Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002706

Physical Location & Seq

Genomic Coordinates Forward (+)

11559098 .. 11562020

Gene Structure 2923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g14900.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTTAGGGTTGCTTCAAGAGGAGTATTTCAAAGGTCCTGAGCTTCTTGTTGATTTGCAAGATTATGATTATTCTTTAGATTTGTGGAGTCTCGGTTGTATGTTTGCTGGAATGATCGTAAGGAGCCATTCTTCTATGGGCATGATAACTATCGATCAGCTAGTCAAAATAGCAAAGGTGCTTGGGACAGATGAATTAAACGCTTATCTGCACAAGTACCGCATAGAATTAGACCCACACCTTGCAGCTCTAGTTGGGAGGCATAGCAGGAAACCATGGACAAAATTCATTAATGTTGATAATCAGCACTTAGCGGTTCCTGAGGCGCTTGACTTTGTAGACAAGTTGTTGCACTATGATCACCAGGAAAGACCAACTGCAAAAGAAGCAATGGCCCATCCTTATTTCTACCCGATCAGAAATGCAGAAAGCAGCAGAACTCGCACCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0031974 GO:0031981 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

151

Amino Acids

17.36

Weight (kDa)

6.03

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23070
fragaria_vesca	FvH4_1g17410
malus_domestica	MD02G1183300.v1.1 MD08G1087500.v1.1 MD15G1295000.v1.1
prunus_persica	Prupe.6G222700_v2.0.a1 Prupe.6G222700_v2.0.a1
pyrus_communis	pycom02g14890 pycom02g14900
rosa_chinensis	RchiOBHm_Chr2g0107601 RchiOBHm_Chr4g0423111
rosa_laevigata	RLG00000015367 RLG00000017594 RLG00000019619 RLG00000033266
rosa_multiflora	Rmu_co8147378.1_g000001 Rmu_sc0000800.1_g000031 Rmu_sc0028958.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122390 Rroxscaffold_2G00136160 Rroxscaffold_6G00412260
rosa_rugosa	Rorug01G0255400 Rorug02G0145700 Rorug02G0145800 Rorug02G0145900
rosa_samantha	Rh2AG195200 Rh2BG207800 Rh2CG200400 Rh2CG269000 Rh2DG202800 Rh4AG035300 Rh4AG243500 Rh4BG128100 Rh4BG248200 Rh4CG032800 Rh5CG247100 Rh6AG034200 Rh7AG164100
rosa_wichuraiana	Rw2G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	339
AciI	CCGC	2 cut(s)	220, 314
AcsI	RAATTY	1 cut(s)	284
AfaI	GTAC	1 cut(s)	218
AgsI	TTSAA	2 cut(s)	17, 31
AjnI	CCWGG	1 cut(s)	363
AluBI	AGCT	3 cut(s)	43, 160, 248
AluI	AGCT	3 cut(s)	43, 160, 248
Alw26I	GTCTC	1 cut(s)	95
AoxI	GGCC	1 cut(s)	393
ApeKI	GCWGC	2 cut(s)	245, 432
ApoI	RAATTY	1 cut(s)	284
AseI	ATTAAT	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	328
AspS9I	GGNCC	2 cut(s)	35, 394
AsuHPI	GGTGA	1 cut(s)	353
AvaII	GGWCC	1 cut(s)	35
AxyI	CCTNAGG	1 cut(s)	321
BbvI	GCAGC	2 cut(s)	257, 444
BccI	CCATC	1 cut(s)	405
BciT130I	CCWGG	1 cut(s)	365
BclI	TGATCA	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	2 cut(s)	161, 251
BfoI	RGCGCY	1 cut(s)	329
BisI	GCNGC	2 cut(s)	246, 433
BlsI	GCNGC	2 cut(s)	247, 434
Bme1390I	CCNGG	1 cut(s)	365
Bme18I	GGWCC	1 cut(s)	35
BmgT120I	GGNCC	2 cut(s)	35, 394
BmiI	GGNNCC	2 cut(s)	125, 318
BmrFI	CCNGG	1 cut(s)	365
BmrI	ACTGGG	1 cut(s)	442
BmuI	ACTGGG	1 cut(s)	442
Bpu10I	CCTNAGC	1 cut(s)	39
Bsa29I	ATCGAT	1 cut(s)	153
BsaBI	GATNNNNATC	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	275
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bse1I	ACTGG	1 cut(s)	448
Bse21I	CCTNAGG	1 cut(s)	321
Bse3DI	GCAATG	1 cut(s)	396
Bse8I	GATNNNNATC	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	365
BseCI	ATCGAT	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	275
BseGI	GGATG	1 cut(s)	397
BseJI	GATNNNNATC	1 cut(s)	149
BseMI	GCAATG	1 cut(s)	396
BseMII	CTCAG	2 cut(s)	30, 312
BseNI	ACTGG	1 cut(s)	448
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	2 cut(s)	257, 444
BsgI	GTGCAG	1 cut(s)	194
BshFI	GGCC	1 cut(s)	395
BshVI	ATCGAT	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	199
BsmAI	GTCTC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	395
Bsp143I	GATC	4 cut(s)	114, 154, 358, 414
Bsp19I	CCATGG	1 cut(s)	275
BspACI	CCGC	2 cut(s)	220, 314
BspANI	GGCC	1 cut(s)	395
BspCNI	CTCAG	2 cut(s)	31, 313
BspDI	ATCGAT	1 cut(s)	153
BspLI	GGNNCC	2 cut(s)	125, 318
BsrDI	GCAATG	1 cut(s)	396
BsrI	ACTGG	1 cut(s)	448
BssECI	CCNNGG	1 cut(s)	275
BssMI	GATC	4 cut(s)	114, 154, 358, 414
BssT1I	CCWWGG	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	365
BstDEI	CTNAG	3 cut(s)	39, 310, 321
BstDSI	CCRYGG	1 cut(s)	275
BstF5I	GGATG	1 cut(s)	397
BstH2I	RGCGCY	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	4 cut(s)	117, 157, 361, 417
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	4 cut(s)	114, 154, 358, 414
BstMWI	GCNNNNNNNGC	2 cut(s)	386, 441
BstNI	CCWGG	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	363
BstV1I	GCAGC	2 cut(s)	257, 444
Bsu15I	ATCGAT	1 cut(s)	153
Bsu36I	CCTNAGG	1 cut(s)	321
BsuRI	GGCC	1 cut(s)	395
BsuTUI	ATCGAT	1 cut(s)	153
BtgI	CCRYGG	1 cut(s)	275
BtsCI	GGATG	1 cut(s)	397
CfoI	GCGC	1 cut(s)	328
Cfr13I	GGNCC	2 cut(s)	35, 394
ClaI	ATCGAT	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	2 cut(s)	142, 276
CviJI	RGCY	5 cut(s)	43, 126, 160, 248, 395
CviKI_1	RGCY	5 cut(s)	43, 126, 160, 248, 395
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	3 cut(s)	39, 310, 321
DpnI	GATC	4 cut(s)	116, 156, 360, 416
DpnII	GATC	4 cut(s)	114, 154, 358, 414
Eco130I	CCWWGG	1 cut(s)	275
Eco47I	GGWCC	1 cut(s)	35
Eco81I	CCTNAGG	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	363
EcoT14I	CCWWGG	1 cut(s)	275
ErhI	CCWWGG	1 cut(s)	275
FaeI	CATG	2 cut(s)	145, 279
FaiI	YATR	8 cut(s)	66, 101, 137, 143, 224, 264, 277, 357
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	2 cut(s)	141, 275
FbaI	TGATCA	1 cut(s)	358
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	2 cut(s)	246, 433
FokI	GGATG	1 cut(s)	384
Fsp4HI	GCNGC	2 cut(s)	246, 433
FspBI	CTAG	2 cut(s)	161, 251
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	2 cut(s)	246, 433
HaeII	RGCGCY	1 cut(s)	329
HaeIII	GGCC	1 cut(s)	395
HhaI	GCGC	1 cut(s)	328
Hin1II	CATG	2 cut(s)	145, 279
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HinfI	GANTC	1 cut(s)	88
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	1 cut(s)	419
Hpy188III	TCNNGA	3 cut(s)	17, 38, 320
Hpy8I	GTNNAC	1 cut(s)	340
HpyCH4V	TGCA	6 cut(s)	58, 211, 245, 352, 380, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	386, 441
HpyF3I	CTNAG	3 cut(s)	39, 310, 321
Hsp92II	CATG	2 cut(s)	145, 279
HspAI	GCGC	1 cut(s)	326
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	4 cut(s)	114, 154, 358, 414
LmnI	GCTCC	1 cut(s)	123
LpnPI	CCDG	6 cut(s)	51, 93, 253, 333, 350, 377
Lsp1109I	GCAGC	2 cut(s)	257, 444
MaeI	CTAG	2 cut(s)	161, 251
MalI	GATC	4 cut(s)	116, 156, 360, 416
MboI	GATC	4 cut(s)	114, 154, 358, 414
MboII	GAAGA	1 cut(s)	123
MluCI	AATT	3 cut(s)	194, 227, 284
MlyI	GAGTC	1 cut(s)	97
MnlI	CCTC	3 cut(s)	13, 252, 316
MseI	TTAA	2 cut(s)	197, 291
MspR9I	CCNGG	1 cut(s)	365
MvaI	CCWGG	1 cut(s)	365
MwoI	GCNNNNNNNGC	2 cut(s)	386, 441
NcoI	CCATGG	1 cut(s)	275
NdeII	GATC	4 cut(s)	114, 154, 358, 414
NlaIII	CATG	2 cut(s)	145, 279
NlaIV	GGNNCC	2 cut(s)	125, 318
PkrI	GCNGC	2 cut(s)	247, 434
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
PpuMI	RGGWCCY	1 cut(s)	35
PshBI	ATTAAT	1 cut(s)	291
Psp5II	RGGWCCY	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	363
PspGI	CCWGG	1 cut(s)	363
PspN4I	GGNNCC	2 cut(s)	125, 318
PspPI	GGNCC	2 cut(s)	35, 394
PspPPI	RGGWCCY	1 cut(s)	35
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SaqAI	TTAA	2 cut(s)	197, 291
SatI	GCNGC	2 cut(s)	246, 433
Sau3AI	GATC	4 cut(s)	114, 154, 358, 414
Sau96I	GGNCC	2 cut(s)	35, 394
SchI	GAGTC	1 cut(s)	97
ScrFI	CCNGG	1 cut(s)	365
SetI	ASST	6 cut(s)	37, 45, 162, 180, 243, 250
SinI	GGWCC	1 cut(s)	35
Sse9I	AATT	3 cut(s)	194, 227, 284
SsiI	CCGC	2 cut(s)	220, 314
SspMI	CTAG	2 cut(s)	161, 251
StyD4I	CCNGG	1 cut(s)	363
StyI	CCWWGG	1 cut(s)	275
TaqI	TCGA	1 cut(s)	153
TasI	AATT	3 cut(s)	194, 227, 284
Tru1I	TTAA	2 cut(s)	197, 291
Tru9I	TTAA	2 cut(s)	197, 291
TseI	GCWGC	2 cut(s)	245, 432
TspDTI	ATGAA	2 cut(s)	207, 277
VpaK11BI	GGWCC	1 cut(s)	35
VspI	ATTAAT	1 cut(s)	291
XapI	RAATTY	1 cut(s)	284
XmiI	GTMKAC	1 cut(s)	339
XspI	CTAG	2 cut(s)	161, 251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.