
PluTI	GGCGCC	2 cut(s)	64, 83
PpsI	GAGTC	1 cut(s)	210
Ppu21I	YACGTR	1 cut(s)	20
Psp6I	CCWGG	2 cut(s)	83, 220
PspFI	CCCAGC	2 cut(s)	26, 42
PspGI	CCWGG	2 cut(s)	83, 220
PspN4I	GGNNCC	2 cut(s)	62, 81
SatI	GCNGC	2 cut(s)	24, 40
Sau3AI	GATC	2 cut(s)	30, 46
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	3 cut(s)	65, 85, 222
SetI	ASST	5 cut(s)	22, 108, 140, 151, 159
SfoI	GGCGCC	2 cut(s)	62, 81
SsiI	CCGC	2 cut(s)	40, 56
SspDI	GGCGCC	2 cut(s)	60, 79
StyD4I	CCNGG	3 cut(s)	63, 83, 220
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	1 cut(s)	74
TauI	GCSGC	1 cut(s)	42
TseI	GCWGC	1 cut(s)	23
TspDTI	ATGAA	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.