Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002706

Physical Location & Seq

Genomic Coordinates Forward (+)

19386536 .. 19395098

Gene Structure 8563 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG195200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGCCTCTTCGTGATATAATAACGAGACAAGAAACATATAACGAGAAATGTATCATCAAGATTCTCAAACCTGTTAAAAAGAAGAAGATTAAGAGGGAGATTAAAATATTGCAAAATCTTTGTGGAGGCCCGAATATTGTGAAGTTGCTTGATATCGTCAGAGACCAGCAATCAAAGACGCCAAGTCTTATTTTTGAATATGTGAATAATACAGATTTTAAAGTTCTGTATCCAACACTTTCAGACTATGACATACGATACTACATCTATGAACTTCTCAAGGCTTTGGATTATTGCCACTCGCAAGGTATTATGCATCGAGATGTGAAACCCCATAATGTTATGATTGATCATGAGCAGCGTAAGCTTCGCCTTATAGATTGGGGCCTTGCAGAGTTCTACCATCCTGAGAAAGAATATAATGTTCGGGTTGCTTCAAGGTATTTCAAAGGTCCTGAGCTTCTTGTCGATTTACAAGATTATGACTATTCTTTGGACTTGTGGAGTCTCGGTTGTATGTTTGCTGGAATGATATTTCGTAAGGAGCCATTCTTCTATGGACATGATAACTACGATCAGCTAGTGAAAATAGCAAAGGTGCGCATACGCGCCATCGATTTTGTAGACAAGTTGCTTCGTTATGATCACCAGGAAAGGCCAACTGCAAAAGAAGCAATGGCCCATCCTTACTTCTACCCAATTAGAAATGCAGAAAGCAGCAGAACTCGCACCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0031974 GO:0031981 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

245

Amino Acids

29.34

Weight (kDa)

9.04

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	10 - 192	2.2e-16	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	11 - 231	1.6e-54	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23070
fragaria_vesca	FvH4_1g17410
malus_domestica	MD02G1183300.v1.1 MD08G1087500.v1.1 MD15G1295000.v1.1
prunus_persica	Prupe.6G222700_v2.0.a1 Prupe.6G222700_v2.0.a1
pyrus_communis	pycom02g14890 pycom02g14900
rosa_chinensis	RchiOBHm_Chr2g0107601 RchiOBHm_Chr4g0423111
rosa_laevigata	RLG00000015367 RLG00000017594 RLG00000019619 RLG00000033266
rosa_multiflora	Rmu_co8147378.1_g000001 Rmu_sc0000800.1_g000031 Rmu_sc0028958.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122390 Rroxscaffold_2G00136160 Rroxscaffold_6G00412260
rosa_rugosa	Rorug01G0255400 Rorug02G0145700 Rorug02G0145800 Rorug02G0145900
rosa_samantha	Rh2AG195200 Rh2BG207800 Rh2CG200400 Rh2CG269000 Rh2DG202800 Rh4AG035300 Rh4AG243500 Rh4BG128100 Rh4BG248200 Rh4CG032800 Rh5CG247100 Rh6AG034200 Rh7AG164100
rosa_wichuraiana	Rw2G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	602
AccI	GTMKAC	1 cut(s)	624
AccII	CGCG	1 cut(s)	609
AcyI	GRCGYC	1 cut(s)	179
AgsI	TTSAA	3 cut(s)	197, 438, 448
AhdI	GACNNNNNGTC	1 cut(s)	183
AjnI	CCWGG	1 cut(s)	648
AluBI	AGCT	3 cut(s)	367, 460, 580
AluI	AGCT	3 cut(s)	367, 460, 580
Alw26I	GTCTC	3 cut(s)	19, 156, 512
AoxI	GGCC	4 cut(s)	127, 385, 656, 678
ApeKI	GCWGC	2 cut(s)	358, 717
AspLEI	GCGC	2 cut(s)	603, 611
AspS9I	GGNCC	4 cut(s)	128, 385, 452, 679
AsuHPI	GGTGA	1 cut(s)	638
AvaII	GGWCC	1 cut(s)	452
BbvI	GCAGC	2 cut(s)	370, 729
BccI	CCATC	3 cut(s)	411, 620, 690
BciT130I	CCWGG	1 cut(s)	650
BciVI	GTATCC	1 cut(s)	240
BclI	TGATCA	2 cut(s)	349, 643
BcoDI	GTCTC	3 cut(s)	19, 156, 512
BfaI	CTAG	1 cut(s)	581
BfuI	GTATCC	1 cut(s)	240
BisI	GCNGC	2 cut(s)	359, 718
BlsI	GCNGC	2 cut(s)	360, 719
Bme1390I	CCNGG	1 cut(s)	650
Bme18I	GGWCC	1 cut(s)	452
BmeRI	GACNNNNNGTC	1 cut(s)	183
BmgT120I	GGNCC	4 cut(s)	128, 385, 452, 679
BmiI	GGNNCC	2 cut(s)	386, 546
BmrFI	CCNGG	1 cut(s)	650
BmsI	GCATC	1 cut(s)	325
Bpu10I	CCTNAGC	1 cut(s)	456
BpuEI	CTTGAG	1 cut(s)	263
Bsa29I	ATCGAT	1 cut(s)	615
BsaHI	GRCGYC	1 cut(s)	179
BsaI	GGTCTC	1 cut(s)	156
BsaXI	ACNNNNNCTCC	2 cut(s)	496, 526
Bse3DI	GCAATG	1 cut(s)	681
BseBI	CCWGG	1 cut(s)	650
BseCI	ATCGAT	1 cut(s)	615
BseGI	GGATG	2 cut(s)	403, 682
BseMI	GCAATG	1 cut(s)	681
BseMII	CTCAG	2 cut(s)	399, 447
BseXI	GCAGC	2 cut(s)	370, 729
Bsh1236I	CGCG	1 cut(s)	609
BshFI	GGCC	4 cut(s)	129, 387, 658, 680
BshVI	ATCGAT	1 cut(s)	615
BsmAI	GTCTC	3 cut(s)	19, 156, 512
BsnI	GGCC	4 cut(s)	129, 387, 658, 680
Bso31I	GGTCTC	1 cut(s)	156
Bsp143I	GATC	3 cut(s)	349, 574, 643
BspANI	GGCC	4 cut(s)	129, 387, 658, 680
BspCNI	CTCAG	2 cut(s)	400, 448
BspDI	ATCGAT	1 cut(s)	615
BspFNI	CGCG	1 cut(s)	609
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	2 cut(s)	386, 546
BspTNI	GGTCTC	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	681
BssMI	GATC	3 cut(s)	349, 574, 643
BssNI	GRCGYC	1 cut(s)	179
Bst2UI	CCWGG	1 cut(s)	650
Bst6I	CTCTTC	1 cut(s)	12
BstACI	GRCGYC	1 cut(s)	179
BstDEI	CTNAG	2 cut(s)	408, 456
BstF5I	GGATG	2 cut(s)	403, 682
BstFNI	CGCG	1 cut(s)	609
BstHHI	GCGC	2 cut(s)	603, 611
BstKTI	GATC	3 cut(s)	352, 577, 646
BstMAI	GTCTC	3 cut(s)	19, 156, 512
BstMBI	GATC	3 cut(s)	349, 574, 643
BstMWI	GCNNNNNNNGC	3 cut(s)	364, 671, 726
BstNI	CCWGG	1 cut(s)	650
BstSCI	CCNGG	1 cut(s)	648
BstUI	CGCG	1 cut(s)	609
BstV1I	GCAGC	2 cut(s)	370, 729
Bsu15I	ATCGAT	1 cut(s)	615
BsuI	GTATCC	1 cut(s)	240
BsuRI	GGCC	4 cut(s)	129, 387, 658, 680
BsuTUI	ATCGAT	1 cut(s)	615
BtsCI	GGATG	2 cut(s)	403, 682
CciI	TCATGA	1 cut(s)	352
CfoI	GCGC	2 cut(s)	603, 611
Cfr13I	GGNCC	4 cut(s)	128, 385, 452, 679
ClaI	ATCGAT	1 cut(s)	615
CseI	GACGC	1 cut(s)	187
CviAII	CATG	2 cut(s)	353, 563
CviJI	RGCY	9 cut(s)	129, 284, 367, 387, 460, 547, 580, 658, 680
CviKI_1	RGCY	9 cut(s)	129, 284, 367, 387, 460, 547, 580, 658, 680
DdeI	CTNAG	2 cut(s)	408, 456
DpnI	GATC	3 cut(s)	351, 576, 645
DpnII	GATC	3 cut(s)	349, 574, 643
DraI	TTTAAA	1 cut(s)	220
DriI	GACNNNNNGTC	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	12
Eam1105I	GACNNNNNGTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	12
Eco31I	GGTCTC	1 cut(s)	156
Eco32I	GATATC	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	452
EcoO109I	RGGNCCY	2 cut(s)	385, 452
EcoRII	CCWGG	1 cut(s)	648
EcoRV	GATATC	1 cut(s)	154
EcoT22I	ATGCAT	1 cut(s)	318
FaeI	CATG	2 cut(s)	356, 566
FatI	CATG	2 cut(s)	352, 562
FbaI	TGATCA	2 cut(s)	349, 643
FblI	GTMKAC	1 cut(s)	624
Fnu4HI	GCNGC	2 cut(s)	359, 718
FokI	GGATG	2 cut(s)	390, 669
Fsp4HI	GCNGC	2 cut(s)	359, 718
FspAI	RTGCGCAY	1 cut(s)	602
FspBI	CTAG	1 cut(s)	581
FspI	TGCGCA	1 cut(s)	602
GlaI	GCGC	2 cut(s)	602, 610
GluI	GCNGC	2 cut(s)	359, 718
HaeIII	GGCC	4 cut(s)	129, 387, 658, 680
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	2 cut(s)	603, 611
Hin1I	GRCGYC	1 cut(s)	179
Hin1II	CATG	2 cut(s)	356, 566
Hin6I	GCGC	2 cut(s)	601, 609
HinP1I	GCGC	2 cut(s)	601, 609
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	2 cut(s)	61, 505
HphI	GGTGA	1 cut(s)	638
Hpy166II	GTNNAC	1 cut(s)	625
Hpy188I	TCNGA	2 cut(s)	161, 244
Hpy188III	TCNNGA	6 cut(s)	11, 58, 320, 353, 407, 455
Hpy8I	GTNNAC	1 cut(s)	625
HpyCH4V	TGCA	5 cut(s)	112, 316, 392, 665, 710
HpyF10VI	GCNNNNNNNGC	3 cut(s)	364, 671, 726
HpyF3I	CTNAG	2 cut(s)	408, 456
Hsp92I	GRCGYC	1 cut(s)	179
Hsp92II	CATG	2 cut(s)	356, 566
HspAI	GCGC	2 cut(s)	601, 609
Ksp22I	TGATCA	2 cut(s)	349, 643
Kzo9I	GATC	3 cut(s)	349, 574, 643
LmnI	GCTCC	1 cut(s)	544
LpnPI	CCDG	7 cut(s)	84, 179, 420, 468, 510, 635, 662
Lsp1109I	GCAGC	2 cut(s)	370, 729
LweI	GCATC	1 cut(s)	325
MaeI	CTAG	1 cut(s)	581
MalI	GATC	3 cut(s)	351, 576, 645
MboI	GATC	3 cut(s)	349, 574, 643
MboII	GAAGA	3 cut(s)	94, 97, 544
MluCI	AATT	1 cut(s)	699
MlyI	GAGTC	1 cut(s)	514
MmeI	TCCRAC	1 cut(s)	257
MnlI	CCTC	3 cut(s)	15, 87, 119
Mph1103I	ATGCAT	1 cut(s)	318
MseI	TTAA	4 cut(s)	75, 90, 102, 219
MslI	CAYNNNNRTG	1 cut(s)	321
MspR9I	CCNGG	1 cut(s)	650
MvaI	CCWGG	1 cut(s)	650
MvnI	CGCG	1 cut(s)	609
MwoI	GCNNNNNNNGC	3 cut(s)	364, 671, 726
NdeII	GATC	3 cut(s)	349, 574, 643
NlaIII	CATG	2 cut(s)	356, 566
NlaIV	GGNNCC	2 cut(s)	386, 546
NsbI	TGCGCA	1 cut(s)	602
NsiI	ATGCAT	1 cut(s)	318
PagI	TCATGA	1 cut(s)	352
PfeI	GAWTC	1 cut(s)	61
PkrI	GCNGC	2 cut(s)	360, 719
PleI	GAGTC	1 cut(s)	513
PpsI	GAGTC	1 cut(s)	513
PpuMI	RGGWCCY	1 cut(s)	452
Psp5II	RGGWCCY	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	648
PspGI	CCWGG	1 cut(s)	648
PspN4I	GGNNCC	2 cut(s)	386, 546
PspPI	GGNCC	4 cut(s)	128, 385, 452, 679
PspPPI	RGGWCCY	1 cut(s)	452
RseI	CAYNNNNRTG	1 cut(s)	321
SaqAI	TTAA	4 cut(s)	75, 90, 102, 219
SatI	GCNGC	2 cut(s)	359, 718
Sau3AI	GATC	3 cut(s)	349, 574, 643
Sau96I	GGNCC	4 cut(s)	128, 385, 452, 679
SchI	GAGTC	1 cut(s)	514
ScrFI	CCNGG	1 cut(s)	650
SetI	ASST	8 cut(s)	73, 310, 369, 443, 454, 462, 582, 600
SfaNI	GCATC	1 cut(s)	325
SinI	GGWCC	1 cut(s)	452
SmiMI	CAYNNNNRTG	1 cut(s)	321
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	1 cut(s)	699
SspI	AATATT	2 cut(s)	108, 136
SspMI	CTAG	1 cut(s)	581
StyD4I	CCNGG	1 cut(s)	648
TaqI	TCGA	3 cut(s)	319, 468, 615
TasI	AATT	1 cut(s)	699
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	4 cut(s)	75, 90, 102, 219
Tru9I	TTAA	4 cut(s)	75, 90, 102, 219
TseI	GCWGC	2 cut(s)	358, 717
TspDTI	ATGAA	1 cut(s)	285
VpaK11BI	GGWCC	1 cut(s)	452
XmiI	GTMKAC	1 cut(s)	624
XspI	CTAG	1 cut(s)	581
Zsp2I	ATGCAT	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.