Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002706

Physical Location & Seq

Genomic Coordinates Reverse (-)

12818873 .. 12819631

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0145800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCCGTCACTGCTCAAACCAAAAGACCCGCCCATACACCTTATTCCGCTCTCCCCTCTCGCCATACCCCAACCGTTAACAAATCGCCTCGTTGGCTCGACTTCCTCATTCTCTCTGCCGGTTTGCTTCTTTTCCTTGAGCTGATCGTCGTTGTTGGGCACAGAGCTATTGACAATAGGGTCGAGAAGGCGATTCAGAAGGACGCGGCGGACAGGCTCGCACGGGCGGACGCCGCGGCTAGTTGGGGTGCCACCGTTGTGGACCATTCTGAGCCTCATTATGAGAGTGACTGGCCATGGCTTGGCTGGTGGAGTACGTGGTGGAATGGGGTTCACCATAAAGCCTGTCAGATGTCGAGCCCTAGTTTCGGAGATCGGCCGCGGTGTTTTCCATTGAAAGGGAGGAGTGGCTATGTTGTGCACAAGCTAAGGGAGCCTATTGTGCCGGAGACTATTACTATTGATTGTATTGAACATATTGAGGATTATGTTGTTGATGACCGGTCCGATGCTCCCATGAATTGCCGTGTCACTGGTTGGTTGACCGATAGCGAGAAGAGTGAGTTTGTTTTGGCCGAGTTCAGTTACGACGTTGGGAAGGGCAGTGTTCAGACGTTTGGTGTGTCGGGATCGGTGGCGAAGGCCGGTGATGGGGCCGTTGTTAACATGGTGGAGTTGCAGTTTGCATACAACCATGGAAGCCCGGAGTCTACTTGCATATATCGGCTCAGAGTTCATGGCCATAAACCTCGATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0031974 GO:0031981 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

252

Amino Acids

28.11

Weight (kDa)

6.63

Isoelectric Point (pI)

49.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sad1_UNC	PF07738	113 - 248	2e-25	Sad1 / UNC-like C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23070
fragaria_vesca	FvH4_1g17410
malus_domestica	MD02G1183300.v1.1 MD08G1087500.v1.1 MD15G1295000.v1.1
prunus_persica	Prupe.6G222700_v2.0.a1 Prupe.6G222700_v2.0.a1
pyrus_communis	pycom02g14890 pycom02g14900
rosa_chinensis	RchiOBHm_Chr2g0107601 RchiOBHm_Chr4g0423111
rosa_laevigata	RLG00000015367 RLG00000017594 RLG00000019619 RLG00000033266
rosa_multiflora	Rmu_co8147378.1_g000001 Rmu_sc0000800.1_g000031 Rmu_sc0028958.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122390 Rroxscaffold_2G00136160 Rroxscaffold_6G00412260
rosa_rugosa	Rorug01G0255400 Rorug02G0145700 Rorug02G0145800 Rorug02G0145900
rosa_samantha	Rh2AG195200 Rh2BG207800 Rh2CG200400 Rh2CG269000 Rh2DG202800 Rh4AG035300 Rh4AG243500 Rh4BG128100 Rh4BG248200 Rh4CG032800 Rh5CG247100 Rh6AG034200 Rh7AG164100
rosa_wichuraiana	Rw2G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AccB1I	GGYRCC	1 cut(s)	248
AccB7I	CCANNNNNTGG	1 cut(s)	302
AccBSI	CCGCTC	1 cut(s)	50
AccI	GTMKAC	1 cut(s)	710
AccII	CGCG	3 cut(s)	206, 236, 382
AciI	CCGC	9 cut(s)	30, 48, 206, 209, 227, 234, 236, 380, 382
AclWI	GGATC	1 cut(s)	637
AcoI	YGGCCR	5 cut(s)	3, 293, 377, 573, 739
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	1 cut(s)	316
AfiI	CCNNNNNNNGG	4 cut(s)	302, 368, 398, 651
AgeI	ACCGGT	1 cut(s)	501
AgsI	TTSAA	2 cut(s)	397, 473
AleI	CACNNNNGTG	1 cut(s)	257
AluBI	AGCT	3 cut(s)	142, 167, 427
AluI	AGCT	3 cut(s)	142, 167, 427
Alw21I	GWGCWC	1 cut(s)	423
Alw26I	GTCTC	1 cut(s)	443
Alw44I	GTGCAC	1 cut(s)	419
AlwI	GGATC	1 cut(s)	637
AoxI	GGCC	7 cut(s)	3, 293, 377, 573, 642, 654, 739
ApaLI	GTGCAC	1 cut(s)	419
AsiGI	ACCGGT	1 cut(s)	501
AspS9I	GGNCC	3 cut(s)	262, 504, 654
AsuC2I	CCSGG	1 cut(s)	704
AsuHPI	GGTGA	2 cut(s)	326, 659
AvaII	GGWCC	2 cut(s)	262, 504
BaeGI	GKGCMC	2 cut(s)	162, 423
BalI	TGGCCA	2 cut(s)	295, 741
BanI	GGYRCC	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	362
Bbv12I	GWGCWC	1 cut(s)	423
BccI	CCATC	1 cut(s)	644
BceAI	ACGGC	2 cut(s)	510, 641
BcnI	CCSGG	1 cut(s)	704
BcoDI	GTCTC	1 cut(s)	443
BfaI	CTAG	2 cut(s)	240, 363
BglI	GCCNNNNNGGC	1 cut(s)	94
BisI	GCNGC	4 cut(s)	207, 234, 237, 380
BlsI	GCNGC	4 cut(s)	208, 235, 238, 381
Bme1390I	CCNGG	1 cut(s)	704
Bme18I	GGWCC	2 cut(s)	262, 504
BmgT120I	GGNCC	3 cut(s)	262, 504, 654
BmiI	GGNNCC	3 cut(s)	250, 435, 655
BmrFI	CCNGG	1 cut(s)	704
BmsI	GCATC	1 cut(s)	499
Bpu10I	CCTNAGC	1 cut(s)	428
BpuEI	CTTGAG	1 cut(s)	158
BpuMI	CCSGG	1 cut(s)	704
BsaAI	YACGTR	1 cut(s)	318
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	4 cut(s)	234, 296, 380, 694
BsaWI	WCCGGW	1 cut(s)	501
BsaXI	ACNNNNNCTCC	2 cut(s)	665, 695
Bsc4I	CCNNNNNNNGG	4 cut(s)	302, 368, 398, 651
Bse118I	RCCGGY	3 cut(s)	119, 501, 644
Bse1I	ACTGG	2 cut(s)	296, 538
BseDI	CCNNGG	4 cut(s)	234, 296, 380, 694
BseLI	CCNNNNNNNGG	4 cut(s)	302, 368, 398, 651
BseMII	CTCAG	2 cut(s)	261, 742
BseNI	ACTGG	2 cut(s)	296, 538
BseRI	GAGGAG	1 cut(s)	418
BseSI	GKGCMC	2 cut(s)	162, 423
BseX3I	CGGCCG	1 cut(s)	377
Bsh1236I	CGCG	3 cut(s)	206, 236, 382
Bsh1285I	CGRYCG	2 cut(s)	380, 755
BshFI	GGCC	7 cut(s)	5, 295, 379, 575, 644, 656, 741
BshNI	GGYRCC	1 cut(s)	248
BshTI	ACCGGT	1 cut(s)	501
BsiEI	CGRYCG	2 cut(s)	380, 755
BsiHKAI	GWGCWC	1 cut(s)	423
BsiSI	CCGG	5 cut(s)	120, 446, 502, 645, 704
BslI	CCNNNNNNNGG	4 cut(s)	302, 368, 398, 651
BsmAI	GTCTC	1 cut(s)	443
BsnI	GGCC	7 cut(s)	5, 295, 379, 575, 644, 656, 741
Bsp1286I	GDGCHC	3 cut(s)	162, 362, 423
Bsp143I	GATC	4 cut(s)	144, 373, 629, 752
Bsp19I	CCATGG	2 cut(s)	296, 694
BspACI	CCGC	9 cut(s)	30, 48, 206, 209, 227, 234, 236, 380, 382
BspANI	GGCC	7 cut(s)	5, 295, 379, 575, 644, 656, 741
BspCNI	CTCAG	2 cut(s)	262, 741
BspFNI	CGCG	3 cut(s)	206, 236, 382
BspLI	GGNNCC	3 cut(s)	250, 435, 655
BspPI	GGATC	1 cut(s)	637
BspT107I	GGYRCC	1 cut(s)	248
BsrBI	CCGCTC	1 cut(s)	50
BsrFI	RCCGGY	3 cut(s)	119, 501, 644
BsrI	ACTGG	2 cut(s)	296, 538
BssAI	RCCGGY	3 cut(s)	119, 501, 644
BssECI	CCNNGG	4 cut(s)	234, 296, 380, 694
BssMI	GATC	4 cut(s)	144, 373, 629, 752
BssNI	GRCGYC	1 cut(s)	231
BssT1I	CCWWGG	2 cut(s)	296, 694
Bst4CI	ACNGT	2 cut(s)	76, 256
Bst6I	CTCTTC	1 cut(s)	551
BstACI	GRCGYC	1 cut(s)	231
BstBAI	YACGTR	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	3 cut(s)	270, 428, 728
BstDSI	CCRYGG	4 cut(s)	234, 296, 380, 694
BstFNI	CGCG	3 cut(s)	206, 236, 382
BstKTI	GATC	4 cut(s)	147, 376, 632, 755
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	4 cut(s)	144, 373, 629, 752
BstMCI	CGRYCG	2 cut(s)	380, 755
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 94, 233, 433, 442
BstSCI	CCNGG	1 cut(s)	702
BstSLI	GKGCMC	2 cut(s)	162, 423
BstUI	CGCG	3 cut(s)	206, 236, 382
BstXI	CCANNNNNNTGG	1 cut(s)	259
BstZI	CGGCCG	1 cut(s)	377
BsuRI	GGCC	7 cut(s)	5, 295, 379, 575, 644, 656, 741
BtgI	CCRYGG	4 cut(s)	234, 296, 380, 694
BtsI	GCAGTG	2 cut(s)	9, 610
BtsIMutI	CAGTG	3 cut(s)	9, 531, 610
Cac8I	GCNNGC	1 cut(s)	219
Cfr10I	RCCGGY	3 cut(s)	119, 501, 644
Cfr13I	GGNCC	3 cut(s)	262, 504, 654
Cfr42I	CCGCGG	2 cut(s)	237, 383
CpoI	CGGWCCG	1 cut(s)	504
CseI	GACGC	2 cut(s)	212, 239
Csp6I	GTAC	1 cut(s)	315
CspAI	ACCGGT	1 cut(s)	501
CspI	CGGWCCG	1 cut(s)	504
CviAII	CATG	5 cut(s)	297, 517, 667, 695, 737
CviQI	GTAC	1 cut(s)	315
DdeI	CTNAG	3 cut(s)	270, 428, 728
DpnI	GATC	4 cut(s)	146, 375, 631, 754
DpnII	GATC	4 cut(s)	144, 373, 629, 752
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
EaeI	YGGCCR	5 cut(s)	3, 293, 377, 573, 739
EagI	CGGCCG	1 cut(s)	377
Eam1104I	CTCTTC	1 cut(s)	551
EarI	CTCTTC	1 cut(s)	551
EciI	GGCGGA	2 cut(s)	224, 242
EclXI	CGGCCG	1 cut(s)	377
Eco130I	CCWWGG	2 cut(s)	296, 694
Eco24I	GRGCYC	1 cut(s)	362
Eco47I	GGWCC	2 cut(s)	262, 504
Eco52I	CGGCCG	1 cut(s)	377
EcoT14I	CCWWGG	2 cut(s)	296, 694
EcoT38I	GRGCYC	1 cut(s)	362
ErhI	CCWWGG	2 cut(s)	296, 694
FaeI	CATG	5 cut(s)	300, 520, 670, 698, 740
FatI	CATG	5 cut(s)	296, 516, 666, 694, 736
FauI	CCCGC	1 cut(s)	37
FblI	GTMKAC	1 cut(s)	710
Fnu4HI	GCNGC	4 cut(s)	207, 234, 237, 380
FriOI	GRGCYC	1 cut(s)	362
Fsp4HI	GCNGC	4 cut(s)	207, 234, 237, 380
FspBI	CTAG	2 cut(s)	240, 363
GluI	GCNGC	4 cut(s)	207, 234, 237, 380
HaeIII	GGCC	7 cut(s)	5, 295, 379, 575, 644, 656, 741
HapII	CCGG	5 cut(s)	120, 446, 502, 645, 704
HgaI	GACGC	2 cut(s)	212, 239
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	5 cut(s)	300, 520, 670, 698, 740
HincII	GTYRAC	3 cut(s)	79, 543, 664
HindII	GTYRAC	3 cut(s)	79, 543, 664
HinfI	GANTC	2 cut(s)	193, 707
HpaI	GTTAAC	2 cut(s)	79, 664
HpaII	CCGG	5 cut(s)	120, 446, 502, 645, 704
HphI	GGTGA	2 cut(s)	326, 659
Hpy166II	GTNNAC	7 cut(s)	79, 262, 334, 421, 543, 664, 711
Hpy188I	TCNGA	7 cut(s)	198, 271, 351, 371, 508, 612, 731
Hpy188III	TCNNGA	2 cut(s)	184, 627
Hpy8I	GTNNAC	7 cut(s)	79, 262, 334, 421, 543, 664, 711
Hpy99I	CGWCG	2 cut(s)	152, 593
HpyAV	CCTTC	4 cut(s)	181, 193, 592, 634
HpyCH4III	ACNGT	2 cut(s)	76, 256
HpyCH4IV	ACGT	3 cut(s)	317, 591, 614
HpyCH4V	TGCA	4 cut(s)	421, 679, 686, 717
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 94, 233, 433, 442
HpyF3I	CTNAG	3 cut(s)	270, 428, 728
HpySE526I	ACGT	3 cut(s)	317, 591, 614
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	5 cut(s)	300, 520, 670, 698, 740
KspAI	GTTAAC	2 cut(s)	79, 664
KspI	CCGCGG	2 cut(s)	237, 383
Kzo9I	GATC	4 cut(s)	144, 373, 629, 752
LmnI	GCTCC	2 cut(s)	433, 517
LweI	GCATC	1 cut(s)	499
MaeI	CTAG	2 cut(s)	240, 363
MaeII	ACGT	3 cut(s)	317, 591, 614
MaeIII	GTNAC	4 cut(s)	7, 287, 529, 584
MalI	GATC	4 cut(s)	146, 375, 631, 754
MbiI	CCGCTC	1 cut(s)	50
MboI	GATC	4 cut(s)	144, 373, 629, 752
MboII	GAAGA	1 cut(s)	568
MhlI	GDGCHC	3 cut(s)	162, 362, 423
MlsI	TGGCCA	2 cut(s)	295, 741
MluCI	AATT	1 cut(s)	520
MluNI	TGGCCA	2 cut(s)	295, 741
MlyI	GAGTC	1 cut(s)	716
MnlI	CCTC	7 cut(s)	67, 99, 116, 285, 396, 475, 759
Mox20I	TGGCCA	2 cut(s)	295, 741
MscI	TGGCCA	2 cut(s)	295, 741
MseI	TTAA	2 cut(s)	78, 663
MslI	CAYNNNNRTG	1 cut(s)	257
Msp20I	TGGCCA	2 cut(s)	295, 741
MspA1I	CMGCKG	2 cut(s)	236, 382
MspI	CCGG	5 cut(s)	120, 446, 502, 645, 704
MspR9I	CCNGG	1 cut(s)	704
MvnI	CGCG	3 cut(s)	206, 236, 382
MwoI	GCNNNNNNNGC	5 cut(s)	11, 94, 233, 433, 442
NciI	CCSGG	1 cut(s)	704
NcoI	CCATGG	2 cut(s)	296, 694
NdeII	GATC	4 cut(s)	144, 373, 629, 752
NlaIII	CATG	5 cut(s)	300, 520, 670, 698, 740
NlaIV	GGNNCC	3 cut(s)	250, 435, 655
NmeAIII	GCCGAG	1 cut(s)	601
NmuCI	GTSAC	3 cut(s)	7, 287, 529
OliI	CACNNNNGTG	1 cut(s)	257
PfeI	GAWTC	1 cut(s)	193
PflMI	CCANNNNNTGG	1 cut(s)	302
PinAI	ACCGGT	1 cut(s)	501
PkrI	GCNGC	4 cut(s)	208, 235, 238, 381
Ple19I	CGATCG	1 cut(s)	755
PleI	GAGTC	1 cut(s)	715
PpsI	GAGTC	1 cut(s)	715
Ppu21I	YACGTR	1 cut(s)	318
PspN4I	GGNNCC	3 cut(s)	250, 435, 655
PspPI	GGNCC	3 cut(s)	262, 504, 654
PvuI	CGATCG	1 cut(s)	755
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
RseI	CAYNNNNRTG	1 cut(s)	257
Rsr2I	CGGWCCG	1 cut(s)	504
RsrII	CGGWCCG	1 cut(s)	504
SacII	CCGCGG	2 cut(s)	237, 383
SaqAI	TTAA	2 cut(s)	78, 663
SatI	GCNGC	4 cut(s)	207, 234, 237, 380
Sau3AI	GATC	4 cut(s)	144, 373, 629, 752
Sau96I	GGNCC	3 cut(s)	262, 504, 654
SchI	GAGTC	1 cut(s)	716
ScrFI	CCNGG	1 cut(s)	704
SduI	GDGCHC	3 cut(s)	162, 362, 423
SetI	ASST	8 cut(s)	43, 144, 169, 320, 429, 594, 617, 751
SfaNI	GCATC	1 cut(s)	499
Sfr303I	CCGCGG	2 cut(s)	237, 383
SgrBI	CCGCGG	2 cut(s)	237, 383
SinI	GGWCC	2 cut(s)	262, 504
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	1 cut(s)	520
SsiI	CCGC	9 cut(s)	30, 48, 206, 209, 227, 234, 236, 380, 382
SspMI	CTAG	2 cut(s)	240, 363
StyD4I	CCNGG	1 cut(s)	702
StyI	CCWWGG	2 cut(s)	296, 694
TaaI	ACNGT	2 cut(s)	76, 256
TaiI	ACGT	3 cut(s)	320, 594, 617
TaqI	TCGA	4 cut(s)	99, 183, 356, 751
TaqII	GACCGA	1 cut(s)	560
TasI	AATT	1 cut(s)	520
TauI	GCSGC	4 cut(s)	209, 236, 239, 382
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	2 cut(s)	78, 663
Tru9I	TTAA	2 cut(s)	78, 663
TscAI	CASTG	3 cut(s)	16, 538, 610
TseFI	GTSAC	3 cut(s)	7, 287, 529
Tsp45I	GTSAC	3 cut(s)	7, 287, 529
TspDTI	ATGAA	2 cut(s)	533, 725
TspRI	CASTG	3 cut(s)	16, 538, 610
Van91I	CCANNNNNTGG	1 cut(s)	302
VneI	GTGCAC	1 cut(s)	419
VpaK11BI	GGWCC	2 cut(s)	262, 504
XcmI	CCANNNNNNNNNTGG	1 cut(s)	303
XmiI	GTMKAC	1 cut(s)	710
XspI	CTAG	2 cut(s)	240, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.